Wall clock time and date at job start Tue Mar 31 2020 13:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 111.00009 * 2 1 4 4 C 1.46903 * 110.99885 * 123.95190 * 2 1 3 5 5 C 1.53000 * 109.47229 * 66.04759 * 4 2 1 6 6 C 1.53000 * 109.47252 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46915 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99928 * 269.99681 * 7 6 5 9 9 C 1.50699 * 109.47097 * 270.00543 * 8 7 6 10 10 H 1.07991 * 120.00124 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99441 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00532 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99496 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47261 * 90.00155 * 13 11 9 15 15 H 1.48506 * 109.47156 * 209.99846 * 13 11 9 16 16 H 1.48501 * 109.47429 * 329.99578 * 13 11 9 17 17 C 1.34777 * 120.00199 * 90.00326 * 7 6 5 18 18 O 1.21753 * 120.00052 * 359.97438 * 17 7 6 19 19 C 1.41713 * 119.99917 * 179.97438 * 17 7 6 20 20 C 1.35229 * 120.00000 * 179.97438 * 19 17 7 21 21 C 1.46713 * 120.00126 * 180.27720 * 20 19 17 22 22 C 1.36521 * 123.30186 * 179.72269 * 21 20 19 23 23 S 1.70935 * 108.71288 * 179.97438 * 22 21 20 24 24 C 1.70733 * 91.21726 * 359.97438 * 23 22 21 25 25 N 1.28605 * 110.80727 * 359.73039 * 24 23 22 26 26 H 1.08993 * 109.47381 * 296.04807 * 1 2 3 27 27 H 1.09000 * 109.46635 * 56.04904 * 1 2 3 28 28 H 1.08999 * 109.47134 * 176.04392 * 1 2 3 29 29 H 1.08995 * 109.47199 * 183.94974 * 3 2 1 30 30 H 1.08992 * 109.46762 * 303.95185 * 3 2 1 31 31 H 1.09000 * 109.46856 * 63.95306 * 3 2 1 32 32 H 1.09001 * 109.46851 * 306.04820 * 4 2 1 33 33 H 1.08996 * 109.47262 * 186.04813 * 4 2 1 34 34 H 1.09006 * 109.47061 * 59.99764 * 5 4 2 35 35 H 1.08996 * 109.47043 * 300.00188 * 5 4 2 36 36 H 1.09001 * 109.46783 * 60.00088 * 6 5 4 37 37 H 1.09005 * 109.47055 * 300.00075 * 6 5 4 38 38 H 1.09010 * 109.46903 * 30.00450 * 8 7 6 39 39 H 1.09001 * 109.46919 * 150.00120 * 8 7 6 40 40 H 0.96999 * 120.00046 * 179.97438 * 12 11 9 41 41 H 1.08001 * 119.99836 * 359.97438 * 19 17 7 42 42 H 1.08002 * 119.99629 * 359.97438 * 20 19 17 43 43 H 1.07996 * 125.64241 * 0.02562 * 22 21 20 44 44 H 1.08001 * 124.59395 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.1803 -3.0405 2.1550 7 7 1.8323 -4.4544 1.9945 8 6 0.5759 -4.9668 2.5469 9 6 0.8050 -5.4435 3.9581 10 1 1.7881 -5.3723 4.3992 11 6 -0.2405 -5.9714 4.6856 12 7 -1.4377 -6.0586 4.1483 13 14 0.0436 -6.5629 6.4346 14 1 -0.1906 -5.4423 7.3804 15 1 -0.8944 -7.6728 6.7403 16 1 1.4417 -7.0440 6.5735 17 6 2.6680 -5.2839 1.3388 18 8 3.7120 -4.8581 0.8794 19 6 2.3316 -6.6518 1.1841 20 6 3.1698 -7.4840 0.5257 21 6 2.8187 -8.8989 0.3602 22 6 3.6112 -9.7960 -0.2962 23 16 2.8489 -11.3257 -0.2664 24 6 1.5291 -10.6914 0.6115 25 7 1.6951 -9.4374 0.8435 26 1 -0.3634 0.4512 0.9232 27 1 -0.3632 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0828 1.3433 -0.0708 30 1 1.5899 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5610 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1757 34 1 2.0658 -2.6214 0.0452 35 1 0.5472 -2.3475 0.9324 36 1 1.7463 -2.6618 3.0804 37 1 3.2646 -2.9355 2.1926 38 1 -0.1710 -4.1728 2.5484 39 1 0.2222 -5.7972 1.9358 40 1 -2.1731 -6.4304 4.6601 41 1 1.4057 -7.0297 1.5920 42 1 4.0955 -7.1060 0.1175 43 1 4.5626 -9.5759 -0.7573 44 1 0.6729 -11.2663 0.9323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491534066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:23 Heat of formation + Delta-G solvation = 12.059496 kcal Electronic energy + Delta-G solvation = -24566.399621 eV Core-core repulsion = 21031.447838 eV Total energy + Delta-G solvation = -3534.951784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14134 -40.50647 -38.67832 -36.91194 -34.93981 -34.35660 -32.95197 -30.97551 -29.26494 -28.49578 -27.69967 -26.24668 -25.06275 -24.59008 -23.05061 -21.78900 -20.61791 -19.92230 -18.70470 -18.61751 -18.16002 -17.16911 -16.70947 -16.52476 -16.26474 -16.20835 -15.82751 -15.56649 -15.35009 -15.12857 -14.66350 -14.48501 -14.31284 -14.19681 -13.65564 -13.42419 -13.24619 -13.16249 -12.92475 -12.75329 -12.64050 -12.57656 -12.51250 -12.42987 -12.30469 -12.03763 -11.72193 -11.50401 -11.33933 -10.90209 -10.63785 -10.57258 -10.55878 -9.56007 -9.32836 -9.14155 -8.20846 -6.35604 -0.58133 0.35821 0.50128 0.78155 1.38315 1.39696 1.50052 1.91349 2.28802 2.44734 2.60473 3.04876 3.09229 3.28348 3.80564 3.93801 4.11253 4.17298 4.22277 4.31659 4.33736 4.40466 4.42467 4.47573 4.53731 4.59870 4.66293 4.74221 4.79106 4.87348 4.99774 5.00679 5.06008 5.09352 5.14826 5.23999 5.28800 5.44950 5.64915 5.85961 6.02990 6.04835 6.11503 6.52332 6.76260 6.79100 7.27510 7.38798 8.84981 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.003667 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.957959 B = 7633.345307 C =10118.561903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.067 3.933 5 C -0.112 4.112 6 C 0.121 3.879 7 N -0.593 5.593 8 C 0.256 3.744 9 C -0.546 4.546 10 H 0.049 0.951 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.957 3.043 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.275 1.275 17 C 0.545 3.455 18 O -0.597 6.597 19 C -0.195 4.195 20 C 0.001 3.999 21 C 0.038 3.962 22 C -0.267 4.267 23 S 0.277 5.723 24 C -0.017 4.017 25 N -0.493 5.493 26 H 0.028 0.972 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.268 0.732 41 H 0.124 0.876 42 H 0.153 0.847 43 H 0.209 0.791 44 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 -2.782 -9.707 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.290 5.290 3 C -0.122 4.122 4 C -0.062 4.062 5 C -0.151 4.151 6 C -0.003 4.003 7 N -0.321 5.321 8 C 0.135 3.865 9 C -0.584 4.584 10 H 0.067 0.933 11 C -0.177 4.177 12 N -0.557 5.557 13 Si 0.782 3.218 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.200 1.200 17 C 0.338 3.662 18 O -0.483 6.483 19 C -0.218 4.218 20 C -0.022 4.022 21 C -0.094 4.094 22 C -0.408 4.408 23 S 0.532 5.468 24 C -0.315 4.315 25 N -0.207 5.207 26 H 0.047 0.953 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.142 0.858 42 H 0.170 0.830 43 H 0.226 0.774 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.885 -3.544 -10.371 12.943 hybrid contribution -0.559 1.107 2.048 2.394 sum 6.326 -2.437 -8.323 10.735 Atomic orbital electron populations 1.22442 0.86987 1.02155 1.01071 1.61959 1.08693 1.15019 1.43288 1.22426 1.01088 0.87589 1.01146 1.21953 1.00530 0.92087 0.91599 1.21745 1.00538 0.94867 0.97998 1.21327 1.00542 0.79983 0.98403 1.48126 1.21773 1.09279 1.52907 1.19067 0.80390 0.94136 0.92892 1.21623 0.95577 1.41959 0.99250 0.93257 1.25640 0.94604 0.95351 1.02149 1.70015 1.01215 1.45699 1.38805 0.85573 0.77918 0.78308 0.79982 1.19523 1.20337 1.20013 1.17259 0.83214 0.87464 0.78252 1.90668 1.25894 1.79164 1.52536 1.22209 1.02824 0.93612 1.03168 1.21887 0.98009 0.88854 0.93431 1.19662 0.91778 0.95764 1.02196 1.27328 1.07595 0.98489 1.07351 1.82303 1.10464 1.07098 1.46892 1.28935 1.05881 0.93643 1.03078 1.66975 1.20554 1.12114 1.21043 0.95319 0.89964 0.92360 0.90899 0.90183 0.95208 0.94152 0.90055 0.92861 0.92627 0.90565 0.90905 0.95959 0.95872 0.92304 0.85821 0.82955 0.77414 0.76190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.32 127.69 1.19 1.71 16 2 N -0.57 -14.76 5.02 -948.86 -4.76 -19.52 16 3 C 0.03 0.50 9.57 127.69 1.22 1.72 16 4 C 0.07 1.88 4.96 86.30 0.43 2.31 16 5 C -0.11 -3.90 5.46 30.59 0.17 -3.73 16 6 C 0.12 4.76 5.41 86.38 0.47 5.23 16 7 N -0.59 -27.45 2.46 -836.63 -2.05 -29.50 16 8 C 0.26 13.29 4.85 85.63 0.42 13.71 16 9 C -0.55 -30.33 9.39 25.60 0.24 -30.09 16 10 H 0.05 2.80 7.81 -2.92 -0.02 2.77 16 11 C 0.02 1.27 5.46 84.66 0.46 1.73 16 12 N -0.92 -52.82 13.29 21.45 0.28 -52.53 16 13 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 C 0.54 25.39 7.45 85.10 0.63 26.02 16 18 O -0.60 -28.44 15.68 -4.52 -0.07 -28.51 16 19 C -0.20 -8.64 8.65 22.43 0.19 -8.45 16 20 C 0.00 0.02 9.52 23.79 0.23 0.25 16 21 C 0.04 1.20 6.66 40.68 0.27 1.48 16 22 C -0.27 -5.81 10.99 67.42 0.74 -5.07 16 23 S 0.28 4.43 22.96 -56.49 -1.30 3.14 16 24 C -0.02 -0.41 12.16 130.71 1.59 1.18 16 25 N -0.49 -16.99 9.96 -192.58 -1.92 -18.90 16 26 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 28 H 0.06 1.58 6.47 -2.39 -0.02 1.57 16 29 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 30 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 33 H 0.08 2.17 8.06 -2.39 -0.02 2.15 16 34 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.06 2.01 6.55 -2.39 -0.02 1.99 16 36 H 0.08 2.96 8.07 -2.39 -0.02 2.94 16 37 H 0.07 2.85 7.42 -2.38 -0.02 2.83 16 38 H 0.02 1.20 8.07 -2.38 -0.02 1.18 16 39 H 0.02 1.29 6.08 -2.39 -0.01 1.28 16 40 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.12 6.16 5.62 -2.91 -0.02 6.14 16 42 H 0.15 5.03 7.45 -2.91 -0.02 5.00 16 43 H 0.21 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.22 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -71.05 383.00 1.44 -69.61 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.99 Total: 22.40 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 8.25 Total: 7.99 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -8.45 Total: -120.46 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.07 Total: -28.51 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.30 Total: 3.14 kcal Total: -71.05 1.44 -69.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491534066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.668 kcal (2) G-P(sol) polarization free energy of solvation -71.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds