Wall clock time and date at job start Tue Mar 31 2020 14:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00042 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00068 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00474 * 179.97438 * 15 13 12 17 17 H 1.09000 * 110.28918 * 324.33654 * 16 15 13 18 18 C 1.54267 * 110.31950 * 86.45967 * 16 15 13 19 19 C 1.54377 * 105.05979 * 118.89927 * 18 16 15 20 20 N 1.48557 * 104.59363 * 23.84960 * 19 18 16 21 21 C 1.46898 * 111.00005 * 200.95772 * 20 19 18 22 22 C 1.52997 * 109.47420 * 290.13129 * 21 20 19 23 23 F 1.39901 * 109.47382 * 59.99768 * 22 21 20 24 24 F 1.39905 * 109.47484 * 179.97438 * 22 21 20 25 25 F 1.39899 * 109.46932 * 299.99554 * 22 21 20 26 26 C 1.48559 * 104.22626 * 320.51642 * 20 19 18 27 27 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 29 29 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 30 30 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 31 31 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 32 32 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 33 33 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 34 34 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 35 35 H 0.96998 * 119.99765 * 0.02562 * 15 13 12 36 36 H 1.09001 * 110.32225 * 237.79866 * 18 16 15 37 37 H 1.09003 * 110.32256 * 359.90023 * 18 16 15 38 38 H 1.08996 * 110.41067 * 142.63161 * 19 18 16 39 39 H 1.09002 * 110.41142 * 264.95332 * 19 18 16 40 40 H 1.09001 * 109.47125 * 50.12924 * 21 20 19 41 41 H 1.08998 * 109.47408 * 170.12960 * 21 20 19 42 42 H 1.08993 * 110.41287 * 280.70658 * 26 20 19 43 43 H 1.09002 * 110.41184 * 158.25974 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0006 13 6 1.9827 -7.3713 -0.0005 14 8 0.7873 -7.5934 -0.0013 15 7 2.8585 -8.3958 -0.0004 16 6 2.3701 -9.7770 0.0003 17 1 1.4612 -9.8563 0.5967 18 6 2.1068 -10.2528 -1.4434 19 6 3.0559 -11.4528 -1.6496 20 7 3.3229 -11.9588 -0.2786 21 6 4.5578 -12.7535 -0.2420 22 6 4.3394 -14.0703 -0.9896 23 9 3.9977 -13.8006 -2.3192 24 9 5.5157 -14.8269 -0.9552 25 9 3.3052 -14.7874 -0.3786 26 6 3.4562 -10.7295 0.5448 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5568 -0.8903 29 1 0.6245 -2.5571 0.8896 30 1 2.8717 -3.6045 0.8895 31 1 2.8718 -3.6044 -0.8905 32 1 0.8531 -5.0451 0.8886 33 1 0.8537 -5.0446 -0.8913 34 1 3.3857 -5.9234 -0.0002 35 1 3.8121 -8.2186 -0.0001 36 1 1.0691 -10.5672 -1.5550 37 1 2.3392 -9.4581 -2.1522 38 1 2.5712 -12.2218 -2.2510 39 1 3.9820 -11.1279 -2.1239 40 1 5.3636 -12.1948 -0.7181 41 1 4.8241 -12.9636 0.7939 42 1 4.4457 -10.2910 0.4158 43 1 3.2729 -10.9540 1.5955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520471398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:38 Heat of formation + Delta-G solvation = -188.528622 kcal Electronic energy + Delta-G solvation = -26771.232125 eV Core-core repulsion = 22242.972577 eV Total energy + Delta-G solvation = -4528.259548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.51127 -48.07879 -47.93406 -40.37603 -39.02997 -35.63788 -34.71450 -33.35343 -32.17451 -30.97276 -29.30324 -27.94985 -26.40245 -23.73153 -23.19491 -22.02313 -21.42021 -20.75303 -20.31865 -19.01299 -18.89884 -18.20400 -17.92702 -16.69379 -16.44645 -16.26281 -15.43501 -15.34190 -15.01552 -14.83148 -14.70712 -14.48592 -14.44922 -14.21182 -14.14741 -14.07741 -13.99685 -13.94495 -13.44075 -13.24240 -12.36334 -12.29004 -12.19256 -11.98598 -11.83895 -11.77083 -11.65296 -11.14222 -10.89793 -10.74087 -10.63466 -10.15490 -9.87606 -9.46600 -9.37029 -9.28690 -9.15127 -8.66962 -8.38090 -6.02776 -4.06077 2.17890 2.62190 3.09420 3.28140 3.30754 3.31971 3.35777 3.37436 3.53872 3.89213 4.00982 4.29113 4.36416 4.44001 4.47281 4.62584 4.66864 4.71141 4.92849 5.08299 5.32799 5.34215 5.51155 5.60815 5.68840 5.79014 5.80945 5.93707 6.04156 6.16300 6.42387 6.49381 6.59987 6.75629 6.99675 7.01066 7.62209 7.75189 7.95818 8.08134 8.36567 8.69420 9.00339 9.57978 11.08405 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.042988 B = 0.001632 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.182453 B =17157.008925 C =17379.361974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.701 3.299 14 O -0.589 6.589 15 N -0.747 5.747 16 C 0.163 3.837 17 H 0.104 0.896 18 C -0.135 4.135 19 C 0.021 3.979 20 N -0.503 5.503 21 C -0.002 4.002 22 C 0.459 3.541 23 F -0.182 7.182 24 F -0.184 7.184 25 F -0.172 7.172 26 C 0.032 3.968 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.393 0.607 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.057 0.943 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.617 -29.288 -0.952 31.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.401 3.599 14 O -0.466 6.466 15 N -0.404 5.404 16 C 0.057 3.943 17 H 0.122 0.878 18 C -0.175 4.175 19 C -0.106 4.106 20 N -0.227 5.227 21 C -0.132 4.132 22 C 0.404 3.596 23 F -0.164 7.164 24 F -0.166 7.166 25 F -0.154 7.154 26 C -0.096 4.096 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.227 0.773 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.140 0.860 42 H 0.076 0.924 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.879 -29.727 -0.769 31.665 hybrid contribution 2.090 1.371 -0.451 2.540 sum 12.969 -28.356 -1.220 31.205 Atomic orbital electron populations 1.69955 1.06040 1.26809 1.50385 1.25033 0.94869 0.99290 0.95278 0.86639 0.79554 0.83112 0.78551 1.20271 1.21259 1.20273 1.21160 0.92929 0.90961 1.51139 0.92729 1.19025 0.93856 0.90785 0.97716 1.21891 0.99791 0.93352 1.00786 1.21524 0.91277 0.84105 1.01935 1.45400 1.10458 1.04458 1.79205 1.15999 0.85309 0.80744 0.77891 1.90935 1.14039 1.84036 1.57610 1.45234 1.08801 1.04841 1.81522 1.21388 0.97397 0.79055 0.96494 0.87797 1.22813 1.00714 0.96867 0.97076 1.23509 0.99512 0.97952 0.89674 1.65349 1.29603 1.18217 1.09554 1.23409 0.94636 0.91760 1.03417 1.20362 0.73959 0.87304 0.77932 1.93177 1.92213 1.93701 1.37306 1.93199 1.48398 1.78604 1.96383 1.93221 1.59317 1.80196 1.82631 1.23370 0.98284 0.88889 0.99047 0.92856 0.96229 0.96226 0.92780 0.92806 0.91906 0.91919 0.77360 0.77330 0.89825 0.90192 0.88719 0.92930 0.89782 0.85956 0.92435 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.13 2.33 5.67 -4.04 -0.02 2.31 16 12 N -0.74 -10.09 5.56 -65.22 -0.36 -10.45 16 13 C 0.70 9.91 8.56 -86.92 -0.74 9.17 16 14 O -0.59 -10.99 16.04 5.29 0.08 -10.91 16 15 N -0.75 -6.93 5.05 -57.32 -0.29 -7.22 16 16 C 0.16 1.40 3.36 -66.55 -0.22 1.18 16 17 H 0.10 1.13 7.64 -51.93 -0.40 0.73 16 18 C -0.14 -1.15 6.78 -25.35 -0.17 -1.32 16 19 C 0.02 0.14 5.20 -2.18 -0.01 0.13 16 20 N -0.50 -3.20 5.29 -229.98 -1.22 -4.42 16 21 C 0.00 -0.01 4.93 -3.83 -0.02 -0.03 16 22 C 0.46 3.06 3.27 37.16 0.12 3.18 16 23 F -0.18 -1.40 14.53 2.25 0.03 -1.37 16 24 F -0.18 -1.29 17.32 2.25 0.04 -1.25 16 25 F -0.17 -1.46 17.24 2.25 0.04 -1.42 16 26 C 0.03 0.18 6.19 -2.18 -0.01 0.17 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.39 4.15 8.49 -40.82 -0.35 3.80 16 35 H 0.39 2.46 8.36 -40.82 -0.34 2.12 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.74 7.95 -51.93 -0.41 0.33 16 38 H 0.09 0.70 6.73 -51.93 -0.35 0.35 16 39 H 0.05 0.31 7.83 -51.93 -0.41 -0.09 16 40 H 0.08 0.26 7.88 -51.93 -0.41 -0.15 16 41 H 0.12 0.36 8.13 -51.93 -0.42 -0.06 16 42 H 0.06 0.23 7.59 -51.93 -0.39 -0.17 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -33.32 365.72 -8.62 -41.94 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.40 Total: -0.34 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.78 Total: -0.47 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -1.13 Total: -47.99 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.11 Total: -4.04 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.32 -8.62 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520471398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.584 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds