Wall clock time and date at job start Tue Mar 31 2020 13:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46989 * 2 1 4 4 C 1.37101 * 120.00179 * 263.58793 * 3 2 1 5 5 H 1.07995 * 119.99781 * 190.36498 * 4 3 2 6 6 C 1.38951 * 119.99981 * 10.35535 * 4 3 2 7 7 N 1.31413 * 119.99683 * 17.67315 * 6 4 3 8 8 Si 1.86801 * 119.99976 * 197.66859 * 6 4 3 9 9 H 1.48494 * 109.46801 * 90.00364 * 8 6 4 10 10 H 1.48501 * 109.46683 * 210.00285 * 8 6 4 11 11 H 1.48499 * 109.46856 * 330.00090 * 8 6 4 12 12 C 1.34776 * 119.99646 * 83.58075 * 3 2 1 13 13 O 1.21291 * 119.99949 * 6.02230 * 12 3 2 14 14 C 1.50707 * 119.99705 * 186.01968 * 12 3 2 15 15 C 1.50696 * 110.01855 * 293.66957 * 14 12 3 16 16 C 1.38217 * 119.97303 * 350.33986 * 15 14 12 17 17 C 1.38473 * 120.01902 * 179.76705 * 16 15 14 18 18 F 1.35102 * 120.00756 * 180.22651 * 17 16 15 19 19 C 1.38420 * 119.98059 * 0.52781 * 17 16 15 20 20 C 1.38421 * 119.94580 * 359.72481 * 19 17 16 21 21 F 1.35102 * 120.01165 * 179.97438 * 20 19 17 22 22 C 1.38204 * 119.97736 * 170.61174 * 15 14 12 23 23 C 1.53875 * 110.02976 * 172.22877 * 14 12 3 24 24 C 1.54267 * 106.59815 * 240.71505 * 23 14 12 25 25 C 1.54887 * 104.19671 * 23.61305 * 24 23 14 26 26 C 1.54260 * 110.03025 * 55.06641 * 14 12 3 27 27 H 1.09006 * 109.46704 * 181.44503 * 1 2 3 28 28 H 1.08996 * 109.46797 * 301.44348 * 1 2 3 29 29 H 1.09000 * 109.47404 * 61.44940 * 1 2 3 30 30 H 1.09007 * 109.46941 * 240.00482 * 2 1 3 31 31 H 1.09000 * 109.47674 * 120.00413 * 2 1 3 32 32 H 0.97004 * 119.99206 * 179.97438 * 7 6 4 33 33 H 1.07993 * 119.98949 * 359.97438 * 16 15 14 34 34 H 1.07996 * 120.02552 * 179.70174 * 19 17 16 35 35 H 1.08001 * 119.98269 * 359.97438 * 22 15 14 36 36 H 1.09007 * 110.03515 * 0.02562 * 23 14 12 37 37 H 1.09004 * 110.03066 * 121.42730 * 23 14 12 38 38 H 1.08996 * 110.48391 * 264.92960 * 24 23 14 39 39 H 1.09002 * 110.48156 * 142.28872 * 24 23 14 40 40 H 1.08994 * 110.75698 * 203.74595 * 25 24 23 41 41 H 1.09002 * 110.75814 * 80.36793 * 25 24 23 42 42 H 1.09003 * 110.48427 * 214.34952 * 26 14 12 43 43 H 1.09005 * 110.48736 * 336.85409 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3718 1.9834 -1.1799 5 1 2.8858 2.9331 -1.1686 6 6 2.0689 1.3716 -2.3901 7 7 1.1626 0.4212 -2.4372 8 14 2.9500 1.9003 -3.9502 9 1 4.1763 1.0818 -4.1276 10 1 2.0515 1.7051 -5.1163 11 1 3.3223 3.3341 -3.8467 12 6 2.1199 2.0600 1.1599 13 8 1.9122 1.4954 2.2131 14 6 2.4915 3.5205 1.1482 15 6 3.9049 3.6892 0.6534 16 6 4.7139 2.5815 0.4837 17 6 6.0112 2.7350 0.0245 18 9 6.8004 1.6517 -0.1457 19 6 6.5013 3.9992 -0.2542 20 6 5.6918 5.1082 -0.0789 21 9 6.1689 6.3428 -0.3500 22 6 4.3930 4.9519 0.3750 23 6 2.3530 4.1109 2.5624 24 6 1.3004 5.2349 2.4696 25 6 0.4559 4.8626 1.2258 26 6 1.5181 4.3062 0.2455 27 1 -0.3633 -1.0274 0.0259 28 1 -0.3633 0.5361 0.8767 29 1 -0.3634 0.4911 -0.9027 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.9509 -0.0056 -3.2822 33 1 4.3331 1.5957 0.7061 34 1 7.5146 4.1202 -0.6078 35 1 3.7611 5.8170 0.5118 36 1 2.0175 3.3410 3.2573 37 1 3.3083 4.5201 2.8913 38 1 1.7852 6.2006 2.3265 39 1 0.6772 5.2485 3.3638 40 1 -0.0289 5.7456 0.8096 41 1 -0.2797 4.0972 1.4733 42 1 2.0380 5.1220 -0.2569 43 1 1.0556 3.6426 -0.4852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528179828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:47 Heat of formation + Delta-G solvation = -90.991945 kcal Electronic energy + Delta-G solvation = -29577.376234 eV Core-core repulsion = 25451.822667 eV Total energy + Delta-G solvation = -4125.553567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.80818 -48.66162 -40.48283 -37.92028 -36.56011 -35.05495 -31.88605 -31.50121 -30.16312 -29.64439 -28.10176 -27.55669 -24.94450 -23.11986 -22.54614 -22.07026 -20.47763 -19.95991 -18.84218 -17.89344 -17.01936 -16.49875 -16.19651 -15.74072 -15.61276 -15.28182 -15.12139 -15.03442 -14.62892 -14.38229 -14.17507 -13.89080 -13.58603 -13.02895 -12.70272 -12.53742 -12.30667 -12.07264 -11.84757 -11.77666 -11.54560 -11.37834 -11.18348 -10.88092 -10.87437 -10.75265 -10.62693 -10.53081 -10.46579 -10.39103 -10.20372 -10.05325 -9.78931 -8.94082 -8.58190 -8.40708 -8.32081 -7.83394 -6.43348 -3.96172 1.25945 1.30184 3.04129 3.16475 3.17964 3.64689 3.69638 3.99148 4.11069 4.51656 4.75328 4.76955 4.98072 5.04096 5.11217 5.16513 5.23332 5.40162 5.50616 5.84384 5.91321 5.96989 6.02537 6.02970 6.05653 6.09823 6.20996 6.28910 6.33224 6.40219 6.47770 6.54284 6.66071 6.70693 6.78950 6.81306 6.83336 6.95644 7.00360 7.07680 7.27316 7.41474 7.67685 7.73279 8.36522 8.98277 9.43900 9.83319 10.51961 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.007614 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.651690 B = 3676.497903 C = 4888.805280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.129 3.871 3 N -0.433 5.433 4 C -0.329 4.329 5 H 0.106 0.894 6 C 0.039 3.961 7 N -0.856 5.856 8 Si 0.908 3.092 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.460 3.540 13 O -0.603 6.603 14 C -0.025 4.025 15 C 0.011 3.989 16 C -0.128 4.128 17 C 0.127 3.873 18 F -0.134 7.134 19 C -0.203 4.203 20 C 0.120 3.880 21 F -0.138 7.138 22 C -0.162 4.162 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.116 4.116 27 H 0.033 0.967 28 H 0.024 0.976 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.034 0.966 32 H 0.268 0.732 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 7.538 2.618 8.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.006 3.994 3 N -0.150 5.150 4 C -0.456 4.456 5 H 0.123 0.877 6 C -0.166 4.166 7 N -0.494 5.494 8 Si 0.734 3.266 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.192 1.192 12 C 0.248 3.752 13 O -0.490 6.490 14 C -0.028 4.028 15 C 0.010 3.990 16 C -0.147 4.147 17 C 0.107 3.893 18 F -0.113 7.113 19 C -0.223 4.223 20 C 0.100 3.900 21 F -0.117 7.117 22 C -0.181 4.181 23 C -0.148 4.148 24 C -0.159 4.159 25 C -0.161 4.161 26 C -0.153 4.153 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.571 7.092 2.919 8.460 hybrid contribution 0.720 0.208 -1.209 1.423 sum 4.291 7.301 1.710 8.639 Atomic orbital electron populations 1.21951 0.96892 0.99317 1.01474 1.21354 0.94339 0.83019 1.00673 1.43811 1.54509 1.11369 1.05278 1.19864 1.35991 1.07087 0.82698 0.87681 1.25165 0.95574 0.96719 0.99139 1.70098 1.27425 1.25162 1.26705 0.86194 0.79587 0.79501 0.81286 1.20128 1.20783 1.19248 1.19532 0.84019 0.87505 0.84129 1.90506 1.57948 1.69523 1.31044 1.20165 0.90498 0.95802 0.96315 1.19294 0.94783 0.91150 0.93799 1.21328 0.91643 1.01311 1.00455 1.17223 0.89123 0.82470 1.00446 1.91503 1.73545 1.53156 1.93084 1.20854 1.01935 0.90811 1.08693 1.17122 0.92655 0.79262 1.00917 1.91486 1.88580 1.39996 1.91630 1.20937 0.94249 0.98758 1.04173 1.22242 0.98815 0.98307 0.95388 1.22353 0.97338 0.97914 0.98258 1.22501 0.97865 1.00180 0.95579 1.22729 0.95644 0.99149 0.97812 0.94832 0.95662 0.89762 0.87764 0.94771 0.92081 0.83566 0.84101 0.84172 0.88893 0.92099 0.92188 0.91990 0.91918 0.91491 0.91543 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.70 37.16 0.36 -2.70 16 2 C 0.13 3.00 5.29 -4.04 -0.02 2.98 16 3 N -0.43 -9.98 2.10 -114.80 -0.24 -10.22 16 4 C -0.33 -7.51 5.92 -14.93 -0.09 -7.60 16 5 H 0.11 2.33 4.30 -52.49 -0.23 2.10 16 6 C 0.04 0.90 5.07 -17.47 -0.09 0.81 16 7 N -0.86 -20.26 8.28 55.50 0.46 -19.80 16 8 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 9 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 12 C 0.46 10.27 4.79 -10.98 -0.05 10.21 16 13 O -0.60 -15.00 14.90 5.55 0.08 -14.92 16 14 C -0.02 -0.45 0.47 -155.70 -0.07 -0.52 16 15 C 0.01 0.19 2.93 -104.64 -0.31 -0.12 16 16 C -0.13 -2.42 7.58 -39.50 -0.30 -2.72 16 17 C 0.13 2.19 7.30 -39.43 -0.29 1.90 16 18 F -0.13 -2.35 17.27 2.25 0.04 -2.31 16 19 C -0.20 -3.10 10.01 -39.45 -0.39 -3.49 16 20 C 0.12 1.82 7.30 -39.43 -0.29 1.53 16 21 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 22 C -0.16 -2.51 8.48 -39.51 -0.34 -2.84 16 23 C -0.11 -1.81 5.91 -25.61 -0.15 -1.96 16 24 C -0.12 -1.67 6.83 -25.07 -0.17 -1.85 16 25 C -0.12 -1.86 6.91 -24.74 -0.17 -2.03 16 26 C -0.12 -2.00 4.64 -25.08 -0.12 -2.11 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.99 6.40 -51.93 -0.33 1.65 16 30 H 0.10 2.53 5.70 -51.93 -0.30 2.23 16 31 H 0.03 0.80 7.54 -51.93 -0.39 0.41 16 32 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 33 H 0.15 3.09 6.15 -52.49 -0.32 2.76 16 34 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.14 1.89 7.19 -52.49 -0.38 1.52 16 36 H 0.09 1.74 6.43 -51.93 -0.33 1.41 16 37 H 0.06 0.92 7.54 -51.93 -0.39 0.53 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.04 6.31 -51.93 -0.33 0.71 16 43 H 0.10 2.11 5.77 -51.93 -0.30 1.81 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -25.00 338.39 -7.43 -32.43 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.39 Total: 8.43 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.48 Total: -10.52 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: 0.22 Total: -30.02 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.08 Total: -14.92 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.08 Total: -4.28 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -25.00 -7.43 -32.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528179828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.562 kcal (2) G-P(sol) polarization free energy of solvation -25.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds