Wall clock time and date at job start Tue Mar 31 2020 13:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46989 * 2 1 4 4 C 1.37101 * 120.00179 * 263.58793 * 3 2 1 5 5 H 1.07995 * 119.99781 * 190.36498 * 4 3 2 6 6 C 1.38951 * 119.99981 * 10.35535 * 4 3 2 7 7 N 1.31413 * 119.99683 * 17.67315 * 6 4 3 8 8 Si 1.86801 * 119.99976 * 197.66859 * 6 4 3 9 9 H 1.48494 * 109.46801 * 90.00364 * 8 6 4 10 10 H 1.48501 * 109.46683 * 210.00285 * 8 6 4 11 11 H 1.48499 * 109.46856 * 330.00090 * 8 6 4 12 12 C 1.34776 * 119.99646 * 83.58075 * 3 2 1 13 13 O 1.21291 * 119.99949 * 6.02230 * 12 3 2 14 14 C 1.50707 * 119.99705 * 186.01968 * 12 3 2 15 15 C 1.50696 * 110.01855 * 293.66957 * 14 12 3 16 16 C 1.38217 * 119.97303 * 350.33986 * 15 14 12 17 17 C 1.38473 * 120.01902 * 179.76705 * 16 15 14 18 18 F 1.35102 * 120.00756 * 180.22651 * 17 16 15 19 19 C 1.38420 * 119.98059 * 0.52781 * 17 16 15 20 20 C 1.38421 * 119.94580 * 359.72481 * 19 17 16 21 21 F 1.35102 * 120.01165 * 179.97438 * 20 19 17 22 22 C 1.38204 * 119.97736 * 170.61174 * 15 14 12 23 23 C 1.53875 * 110.02976 * 172.22877 * 14 12 3 24 24 C 1.54267 * 106.59815 * 240.71505 * 23 14 12 25 25 C 1.54887 * 104.19671 * 23.61305 * 24 23 14 26 26 C 1.54260 * 110.03025 * 55.06641 * 14 12 3 27 27 H 1.09006 * 109.46704 * 181.44503 * 1 2 3 28 28 H 1.08996 * 109.46797 * 301.44348 * 1 2 3 29 29 H 1.09000 * 109.47404 * 61.44940 * 1 2 3 30 30 H 1.09007 * 109.46941 * 240.00482 * 2 1 3 31 31 H 1.09000 * 109.47674 * 120.00413 * 2 1 3 32 32 H 0.97004 * 119.99206 * 179.97438 * 7 6 4 33 33 H 1.07993 * 119.98949 * 359.97438 * 16 15 14 34 34 H 1.07996 * 120.02552 * 179.70174 * 19 17 16 35 35 H 1.08001 * 119.98269 * 359.97438 * 22 15 14 36 36 H 1.09007 * 110.03515 * 0.02562 * 23 14 12 37 37 H 1.09004 * 110.03066 * 121.42730 * 23 14 12 38 38 H 1.08996 * 110.48391 * 264.92960 * 24 23 14 39 39 H 1.09002 * 110.48156 * 142.28872 * 24 23 14 40 40 H 1.08994 * 110.75698 * 203.74595 * 25 24 23 41 41 H 1.09002 * 110.75814 * 80.36793 * 25 24 23 42 42 H 1.09003 * 110.48427 * 214.34952 * 26 14 12 43 43 H 1.09005 * 110.48736 * 336.85409 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3718 1.9834 -1.1799 5 1 2.8858 2.9331 -1.1686 6 6 2.0689 1.3716 -2.3901 7 7 1.1626 0.4212 -2.4372 8 14 2.9500 1.9003 -3.9502 9 1 4.1763 1.0818 -4.1276 10 1 2.0515 1.7051 -5.1163 11 1 3.3223 3.3341 -3.8467 12 6 2.1199 2.0600 1.1599 13 8 1.9122 1.4954 2.2131 14 6 2.4915 3.5205 1.1482 15 6 3.9049 3.6892 0.6534 16 6 4.7139 2.5815 0.4837 17 6 6.0112 2.7350 0.0245 18 9 6.8004 1.6517 -0.1457 19 6 6.5013 3.9992 -0.2542 20 6 5.6918 5.1082 -0.0789 21 9 6.1689 6.3428 -0.3500 22 6 4.3930 4.9519 0.3750 23 6 2.3530 4.1109 2.5624 24 6 1.3004 5.2349 2.4696 25 6 0.4559 4.8626 1.2258 26 6 1.5181 4.3062 0.2455 27 1 -0.3633 -1.0274 0.0259 28 1 -0.3633 0.5361 0.8767 29 1 -0.3634 0.4911 -0.9027 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.9509 -0.0056 -3.2822 33 1 4.3331 1.5957 0.7061 34 1 7.5146 4.1202 -0.6078 35 1 3.7611 5.8170 0.5118 36 1 2.0175 3.3410 3.2573 37 1 3.3083 4.5201 2.8913 38 1 1.7852 6.2006 2.3265 39 1 0.6772 5.2485 3.3638 40 1 -0.0289 5.7456 0.8096 41 1 -0.2797 4.0972 1.4733 42 1 2.0380 5.1220 -0.2569 43 1 1.0556 3.6426 -0.4852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528179828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:46 Heat of formation + Delta-G solvation = -100.583355 kcal Electronic energy + Delta-G solvation = -29577.792148 eV Core-core repulsion = 25451.822667 eV Total energy + Delta-G solvation = -4125.969482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.02137 -49.97424 -41.98865 -39.44376 -37.97630 -36.86106 -33.49756 -33.06395 -31.65041 -31.16455 -29.42293 -28.91945 -26.74421 -24.64398 -23.89404 -23.56660 -21.93758 -21.33810 -20.46724 -19.34151 -18.51575 -17.90501 -17.52229 -17.30409 -16.95499 -16.64842 -16.44940 -16.30426 -16.20264 -16.02769 -15.65094 -15.26233 -15.12660 -14.66600 -14.20410 -14.06404 -13.79874 -13.52770 -13.41918 -13.25119 -13.01258 -12.93547 -12.84520 -12.58374 -12.35854 -12.16993 -12.06424 -11.91345 -11.87769 -11.79307 -11.68066 -11.64524 -11.31983 -10.76383 -10.21384 -9.78086 -9.72045 -9.65926 -8.21786 -5.77751 -0.02204 0.00148 1.37580 1.47407 1.53475 1.98953 2.27951 2.34504 2.81387 2.91864 3.17293 3.39742 3.49482 3.77490 3.83402 3.89029 3.97583 4.14510 4.16777 4.41272 4.57362 4.62933 4.65807 4.70021 4.75080 4.79155 4.84919 4.89943 4.94534 4.97354 5.03909 5.09884 5.15989 5.17327 5.26907 5.35623 5.42387 5.44748 5.52240 5.56131 5.61043 5.77446 5.82671 5.88823 6.54605 7.18129 7.64949 8.04990 8.74762 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.007614 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.651690 B = 3676.497903 C = 4888.805280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.129 3.871 3 N -0.441 5.441 4 C -0.328 4.328 5 H 0.114 0.886 6 C 0.001 3.999 7 N -0.877 5.877 8 Si 0.959 3.041 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.258 1.258 12 C 0.453 3.547 13 O -0.638 6.638 14 C -0.022 4.022 15 C 0.000 4.000 16 C -0.150 4.150 17 C 0.116 3.884 18 F -0.141 7.141 19 C -0.191 4.191 20 C 0.129 3.871 21 F -0.128 7.128 22 C -0.150 4.150 23 C -0.109 4.109 24 C -0.111 4.111 25 C -0.121 4.121 26 C -0.113 4.113 27 H 0.051 0.949 28 H 0.013 0.987 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.112 0.888 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 10.859 2.038 12.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.006 3.994 3 N -0.157 5.157 4 C -0.455 4.455 5 H 0.132 0.868 6 C -0.201 4.201 7 N -0.516 5.516 8 Si 0.785 3.215 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.182 1.182 12 C 0.243 3.757 13 O -0.528 6.528 14 C -0.025 4.025 15 C -0.001 4.001 16 C -0.169 4.169 17 C 0.097 3.903 18 F -0.119 7.119 19 C -0.211 4.211 20 C 0.110 3.890 21 F -0.106 7.106 22 C -0.169 4.169 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.158 4.158 26 C -0.151 4.151 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.186 0.814 35 H 0.186 0.814 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.538 10.427 2.334 11.609 hybrid contribution 0.453 -0.871 -0.982 1.389 sum 4.991 9.556 1.352 10.865 Atomic orbital electron populations 1.21770 0.96006 1.00092 1.00065 1.21268 0.95008 0.83721 0.99402 1.43948 1.54633 1.11200 1.05962 1.20053 1.35629 1.07315 0.82522 0.86846 1.25784 0.96069 0.97059 1.01194 1.70169 1.28283 1.26048 1.27111 0.85396 0.78164 0.79425 0.78547 1.20971 1.20781 1.18201 1.20282 0.82956 0.89282 0.83208 1.90471 1.59282 1.70875 1.32153 1.20156 0.91491 0.92824 0.98057 1.19212 0.94148 0.91852 0.94844 1.21153 0.92954 1.00331 1.02483 1.17292 0.88637 0.83241 1.01130 1.91484 1.73541 1.53695 1.93211 1.21072 1.03123 0.89679 1.07185 1.17067 0.92391 0.79494 1.00066 1.91524 1.88415 1.39292 1.91411 1.21096 0.94690 0.98362 1.02721 1.22238 1.00606 0.98484 0.93379 1.22348 0.96393 0.98042 0.98000 1.22488 0.97043 1.00492 0.95813 1.22689 0.95975 0.99006 0.97436 0.93026 0.96824 0.91023 0.88758 0.96060 0.92152 0.87041 0.81402 0.81378 0.91969 0.90472 0.88913 0.90929 0.88958 0.94022 0.89090 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 9.70 71.98 0.70 -4.87 16 2 C 0.13 6.32 5.29 86.38 0.46 6.77 16 3 N -0.44 -21.15 2.10 -635.52 -1.33 -22.48 16 4 C -0.33 -15.20 5.92 84.04 0.50 -14.70 16 5 H 0.11 4.99 4.30 -2.91 -0.01 4.98 16 6 C 0.00 0.06 5.07 84.93 0.43 0.49 16 7 N -0.88 -42.42 8.28 21.66 0.18 -42.24 16 8 Si 0.96 38.25 29.59 68.60 2.03 40.28 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 12 C 0.45 20.96 4.79 87.66 0.42 21.38 16 13 O -0.64 -33.41 14.90 -3.06 -0.05 -33.46 16 14 C -0.02 -0.81 0.47 -52.95 -0.02 -0.83 16 15 C 0.00 0.01 2.93 -19.88 -0.06 -0.05 16 16 C -0.15 -5.67 7.58 22.32 0.17 -5.50 16 17 C 0.12 3.90 7.30 22.37 0.16 4.07 16 18 F -0.14 -4.89 17.27 44.97 0.78 -4.12 16 19 C -0.19 -5.24 10.01 22.36 0.22 -5.02 16 20 C 0.13 3.41 7.30 22.37 0.16 3.57 16 21 F -0.13 -3.11 17.27 44.97 0.78 -2.33 16 22 C -0.15 -4.09 8.48 22.32 0.19 -3.90 16 23 C -0.11 -3.47 5.91 31.32 0.19 -3.28 16 24 C -0.11 -2.70 6.83 31.67 0.22 -2.48 16 25 C -0.12 -3.37 6.91 31.88 0.22 -3.15 16 26 C -0.11 -3.72 4.64 31.67 0.15 -3.58 16 27 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 3.48 6.40 -2.39 -0.02 3.47 16 30 H 0.09 4.80 5.70 -2.38 -0.01 4.78 16 31 H 0.02 1.06 7.54 -2.39 -0.02 1.04 16 32 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 33 H 0.11 4.98 6.15 -2.91 -0.02 4.96 16 34 H 0.17 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.17 3.62 7.19 -2.91 -0.02 3.60 16 36 H 0.06 2.37 6.43 -2.38 -0.02 2.35 16 37 H 0.08 2.16 7.54 -2.38 -0.02 2.14 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 2.51 6.31 -2.39 -0.02 2.49 16 43 H 0.07 2.85 5.77 -2.38 -0.01 2.84 16 Total: -1.00 -56.08 338.39 7.53 -48.55 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 1.05 Total: 26.88 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.10 Total: -11.09 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -1.15 Total: -64.72 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.05 Total: -33.46 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 1.55 Total: -6.45 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -56.08 7.53 -48.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528179828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.036 kcal (2) G-P(sol) polarization free energy of solvation -56.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds