Wall clock time and date at job start Tue Mar 31 2020 13:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99807 * 2 1 4 4 C 1.46904 * 110.99675 * 123.94974 * 2 1 3 5 5 C 1.52994 * 109.46908 * 66.04968 * 4 2 1 6 6 C 1.53002 * 109.47229 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47602 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99801 * 90.00070 * 7 6 5 9 9 C 1.50704 * 109.47074 * 90.00170 * 8 7 6 10 10 H 1.07994 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99748 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00255 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99492 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47506 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47092 * 120.00107 * 13 11 9 16 16 H 1.48506 * 109.46575 * 239.99689 * 13 11 9 17 17 C 1.34775 * 120.00182 * 270.00355 * 7 6 5 18 18 O 1.21774 * 120.00087 * 0.02562 * 17 7 6 19 19 C 1.41548 * 120.00072 * 179.97438 * 17 7 6 20 20 C 1.35557 * 119.99901 * 186.75485 * 19 17 7 21 21 C 1.41730 * 120.00231 * 10.06437 * 20 19 17 22 22 C 1.37066 * 126.19205 * 224.72594 * 21 20 19 23 23 N 1.30957 * 113.84897 * 179.97438 * 22 21 20 24 24 C 1.29354 * 117.49154 * 0.02562 * 23 22 21 25 25 S 1.70919 * 110.65152 * 359.74302 * 24 23 22 26 26 H 1.08996 * 109.47114 * 296.05050 * 1 2 3 27 27 H 1.09003 * 109.46805 * 56.05304 * 1 2 3 28 28 H 1.09006 * 109.46850 * 176.04738 * 1 2 3 29 29 H 1.09006 * 109.46979 * 183.95150 * 3 2 1 30 30 H 1.08999 * 109.46978 * 303.95026 * 3 2 1 31 31 H 1.08996 * 109.47453 * 63.95327 * 3 2 1 32 32 H 1.08994 * 109.47067 * 306.04655 * 4 2 1 33 33 H 1.09003 * 109.46734 * 186.04831 * 4 2 1 34 34 H 1.09008 * 109.47664 * 59.99888 * 5 4 2 35 35 H 1.09003 * 109.47312 * 299.99509 * 5 4 2 36 36 H 1.09010 * 109.46692 * 60.00152 * 6 5 4 37 37 H 1.09000 * 109.47669 * 300.00278 * 6 5 4 38 38 H 1.09003 * 109.47140 * 209.99913 * 8 7 6 39 39 H 1.08999 * 109.47298 * 330.00376 * 8 7 6 40 40 H 0.97001 * 119.99892 * 180.02562 * 12 11 9 41 41 H 1.07997 * 119.99688 * 6.75419 * 19 17 7 42 42 H 1.08002 * 119.99772 * 190.06569 * 20 19 17 43 43 H 1.08001 * 123.07789 * 0.02562 * 22 21 20 44 44 H 1.07995 * 124.67649 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9705 6 6 2.1802 -3.0404 2.1550 7 7 1.8312 -4.4542 1.9953 8 6 2.7387 -5.3566 1.2824 9 6 3.7101 -5.9671 2.2596 10 1 3.6564 -5.7090 3.3069 11 6 4.6666 -6.8559 1.8167 12 7 4.7315 -7.1706 0.5415 13 14 5.8701 -7.6132 3.0282 14 1 5.5888 -7.0989 4.3925 15 1 5.7219 -9.0907 3.0152 16 1 7.2570 -7.2514 2.6395 17 6 0.6752 -4.9247 2.5040 18 8 -0.0794 -4.1744 3.0961 19 6 0.3378 -6.2906 2.3492 20 6 -0.8821 -6.7357 2.7381 21 6 -1.8926 -5.8095 3.0986 22 6 -2.7192 -5.8970 4.1885 23 7 -3.5678 -4.9048 4.2904 24 6 -3.5271 -3.9882 3.3786 25 16 -2.3090 -4.3337 2.2305 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3633 -1.0253 -0.0708 29 1 3.0828 1.3432 -0.0708 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8724 0.9232 32 1 1.5610 -0.3871 2.0628 33 1 3.0797 -0.6610 1.1757 34 1 2.0658 -2.6214 0.0452 35 1 0.5471 -2.3474 0.9324 36 1 1.7460 -2.6617 3.0805 37 1 3.2645 -2.9355 2.1928 38 1 2.1619 -6.1469 0.8018 39 1 3.2882 -4.7964 0.5260 40 1 5.4042 -7.7962 0.2299 41 1 1.0522 -6.9781 1.9212 42 1 -1.0841 -7.7961 2.7733 43 1 -2.6743 -6.7095 4.8986 44 1 -4.1714 -3.1220 3.3490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493590278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:20 Heat of formation + Delta-G solvation = 29.646481 kcal Electronic energy + Delta-G solvation = -25315.797770 eV Core-core repulsion = 21781.608615 eV Total energy + Delta-G solvation = -3534.189155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16480 -40.18318 -38.67523 -36.99358 -35.25187 -34.58964 -33.01235 -30.26176 -29.23007 -28.48242 -27.58292 -26.31708 -24.95808 -24.31886 -22.63098 -21.74928 -21.19121 -19.93130 -18.72137 -18.33987 -18.13686 -17.12526 -16.76842 -16.48588 -16.27141 -16.14905 -15.55717 -15.44563 -15.32211 -14.83448 -14.73071 -14.39402 -14.30520 -14.25859 -13.60150 -13.40320 -13.25449 -13.24369 -12.90637 -12.85715 -12.64838 -12.57853 -12.47425 -12.39819 -12.34905 -11.97734 -11.66921 -11.49081 -11.34524 -10.70394 -10.54104 -10.40634 -9.78972 -9.31306 -9.15976 -9.02253 -8.18945 -6.34178 -0.72905 0.53859 0.87558 1.07639 1.40277 1.44177 1.54206 1.98737 2.31633 2.49587 2.56220 3.07571 3.10798 3.59748 3.87760 4.05186 4.11168 4.15709 4.24577 4.41814 4.43114 4.44944 4.48466 4.52133 4.62948 4.67167 4.71571 4.76975 4.81623 4.94613 5.00943 5.01630 5.10209 5.17588 5.23008 5.28061 5.33936 5.42118 5.68108 5.89537 6.05559 6.07493 6.12656 6.59329 6.83785 6.87585 7.32681 7.43651 8.85810 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007316 B = 0.005470 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3826.338298 B = 5117.179336 C = 8435.882507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.564 5.564 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.111 4.111 6 C 0.123 3.877 7 N -0.590 5.590 8 C 0.253 3.747 9 C -0.544 4.544 10 H 0.049 0.951 11 C 0.024 3.976 12 N -0.918 5.918 13 Si 0.955 3.045 14 H -0.274 1.274 15 H -0.276 1.276 16 H -0.279 1.279 17 C 0.531 3.469 18 O -0.573 6.573 19 C -0.214 4.214 20 C 0.011 3.989 21 C -0.227 4.227 22 C 0.046 3.954 23 N -0.507 5.507 24 C -0.024 4.024 25 S 0.242 5.758 26 H 0.027 0.973 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.137 0.863 42 H 0.175 0.825 43 H 0.190 0.810 44 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.221 9.141 -0.384 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.288 5.288 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.150 4.150 6 C -0.001 4.001 7 N -0.319 5.319 8 C 0.132 3.868 9 C -0.582 4.582 10 H 0.067 0.933 11 C -0.176 4.176 12 N -0.558 5.558 13 Si 0.780 3.220 14 H -0.199 1.199 15 H -0.201 1.201 16 H -0.205 1.205 17 C 0.324 3.676 18 O -0.459 6.459 19 C -0.238 4.238 20 C -0.011 4.011 21 C -0.349 4.349 22 C -0.111 4.111 23 N -0.221 5.221 24 C -0.316 4.316 25 S 0.500 5.500 26 H 0.045 0.955 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.192 0.808 43 H 0.207 0.793 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.415 9.892 -1.171 15.150 hybrid contribution 0.990 -0.928 1.837 2.284 sum -10.425 8.965 0.666 13.766 Atomic orbital electron populations 1.22434 0.86887 1.02247 1.00916 1.61960 1.08792 1.14845 1.43199 1.22422 1.01050 0.87754 1.01060 1.21949 1.00396 0.92461 0.91400 1.21733 1.00754 0.94487 0.98015 1.21251 0.99998 0.80426 0.98391 1.48172 1.19782 1.09927 1.53988 1.19085 0.87871 0.88389 0.91428 1.21680 1.15833 1.26125 0.94591 0.93280 1.25597 0.98766 0.96607 0.96645 1.70010 1.35793 1.34950 1.15016 0.85559 0.78845 0.78399 0.79164 1.19862 1.20130 1.20463 1.17450 0.81349 0.89143 0.79650 1.90809 1.49429 1.60838 1.44834 1.22484 0.99106 0.96490 1.05729 1.20851 0.89408 0.99542 0.91320 1.23983 1.05252 1.02257 1.03419 1.22656 0.92157 0.98769 0.97484 1.65999 1.25187 1.03458 1.27488 1.28941 1.02791 1.03313 0.96540 1.83614 1.22738 1.16956 1.26702 0.95476 0.90084 0.92049 0.91074 0.90195 0.95324 0.94600 0.90299 0.92467 0.92390 0.91418 0.91054 0.95087 0.96216 0.92289 0.84505 0.80818 0.79302 0.76435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.32 127.69 1.19 1.68 16 2 N -0.56 -13.52 5.02 -948.84 -4.76 -18.28 16 3 C 0.02 0.46 9.57 127.69 1.22 1.68 16 4 C 0.07 1.73 4.96 86.30 0.43 2.16 16 5 C -0.11 -3.47 5.46 30.59 0.17 -3.30 16 6 C 0.12 4.44 5.41 86.38 0.47 4.91 16 7 N -0.59 -24.36 2.46 -836.82 -2.06 -26.41 16 8 C 0.25 11.93 4.80 85.64 0.41 12.34 16 9 C -0.54 -28.00 9.37 25.60 0.24 -27.76 16 10 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 11 C 0.02 1.26 5.46 84.66 0.46 1.72 16 12 N -0.92 -49.82 13.29 21.45 0.28 -49.54 16 13 Si 0.95 41.46 29.54 68.60 2.03 43.48 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 C 0.53 21.21 7.01 85.06 0.60 21.81 16 18 O -0.57 -23.08 11.13 -4.58 -0.05 -23.13 16 19 C -0.21 -7.75 9.02 22.47 0.20 -7.55 16 20 C 0.01 0.31 9.93 22.51 0.22 0.54 16 21 C -0.23 -6.87 4.67 22.86 0.11 -6.77 16 22 C 0.05 1.33 11.38 84.55 0.96 2.29 16 23 N -0.51 -15.19 10.50 -201.55 -2.12 -17.31 16 24 C -0.02 -0.63 12.20 130.61 1.59 0.97 16 25 S 0.24 6.89 19.50 -56.49 -1.10 5.79 16 26 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.08 1.43 8.12 -2.39 -0.02 1.41 16 28 H 0.06 1.44 6.47 -2.38 -0.02 1.42 16 29 H 0.07 1.27 8.12 -2.38 -0.02 1.25 16 30 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 31 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 33 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 34 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.06 1.87 6.55 -2.39 -0.02 1.86 16 36 H 0.07 2.46 7.42 -2.38 -0.02 2.45 16 37 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 38 H 0.03 1.51 6.18 -2.39 -0.01 1.50 16 39 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 40 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 41 H 0.14 5.29 6.20 -2.91 -0.02 5.28 16 42 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 43 H 0.19 4.47 8.06 -2.91 -0.02 4.45 16 44 H 0.22 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -62.02 375.55 1.48 -60.54 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.98 Total: 20.14 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 8.27 Total: 4.73 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -8.65 Total: -111.55 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.10 Total: 5.79 kcal Total: -62.02 1.48 -60.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493590278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.191 kcal (2) G-P(sol) polarization free energy of solvation -62.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds