Wall clock time and date at job start Tue Mar 31 2020 14:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48501 * 109.47129 * 240.00331 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47240 * 120.00269 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 N 1.34775 * 119.99585 * 179.72218 * 13 12 11 16 16 C 1.46507 * 119.99876 * 179.97438 * 15 13 12 17 17 H 1.08998 * 110.27218 * 32.91657 * 16 15 13 18 18 C 1.54595 * 110.30938 * 270.72138 * 16 15 13 19 19 C 1.54938 * 102.91890 * 219.12665 * 18 16 15 20 20 N 1.48534 * 103.22707 * 37.41104 * 19 18 16 21 21 C 1.46903 * 110.99998 * 200.27627 * 20 19 18 22 22 C 1.52996 * 109.47467 * 287.39854 * 21 20 19 23 23 F 1.39907 * 109.47028 * 60.00029 * 22 21 20 24 24 F 1.39903 * 109.47156 * 179.97438 * 22 21 20 25 25 F 1.39896 * 109.47508 * 300.00119 * 22 21 20 26 26 C 1.47897 * 105.82366 * 320.79526 * 20 19 18 27 27 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 29 29 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 30 30 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 31 31 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 32 32 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 33 33 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 34 34 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 35 35 H 0.97000 * 120.00523 * 0.02562 * 15 13 12 36 36 H 1.09004 * 110.72322 * 337.48132 * 18 16 15 37 37 H 1.08996 * 110.72412 * 100.76888 * 18 16 15 38 38 H 1.09005 * 110.66836 * 278.97664 * 19 18 16 39 39 H 1.08999 * 110.80921 * 155.91646 * 19 18 16 40 40 H 1.08998 * 109.46951 * 47.39927 * 21 20 19 41 41 H 1.08998 * 109.47264 * 167.40077 * 21 20 19 42 42 H 1.08996 * 109.91625 * 265.97785 * 26 20 19 43 43 H 1.08997 * 109.91694 * 144.68254 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7879 -7.5935 -0.0087 15 7 2.8592 -8.3956 -0.0146 16 6 2.3709 -9.7768 -0.0207 17 1 1.4351 -9.8441 -0.5756 18 6 2.1765 -10.2837 1.4268 19 6 2.6696 -11.7505 1.3493 20 7 3.8234 -11.6724 0.4172 21 6 4.1266 -12.9903 -0.1567 22 6 4.7676 -13.8771 0.9127 23 9 3.8821 -14.0281 1.9853 24 9 5.0558 -15.1323 0.3662 25 9 5.9502 -13.2820 1.3646 26 6 3.4261 -10.7140 -0.6368 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.8714 -3.6047 0.8890 31 1 2.8727 -3.6038 -0.8910 32 1 0.8541 -5.0447 -0.8923 33 1 0.8534 -5.0450 0.8877 34 1 3.3862 -5.9232 -0.0026 35 1 3.8128 -8.2183 -0.0141 36 1 2.7870 -9.7078 2.1224 37 1 1.1251 -10.2448 1.7112 38 1 1.8911 -12.3972 0.9445 39 1 2.9901 -12.1036 2.3295 40 1 3.2052 -13.4540 -0.5088 41 1 4.8165 -12.8727 -0.9924 42 1 2.9976 -11.2499 -1.4837 43 1 4.2925 -10.1366 -0.9593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520471399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:40 Heat of formation + Delta-G solvation = -214.088701 kcal Electronic energy + Delta-G solvation = -26768.322325 eV Core-core repulsion = 22238.954409 eV Total energy + Delta-G solvation = -4529.367917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.02204 -48.58633 -48.48179 -41.27953 -39.82231 -37.01792 -35.64275 -35.16497 -33.27824 -32.31829 -29.86793 -28.90993 -27.86653 -24.95793 -24.14897 -22.47992 -22.27263 -22.22390 -21.61096 -19.51252 -19.44125 -19.33781 -18.53084 -18.37280 -17.59206 -16.82781 -16.61833 -16.48906 -16.01831 -15.66863 -15.51993 -15.42732 -15.24903 -15.17442 -14.98223 -14.89611 -14.68757 -14.63776 -14.25096 -13.86352 -13.74201 -13.68973 -13.42145 -13.06647 -12.86754 -12.69363 -12.53319 -12.41958 -12.38186 -12.33396 -11.89063 -11.64269 -11.61494 -11.28828 -11.12675 -10.53168 -10.35927 -9.79574 -9.66796 -8.17768 -6.29248 1.42757 1.45788 1.53536 1.66216 1.81144 2.16166 2.43250 2.53153 2.89646 3.11273 3.15799 3.30901 3.38996 3.56051 3.72488 4.08725 4.19510 4.20846 4.22013 4.25838 4.27460 4.36837 4.58789 4.61651 4.74534 4.84301 4.95981 4.98549 5.03327 5.10586 5.19284 5.48461 5.51310 5.56600 5.61589 5.64754 5.73382 5.86108 6.04279 6.24420 6.87929 7.14047 7.40152 7.61134 8.94011 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.038563 B = 0.001653 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.902205 B =16938.689527 C =17260.154158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.730 5.730 13 C 0.699 3.301 14 O -0.639 6.639 15 N -0.722 5.722 16 C 0.153 3.847 17 H 0.083 0.917 18 C -0.133 4.133 19 C 0.031 3.969 20 N -0.521 5.521 21 C 0.003 3.997 22 C 0.456 3.544 23 F -0.191 7.191 24 F -0.188 7.188 25 F -0.186 7.186 26 C 0.043 3.957 27 H 0.263 0.737 28 H -0.007 1.007 29 H -0.008 1.008 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.412 0.588 35 H 0.413 0.587 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.677 -31.367 -1.251 33.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.026 3.974 12 N -0.386 5.386 13 C 0.398 3.602 14 O -0.521 6.521 15 N -0.379 5.379 16 C 0.046 3.954 17 H 0.101 0.899 18 C -0.173 4.173 19 C -0.096 4.096 20 N -0.246 5.246 21 C -0.127 4.127 22 C 0.401 3.599 23 F -0.173 7.173 24 F -0.169 7.169 25 F -0.167 7.167 26 C -0.084 4.084 27 H 0.071 0.929 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.248 0.752 35 H 0.251 0.749 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.161 0.839 42 H 0.102 0.898 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.949 -31.302 -0.976 33.519 hybrid contribution 0.022 0.758 0.012 0.758 sum 11.971 -30.544 -0.964 32.821 Atomic orbital electron populations 1.70105 1.07920 1.27817 1.51632 1.26028 0.95759 1.03555 0.94832 0.85468 0.78173 0.77946 0.79243 1.19004 1.21232 1.19085 1.21659 0.93760 0.92011 1.50506 0.91500 1.18949 0.94488 0.92974 0.95094 1.21585 0.98412 0.91720 1.02111 1.21052 0.91341 0.84660 1.00385 1.45031 1.10837 1.03615 1.79115 1.16166 0.85105 0.81387 0.77502 1.90891 1.16438 1.84781 1.59994 1.45018 1.09226 1.04086 1.79540 1.21646 0.97680 0.79598 0.96441 0.89910 1.22908 1.01591 0.95772 0.97023 1.23503 0.91473 0.96411 0.98249 1.64664 1.37998 1.06499 1.15421 1.23522 1.04282 0.90069 0.94827 1.20746 0.76870 0.79369 0.82908 1.93159 1.68638 1.95861 1.59634 1.93189 1.93873 1.44326 1.85551 1.93189 1.49508 1.83555 1.90470 1.23097 0.98596 0.93650 0.93094 0.92851 0.98894 0.98996 0.91438 0.91283 0.93504 0.93676 0.75162 0.74939 0.90814 0.91275 0.91566 0.89211 0.87757 0.83920 0.89778 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 11 C 0.15 5.28 5.67 86.38 0.49 5.77 16 12 N -0.73 -19.46 5.56 -478.53 -2.66 -22.12 16 13 C 0.70 19.57 8.56 179.05 1.53 21.10 16 14 O -0.64 -24.20 15.99 -3.98 -0.06 -24.27 16 15 N -0.72 -12.82 5.06 -453.61 -2.30 -15.11 16 16 C 0.15 2.37 3.34 45.87 0.15 2.52 16 17 H 0.08 1.62 7.56 -2.39 -0.02 1.60 16 18 C -0.13 -2.15 6.78 31.80 0.22 -1.93 16 19 C 0.03 0.37 5.41 86.65 0.47 0.84 16 20 N -0.52 -5.16 5.17 -883.04 -4.56 -9.72 16 21 C 0.00 0.02 4.83 86.30 0.42 0.43 16 22 C 0.46 5.27 3.28 71.98 0.24 5.51 16 23 F -0.19 -2.71 14.67 44.97 0.66 -2.05 16 24 F -0.19 -2.33 17.32 44.97 0.78 -1.55 16 25 F -0.19 -2.88 17.24 44.97 0.78 -2.10 16 26 C 0.04 0.36 6.43 86.45 0.56 0.92 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.41 8.03 8.49 -92.71 -0.79 7.24 16 35 H 0.41 4.78 8.37 -92.71 -0.78 4.00 16 36 H 0.07 1.32 8.06 -2.38 -0.02 1.30 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 0.65 7.81 -2.38 -0.02 0.63 16 39 H 0.09 1.21 6.73 -2.39 -0.02 1.19 16 40 H 0.10 0.31 7.83 -2.39 -0.02 0.29 16 41 H 0.14 0.31 8.08 -2.39 -0.02 0.29 16 42 H 0.08 0.43 7.77 -2.39 -0.02 0.41 16 43 H 0.11 0.68 7.65 -2.39 -0.02 0.67 16 Total: -1.00 -73.72 365.65 -0.50 -74.22 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -0.52 Total: 10.55 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.07 Total: 3.25 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -9.24 Total: -103.68 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 2.21 Total: -5.71 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.72 -0.50 -74.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520471399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.866 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds