Wall clock time and date at job start Tue Mar 31 2020 13:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38351 * 127.15519 * 2 1 4 4 C 1.39770 * 126.56591 * 0.03212 * 3 2 1 5 5 H 1.08002 * 119.99957 * 0.25917 * 4 3 2 6 6 C 1.40081 * 120.00525 * 180.26143 * 4 3 2 7 7 N 1.30818 * 119.99470 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00441 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47146 * 89.99974 * 8 6 4 10 10 H 1.48503 * 109.47209 * 210.00148 * 8 6 4 11 11 H 1.48504 * 109.46912 * 329.99973 * 8 6 4 12 12 N 1.33097 * 106.86696 * 180.22396 * 3 2 1 13 13 N 1.28507 * 109.75091 * 359.78615 * 12 3 2 14 14 C 1.32389 * 110.20531 * 359.97438 * 13 12 3 15 15 S 1.76194 * 126.26306 * 179.97438 * 14 13 12 16 16 C 1.81003 * 99.99852 * 0.02562 * 15 14 13 17 17 C 1.53006 * 109.47271 * 179.97438 * 16 15 14 18 18 H 1.08998 * 110.53322 * 59.29724 * 17 16 15 19 19 C 1.55032 * 110.59965 * 182.13071 * 17 16 15 20 20 C 1.54958 * 102.10577 * 155.21605 * 19 17 16 21 21 C 1.53572 * 103.94877 * 339.14255 * 20 19 17 22 22 C 1.53735 * 110.21235 * 237.51544 * 21 20 19 23 23 C 1.55020 * 104.06232 * 216.53523 * 22 21 20 24 24 C 1.54941 * 102.81259 * 37.49163 * 23 22 21 25 25 C 1.53339 * 110.42035 * 119.32403 * 21 20 19 26 26 O 1.43282 * 108.01779 * 358.35288 * 21 20 19 27 27 H 1.09001 * 109.47132 * 270.17235 * 1 2 3 28 28 H 1.09000 * 109.46914 * 30.16634 * 1 2 3 29 29 H 1.08996 * 109.47436 * 150.17326 * 1 2 3 30 30 H 0.96996 * 119.99689 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47146 * 60.00427 * 16 15 14 32 32 H 1.08998 * 109.47342 * 300.00076 * 16 15 14 33 33 H 1.09004 * 110.90733 * 273.41906 * 19 17 16 34 34 H 1.08998 * 110.90708 * 36.98551 * 19 17 16 35 35 H 1.09006 * 110.52927 * 97.75596 * 20 19 17 36 36 H 1.08995 * 110.53547 * 220.52309 * 20 19 17 37 37 H 1.09001 * 110.50870 * 335.17904 * 22 21 20 38 38 H 1.08989 * 110.51320 * 97.89014 * 22 21 20 39 39 H 1.08997 * 110.74155 * 279.16085 * 23 22 21 40 40 H 1.08999 * 110.90201 * 155.89382 * 23 22 21 41 41 H 1.09002 * 110.47656 * 203.67238 * 24 23 22 42 42 H 1.08999 * 110.59613 * 81.09451 * 24 23 22 43 43 H 1.09006 * 110.07610 * 239.14660 * 25 21 20 44 44 H 1.08998 * 110.07557 * 0.62691 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3007 1.1027 0.0000 4 6 1.9089 2.4443 0.0006 5 1 0.8597 2.7005 0.0054 6 6 2.8769 3.4568 -0.0050 7 7 4.1478 3.1465 -0.0103 8 14 2.3533 5.2499 -0.0049 9 1 2.2208 5.7268 1.3952 10 1 3.3752 6.0641 -0.7106 11 1 1.0475 5.3842 -0.6992 12 7 3.5491 0.6412 -0.0050 13 7 3.5370 -0.6438 -0.0035 14 6 2.2904 -1.0894 0.0031 15 16 1.7872 -2.7780 0.0068 16 6 3.4057 -3.5883 0.0001 17 6 3.2160 -5.1065 0.0029 18 1 2.6473 -5.4224 -0.8717 19 6 4.5877 -5.8275 0.0512 20 6 4.2152 -7.1926 0.6827 21 6 2.8821 -6.9198 1.3946 22 6 2.9991 -7.2591 2.8895 23 6 1.6139 -7.8541 3.2502 24 6 1.2496 -8.6690 1.9837 25 6 1.7744 -7.8075 0.8147 26 8 2.5605 -5.5348 1.2176 27 1 -0.3633 0.0031 1.0277 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3634 -0.8915 -0.5111 30 1 4.8181 3.8475 -0.0139 31 1 3.9647 -3.2907 0.8873 32 1 3.9566 -3.2922 -0.8926 33 1 4.9927 -5.9605 -0.9520 34 1 5.2903 -5.2847 0.6835 35 1 4.0874 -7.9496 -0.0912 36 1 4.9753 -7.5022 1.3999 37 1 3.7856 -7.9957 3.0535 38 1 3.1910 -6.3580 3.4718 39 1 0.8859 -7.0612 3.4217 40 1 1.6853 -8.5057 4.1211 41 1 0.1695 -8.7957 1.9094 42 1 1.7466 -9.6390 1.9958 43 1 0.9703 -7.1894 0.4152 44 1 2.1794 -8.4467 0.0302 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530298732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:31 Heat of formation + Delta-G solvation = 7.517247 kcal Electronic energy + Delta-G solvation = -24801.017848 eV Core-core repulsion = 21265.869097 eV Total energy + Delta-G solvation = -3535.148750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46027 -40.39086 -36.47599 -33.66492 -33.28165 -32.35518 -31.15364 -29.27798 -28.99280 -27.05719 -26.40801 -25.46500 -23.14520 -21.48388 -20.98878 -20.73801 -20.25719 -19.77970 -17.32045 -16.62899 -16.22883 -16.05877 -15.52664 -15.40176 -14.68735 -14.51256 -14.25517 -14.15670 -13.70526 -13.52700 -13.27236 -13.02032 -12.91833 -12.35215 -12.21657 -12.14390 -11.77225 -11.61870 -11.42717 -11.36808 -11.28337 -11.24229 -10.93891 -10.89763 -10.87969 -10.67349 -10.55054 -10.35107 -10.15448 -9.67481 -9.58413 -9.57480 -8.64882 -8.36615 -8.33332 -6.74231 -6.62161 -4.53625 2.11072 2.91694 2.93887 3.07743 3.11252 3.40216 3.68824 3.89549 4.26316 4.28170 4.33608 4.45949 4.59594 4.68550 4.82184 4.85983 5.07569 5.13910 5.26717 5.33159 5.35945 5.41329 5.48617 5.56878 5.59633 5.64092 5.66174 5.68159 5.75702 5.83392 5.85449 5.92994 5.93402 6.03835 6.08281 6.09343 6.19180 6.20519 6.81619 6.92342 7.01963 7.27630 7.53210 7.93612 8.20931 8.73321 8.89967 10.30605 10.68295 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028991 B = 0.002567 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.596269 B =10906.552510 C =11313.956719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.515 5.515 3 C 0.345 3.655 4 C -0.448 4.448 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.738 5.738 8 Si 0.921 3.079 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.263 1.263 12 N -0.334 5.334 13 N -0.289 5.289 14 C 0.046 3.954 15 S -0.041 6.041 16 C -0.086 4.086 17 C 0.092 3.908 18 H 0.076 0.924 19 C -0.145 4.145 20 C -0.143 4.143 21 C 0.098 3.902 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.139 4.139 26 O -0.346 6.346 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.279 0.721 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 -19.792 1.587 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.217 5.217 3 C 0.101 3.899 4 C -0.488 4.488 5 H 0.102 0.898 6 C -0.147 4.147 7 N -0.362 5.362 8 Si 0.744 3.256 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.187 1.187 12 N -0.181 5.181 13 N -0.135 5.135 14 C -0.326 4.326 15 S 0.186 5.814 16 C -0.235 4.235 17 C 0.033 3.967 18 H 0.094 0.906 19 C -0.185 4.185 20 C -0.181 4.181 21 C 0.058 3.942 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.176 4.176 26 O -0.266 6.266 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.405 -20.093 1.710 20.451 hybrid contribution -0.371 1.459 -0.167 1.515 sum -3.776 -18.633 1.543 19.075 Atomic orbital electron populations 1.21486 0.78563 1.02620 1.01634 1.46044 1.06080 1.05360 1.64257 1.21620 0.84785 0.88429 0.95103 1.18090 0.94659 0.86464 1.49577 0.89838 1.25796 0.94347 1.01259 0.93322 1.70017 1.00696 1.34923 1.30557 0.86125 0.79372 0.80891 0.79168 1.19383 1.20010 1.18670 1.75437 1.15316 0.97905 1.29486 1.74518 1.15236 1.07589 1.16148 1.25469 0.91511 0.92944 1.22633 1.84556 1.10224 0.91078 1.95512 1.23333 0.98582 0.94255 1.07372 1.22895 0.92498 0.92471 0.88841 0.90604 1.23187 0.97508 0.95528 1.02247 1.23087 0.96974 0.97837 1.00162 1.22337 0.93299 0.82941 0.95635 1.22479 0.97616 1.01224 0.94127 1.22519 0.97093 0.99318 0.97254 1.22338 1.00708 0.98181 0.94729 1.22699 0.98822 0.98044 0.98065 1.89036 1.72128 1.23401 1.42005 0.92571 0.90407 0.91543 0.91034 0.88518 0.88000 0.89937 0.89889 0.90550 0.90307 0.90703 0.90307 0.91028 0.91671 0.91682 0.91804 0.90577 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.94 10.87 59.85 0.65 2.59 16 2 N -0.52 -12.88 3.26 -123.18 -0.40 -13.28 16 3 C 0.35 9.89 7.53 -154.81 -1.17 8.73 16 4 C -0.45 -12.09 9.04 -38.32 -0.35 -12.44 16 5 H 0.08 2.04 7.31 -52.49 -0.38 1.66 16 6 C 0.08 2.03 5.50 -17.29 -0.10 1.93 16 7 N -0.74 -20.60 11.94 55.56 0.66 -19.93 16 8 Si 0.92 18.80 29.56 -169.99 -5.03 13.77 16 9 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 10 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 12 N -0.33 -10.28 10.48 31.26 0.33 -9.95 16 13 N -0.29 -8.13 11.62 30.89 0.36 -7.78 16 14 C 0.05 1.15 8.09 -87.27 -0.71 0.45 16 15 S -0.04 -0.79 21.57 -107.50 -2.32 -3.11 16 16 C -0.09 -1.43 5.00 37.16 0.19 -1.24 16 17 C 0.09 1.19 3.34 -25.65 -0.09 1.11 16 18 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.15 -1.50 6.60 -24.62 -0.16 -1.66 16 20 C -0.14 -1.27 6.26 -25.40 -0.16 -1.43 16 21 C 0.10 1.03 1.06 -89.77 -0.10 0.94 16 22 C -0.12 -1.13 6.04 -25.28 -0.15 -1.28 16 23 C -0.12 -1.10 6.91 -24.64 -0.17 -1.27 16 24 C -0.12 -0.99 6.84 -24.97 -0.17 -1.16 16 25 C -0.14 -1.29 6.28 -25.82 -0.16 -1.45 16 26 O -0.35 -4.85 10.23 -35.23 -0.36 -5.21 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.38 7.54 -51.93 -0.39 0.99 16 29 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 30 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 31 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 32 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.90 8.05 -51.93 -0.42 0.49 16 35 H 0.08 0.57 7.11 -51.93 -0.37 0.20 16 36 H 0.08 0.63 7.36 -51.93 -0.38 0.24 16 37 H 0.07 0.59 7.49 -51.93 -0.39 0.21 16 38 H 0.08 0.87 8.07 -51.94 -0.42 0.45 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.81 7.97 -51.93 -0.41 0.39 16 44 H 0.07 0.54 7.09 -51.93 -0.37 0.17 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -33.66 366.74 -10.75 -44.41 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.88 Total: 1.75 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.64 Total: -6.20 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.95 Total: -50.94 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.36 Total: -5.21 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.32 Total: -3.11 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.66 -10.75 -44.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530298732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.923 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds