Wall clock time and date at job start Tue Mar 31 2020 13:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99592 * 2 1 4 4 C 1.46899 * 111.00047 * 123.95261 * 2 1 3 5 5 C 1.53001 * 109.46785 * 170.00070 * 4 2 1 6 6 C 1.53006 * 109.46815 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46801 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00399 * 270.00469 * 7 6 5 9 9 C 1.50704 * 109.46919 * 270.00019 * 8 7 6 10 10 H 1.08000 * 120.00085 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00067 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00271 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00210 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46847 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47307 * 119.99866 * 13 11 9 16 16 H 1.48501 * 109.47198 * 240.00368 * 13 11 9 17 17 C 1.34779 * 119.99869 * 90.00287 * 7 6 5 18 18 O 1.21761 * 119.99745 * 359.97438 * 17 7 6 19 19 C 1.41707 * 120.00419 * 180.27250 * 17 7 6 20 20 C 1.35226 * 120.00423 * 195.22814 * 19 17 7 21 21 C 1.46710 * 119.99790 * 30.23163 * 20 19 17 22 22 C 1.36522 * 123.29887 * 186.97605 * 21 20 19 23 23 S 1.70940 * 108.71301 * 179.89978 * 22 21 20 24 24 C 1.70725 * 91.21293 * 0.30485 * 23 22 21 25 25 N 1.28598 * 110.81425 * 359.81587 * 24 23 22 26 26 H 1.09000 * 109.47446 * 296.03977 * 1 2 3 27 27 H 1.08996 * 109.47472 * 56.04922 * 1 2 3 28 28 H 1.09005 * 109.46742 * 176.04427 * 1 2 3 29 29 H 1.08993 * 109.47335 * 183.95224 * 3 2 1 30 30 H 1.08995 * 109.47451 * 303.95546 * 3 2 1 31 31 H 1.09002 * 109.47058 * 63.95792 * 3 2 1 32 32 H 1.08999 * 109.46873 * 50.00089 * 4 2 1 33 33 H 1.09004 * 109.47115 * 289.99987 * 4 2 1 34 34 H 1.09007 * 109.46820 * 60.00606 * 5 4 2 35 35 H 1.08991 * 109.47489 * 300.00427 * 5 4 2 36 36 H 1.09000 * 109.46525 * 60.00502 * 6 5 4 37 37 H 1.08994 * 109.47064 * 299.99863 * 6 5 4 38 38 H 1.08998 * 109.47393 * 29.99515 * 8 7 6 39 39 H 1.09001 * 109.47354 * 150.00341 * 8 7 6 40 40 H 0.96994 * 120.00309 * 180.02562 * 12 11 9 41 41 H 1.08005 * 119.99748 * 15.22677 * 19 17 7 42 42 H 1.07998 * 119.99960 * 210.22624 * 20 19 17 43 43 H 1.08002 * 125.64487 * 359.97438 * 22 21 20 44 44 H 1.08004 * 124.58948 * 179.79658 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9552 0.9703 6 6 4.0529 -1.7525 2.1555 7 7 5.4977 -1.9343 1.9949 8 6 6.0140 -3.1059 1.2830 9 6 6.2359 -4.2306 2.2612 10 1 6.0148 -4.0869 3.3085 11 6 6.7210 -5.4431 1.8192 12 7 6.9907 -5.6180 0.5439 13 14 6.9954 -6.8375 3.0316 14 1 6.6173 -6.3888 4.3958 15 1 6.1590 -8.0019 2.6445 16 1 8.4274 -7.2304 3.0184 17 6 6.3519 -1.0235 2.5023 18 8 5.9228 -0.0495 3.0936 19 6 7.7493 -1.1963 2.3420 20 6 8.6105 -0.4748 3.0946 21 6 8.2259 -0.0493 4.4449 22 6 8.9810 0.7934 5.2088 23 16 8.1868 1.0395 6.7024 24 6 6.9091 0.0085 6.2343 25 7 7.1047 -0.4529 5.0500 26 1 -0.3634 0.4511 0.9233 27 1 -0.3634 0.5739 -0.8524 28 1 -0.3633 -1.0253 -0.0709 29 1 3.0826 1.3434 -0.0708 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 1.5090 -1.7406 1.1756 33 1 1.7975 -0.2247 2.0628 34 1 3.9909 0.0195 0.9323 35 1 3.7024 -1.4964 0.0451 36 1 3.5665 -2.7272 2.1938 37 1 3.8550 -1.2109 3.0804 38 1 5.2934 -3.4186 0.5273 39 1 6.9583 -2.8516 0.8016 40 1 7.3317 -6.4711 0.2329 41 1 8.1264 -1.9042 1.6188 42 1 9.5815 -0.2119 2.7016 43 1 9.9235 1.2328 4.9172 44 1 6.0527 -0.2248 6.8496 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491534167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:26 Heat of formation + Delta-G solvation = 35.722161 kcal Electronic energy + Delta-G solvation = -25231.695037 eV Core-core repulsion = 21697.769344 eV Total energy + Delta-G solvation = -3533.925693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16137 -40.08364 -38.64083 -36.70665 -34.88437 -34.23416 -32.87692 -30.81399 -29.18358 -28.52015 -27.54420 -26.03978 -25.02264 -24.57183 -22.98402 -21.79118 -20.87117 -19.70109 -18.67923 -18.27349 -18.07750 -17.03644 -16.77089 -16.52705 -16.21792 -16.08093 -15.72263 -15.38583 -15.22722 -14.98830 -14.55758 -14.31152 -14.18821 -14.08817 -13.62126 -13.42484 -13.29465 -13.26639 -12.91004 -12.87503 -12.67448 -12.58093 -12.43418 -12.37339 -12.32746 -11.94474 -11.65821 -11.51164 -10.91090 -10.71382 -10.48292 -10.45195 -10.32724 -9.35072 -9.30050 -8.91207 -8.17691 -6.32091 -0.49893 0.41581 0.61063 0.89082 1.37928 1.40444 1.52049 2.18356 2.37096 2.56825 2.73971 3.06730 3.10607 3.44417 3.88867 4.09551 4.09917 4.17198 4.22530 4.30893 4.42186 4.42860 4.44358 4.51213 4.60969 4.63691 4.66290 4.74881 4.79322 4.96513 4.98661 4.99232 5.08173 5.14104 5.19864 5.28941 5.37300 5.41857 5.69872 5.97458 6.03678 6.10233 6.11735 6.66524 6.91350 6.96430 7.37356 7.63376 8.87092 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.006621 B = 0.005211 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4227.651056 B = 5371.494252 C = 8689.159958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.564 5.564 3 C 0.024 3.976 4 C 0.068 3.932 5 C -0.110 4.110 6 C 0.129 3.871 7 N -0.601 5.601 8 C 0.256 3.744 9 C -0.537 4.537 10 H 0.043 0.957 11 C 0.022 3.978 12 N -0.920 5.920 13 Si 0.955 3.045 14 H -0.277 1.277 15 H -0.275 1.275 16 H -0.275 1.275 17 C 0.551 3.449 18 O -0.571 6.571 19 C -0.208 4.208 20 C -0.009 4.009 21 C 0.046 3.954 22 C -0.271 4.271 23 S 0.237 5.763 24 C -0.028 4.028 25 N -0.456 5.456 26 H 0.029 0.971 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.017 0.983 39 H 0.029 0.971 40 H 0.268 0.732 41 H 0.139 0.861 42 H 0.181 0.819 43 H 0.210 0.790 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 14.277 6.962 15.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.124 4.124 4 C -0.061 4.061 5 C -0.149 4.149 6 C 0.005 3.995 7 N -0.331 5.331 8 C 0.135 3.865 9 C -0.576 4.576 10 H 0.062 0.938 11 C -0.178 4.178 12 N -0.560 5.560 13 Si 0.780 3.220 14 H -0.202 1.202 15 H -0.200 1.200 16 H -0.201 1.201 17 C 0.344 3.656 18 O -0.454 6.454 19 C -0.230 4.230 20 C -0.031 4.031 21 C -0.085 4.085 22 C -0.412 4.412 23 S 0.492 5.508 24 C -0.327 4.327 25 N -0.168 5.168 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.156 0.844 42 H 0.198 0.802 43 H 0.227 0.773 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.750 14.599 7.385 16.454 hybrid contribution -0.008 -1.165 0.026 1.165 sum -1.758 13.434 7.411 15.443 Atomic orbital electron populations 1.22432 0.85807 1.02910 1.01118 1.61961 1.09253 1.14401 1.43196 1.22411 1.00541 0.88488 1.00929 1.21945 0.94177 0.98621 0.91331 1.21731 0.95398 0.99563 0.98202 1.21139 0.80831 0.99671 0.97901 1.48114 1.06175 1.23253 1.55568 1.19023 0.94247 0.81881 0.91324 1.21657 1.43812 0.97756 0.94350 0.93846 1.25606 0.94904 1.00542 0.96734 1.70013 1.45208 1.25805 1.14959 0.85561 0.78109 0.79248 0.79057 1.20215 1.20045 1.20053 1.17227 0.87953 0.82564 0.77898 1.90655 1.80027 1.31674 1.43067 1.22370 0.93798 1.01082 1.05773 1.22165 1.00162 0.91849 0.88904 1.19891 0.91195 1.00088 0.97364 1.27282 1.08273 1.05357 1.00273 1.82167 1.12329 1.42791 1.13481 1.28737 1.05930 1.01939 0.96074 1.67049 1.17644 1.24518 1.07630 0.95288 0.90070 0.90907 0.92574 0.89822 0.95594 0.90028 0.94764 0.93243 0.92432 0.91278 0.92073 0.96474 0.95311 0.92314 0.84353 0.80226 0.77270 0.77778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.57 127.69 1.22 1.73 16 2 N -0.56 -15.08 5.02 -948.85 -4.76 -19.84 16 3 C 0.02 0.60 9.32 127.69 1.19 1.79 16 4 C 0.07 1.98 4.96 86.30 0.43 2.41 16 5 C -0.11 -3.91 5.46 30.60 0.17 -3.75 16 6 C 0.13 5.26 5.41 86.38 0.47 5.73 16 7 N -0.60 -27.90 2.46 -836.66 -2.05 -29.96 16 8 C 0.26 13.15 4.95 85.64 0.42 13.57 16 9 C -0.54 -29.81 9.39 25.60 0.24 -29.57 16 10 H 0.04 2.53 7.81 -2.91 -0.02 2.50 16 11 C 0.02 1.21 5.46 84.65 0.46 1.67 16 12 N -0.92 -52.25 13.29 21.45 0.28 -51.96 16 13 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 C 0.55 25.29 6.59 85.10 0.56 25.86 16 18 O -0.57 -27.33 13.16 -4.54 -0.06 -27.39 16 19 C -0.21 -8.54 9.00 22.43 0.20 -8.34 16 20 C -0.01 -0.30 9.85 23.79 0.23 -0.06 16 21 C 0.05 1.57 5.93 40.68 0.24 1.81 16 22 C -0.27 -6.47 10.99 67.42 0.74 -5.73 16 23 S 0.24 4.77 22.96 -56.49 -1.30 3.48 16 24 C -0.03 -0.80 12.15 130.72 1.59 0.79 16 25 N -0.46 -17.54 7.28 -192.59 -1.40 -18.94 16 26 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 28 H 0.07 1.41 8.12 -2.38 -0.02 1.39 16 29 H 0.06 1.55 6.47 -2.39 -0.02 1.54 16 30 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 2.27 8.06 -2.39 -0.02 2.25 16 33 H 0.03 0.99 8.12 -2.38 -0.02 0.97 16 34 H 0.05 1.87 6.55 -2.38 -0.02 1.86 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 2.82 8.07 -2.39 -0.02 2.81 16 37 H 0.06 2.57 7.42 -2.39 -0.02 2.55 16 38 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 39 H 0.03 1.52 5.95 -2.39 -0.01 1.51 16 40 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.14 5.81 6.06 -2.91 -0.02 5.79 16 42 H 0.18 4.16 8.06 -2.91 -0.02 4.14 16 43 H 0.21 3.31 8.06 -2.91 -0.02 3.28 16 44 H 0.21 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -71.69 377.92 1.89 -69.80 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.98 Total: 21.10 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 8.17 Total: 7.91 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -7.93 Total: -120.70 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.30 Total: 3.48 kcal Total: -71.69 1.89 -69.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491534167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.524 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds