Wall clock time and date at job start Tue Mar 31 2020 13:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38356 * 127.15418 * 2 1 4 4 C 1.39778 * 126.56172 * 0.02562 * 3 2 1 5 5 H 1.07995 * 119.99928 * 0.26417 * 4 3 2 6 6 C 1.40083 * 119.99583 * 180.26720 * 4 3 2 7 7 N 1.30819 * 120.00168 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99562 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47269 * 119.99965 * 8 6 4 11 11 H 1.48509 * 109.46677 * 239.99320 * 8 6 4 12 12 N 1.33098 * 106.86794 * 180.22744 * 3 2 1 13 13 N 1.28511 * 109.74841 * 359.77341 * 12 3 2 14 14 C 1.32384 * 110.20415 * 0.02562 * 13 12 3 15 15 S 1.76206 * 126.25696 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99929 * 0.02562 * 15 14 13 17 17 C 1.52999 * 109.46638 * 179.97438 * 16 15 14 18 18 H 1.08995 * 110.54037 * 303.62349 * 17 16 15 19 19 C 1.55045 * 110.59704 * 180.62272 * 17 16 15 20 20 C 1.54952 * 102.10865 * 204.78617 * 19 17 16 21 21 C 1.53579 * 103.94595 * 20.86913 * 20 19 17 22 22 C 1.53729 * 110.18780 * 122.49418 * 21 20 19 23 23 C 1.55017 * 104.06630 * 96.85066 * 22 21 20 24 24 C 1.54931 * 102.81466 * 37.48722 * 23 22 21 25 25 C 1.53354 * 110.38708 * 240.64989 * 21 20 19 26 26 O 1.43131 * 107.93983 * 1.76105 * 21 20 19 27 27 H 1.09001 * 109.46904 * 270.17377 * 1 2 3 28 28 H 1.09003 * 109.47048 * 30.17355 * 1 2 3 29 29 H 1.08995 * 109.47319 * 150.17217 * 1 2 3 30 30 H 0.96997 * 120.00016 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47216 * 300.00172 * 16 15 14 32 32 H 1.09001 * 109.46620 * 60.00275 * 16 15 14 33 33 H 1.09000 * 110.90394 * 322.99406 * 19 17 16 34 34 H 1.09005 * 110.90345 * 86.58591 * 19 17 16 35 35 H 1.08993 * 110.53169 * 262.25313 * 20 19 17 36 36 H 1.08996 * 110.65188 * 139.54091 * 20 19 17 37 37 H 1.09001 * 110.51212 * 215.48977 * 22 21 20 38 38 H 1.08992 * 110.51236 * 338.20263 * 22 21 20 39 39 H 1.09004 * 110.74167 * 279.16029 * 23 22 21 40 40 H 1.08996 * 110.90604 * 155.89770 * 23 22 21 41 41 H 1.09006 * 110.48705 * 203.67578 * 24 23 22 42 42 H 1.09001 * 110.59514 * 81.09584 * 24 23 22 43 43 H 1.08998 * 110.06768 * 359.09285 * 25 21 20 44 44 H 1.08995 * 110.07078 * 120.57509 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7005 0.0053 6 6 2.8768 3.4568 -0.0052 7 7 4.1477 3.1466 -0.0105 8 14 2.3530 5.2499 -0.0038 9 1 0.8704 5.3325 0.0031 10 1 2.8924 5.9223 1.2054 11 1 2.8802 5.9204 -1.2196 12 7 3.5490 0.6413 -0.0051 13 7 3.5370 -0.6438 -0.0033 14 6 2.2904 -1.0893 0.0024 15 16 1.7873 -2.7780 0.0060 16 6 3.4058 -3.5882 0.0007 17 6 3.2161 -5.1064 0.0036 18 1 2.6113 -5.4146 0.8564 19 6 4.5886 -5.8275 0.0149 20 6 4.2408 -7.1981 -0.6188 21 6 2.9366 -6.9315 -1.3847 22 6 3.1124 -7.2841 -2.8706 23 6 2.5368 -8.7186 -2.9881 24 6 1.3250 -8.6828 -2.0234 25 6 1.8075 -7.8152 -0.8407 26 8 2.6120 -5.5457 -1.2336 27 1 -0.3633 0.0031 1.0277 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3634 -0.8915 -0.5111 30 1 4.8180 3.8476 -0.0141 31 1 3.9574 -3.2922 -0.8917 32 1 3.9640 -3.2904 0.8883 33 1 5.3152 -5.2903 -0.5946 34 1 4.9542 -5.9519 1.0342 35 1 4.0828 -7.9484 0.1558 36 1 5.0276 -7.5161 -1.3028 37 1 2.5472 -6.5935 -3.4965 38 1 4.1675 -7.2723 -3.1437 39 1 3.2693 -9.4565 -2.6606 40 1 2.2124 -8.9252 -4.0080 41 1 1.0785 -9.6886 -1.6830 42 1 0.4633 -8.2229 -2.5072 43 1 2.1833 -8.4511 -0.0392 44 1 0.9905 -7.1943 -0.4734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530298733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:34 Heat of formation + Delta-G solvation = 7.364007 kcal Electronic energy + Delta-G solvation = -24753.388428 eV Core-core repulsion = 21218.233033 eV Total energy + Delta-G solvation = -3535.155395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46540 -40.41583 -36.55352 -33.66587 -33.28464 -32.36750 -31.08137 -29.27985 -29.01597 -27.03753 -26.40843 -25.46811 -23.24013 -21.76970 -20.82045 -20.64185 -20.17095 -19.77798 -17.32299 -16.90115 -16.22741 -16.00290 -15.46483 -15.39175 -14.67903 -14.59729 -14.44586 -13.96351 -13.68723 -13.45522 -13.25328 -13.08366 -12.95244 -12.28011 -12.21280 -12.11127 -11.83886 -11.72699 -11.44977 -11.35089 -11.30325 -11.30155 -10.98430 -10.93534 -10.89604 -10.60484 -10.57964 -10.32456 -10.15824 -9.67298 -9.59758 -9.57343 -8.65067 -8.36849 -8.33780 -6.74845 -6.62406 -4.53774 2.10786 2.90859 2.92709 3.07858 3.12507 3.39908 3.68432 3.89457 4.26038 4.27920 4.31611 4.45748 4.59130 4.65975 4.80303 4.83895 5.07037 5.12878 5.25891 5.33655 5.35702 5.40278 5.44028 5.49657 5.59931 5.62520 5.65039 5.67230 5.75185 5.83740 5.86741 5.92133 5.92744 5.98570 6.08178 6.10872 6.14146 6.20097 6.81459 6.92516 7.02509 7.27386 7.52992 7.93365 8.21239 8.73256 8.89799 10.30380 10.68041 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030657 B = 0.002509 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.100562 B =11157.059482 C =11533.910034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.515 5.515 3 C 0.345 3.655 4 C -0.447 4.447 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.738 5.738 8 Si 0.920 3.080 9 H -0.262 1.262 10 H -0.272 1.272 11 H -0.272 1.272 12 N -0.334 5.334 13 N -0.289 5.289 14 C 0.047 3.953 15 S -0.043 6.043 16 C -0.086 4.086 17 C 0.092 3.908 18 H 0.077 0.923 19 C -0.145 4.145 20 C -0.142 4.142 21 C 0.098 3.902 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.139 4.139 26 O -0.348 6.348 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.278 0.722 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 -20.040 -1.557 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.217 5.217 3 C 0.100 3.900 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.147 4.147 7 N -0.362 5.362 8 Si 0.744 3.256 9 H -0.185 1.185 10 H -0.198 1.198 11 H -0.198 1.198 12 N -0.181 5.181 13 N -0.135 5.135 14 C -0.325 4.325 15 S 0.184 5.816 16 C -0.235 4.235 17 C 0.033 3.967 18 H 0.094 0.906 19 C -0.185 4.185 20 C -0.180 4.180 21 C 0.058 3.942 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.177 4.177 26 O -0.268 6.268 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.191 -20.341 -1.705 20.660 hybrid contribution -0.374 1.474 0.194 1.533 sum -3.564 -18.868 -1.511 19.261 Atomic orbital electron populations 1.21489 0.78558 1.02706 1.01576 1.46044 1.06083 1.05355 1.64247 1.21636 0.84786 0.88444 0.95108 1.18129 0.94683 0.86442 1.49493 0.89787 1.25800 0.94348 1.01271 0.93319 1.70026 1.00699 1.34819 1.30633 0.86075 0.79824 0.81072 0.78606 1.18549 1.19756 1.19756 1.75440 1.15318 0.97898 1.29467 1.74519 1.15229 1.07590 1.16132 1.25451 0.91513 0.92896 1.22646 1.84535 1.10333 0.91180 1.95513 1.23327 0.98535 0.94238 1.07421 1.22893 0.93108 0.92415 0.88251 0.90552 1.23189 0.97574 0.95457 1.02237 1.23095 0.97236 0.97747 0.99888 1.22331 0.93353 0.82785 0.95714 1.22458 1.01531 0.96693 0.94711 1.22484 0.97508 0.96487 0.99633 1.22338 0.98102 0.99456 0.96084 1.22675 0.98821 0.98070 0.98085 1.88997 1.74640 1.23154 1.39963 0.92602 0.90399 0.91487 0.91086 0.88467 0.87969 0.89880 0.89919 0.90601 0.90301 0.90260 0.91040 0.91512 0.91330 0.91777 0.91390 0.91356 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.93 10.87 59.85 0.65 2.59 16 2 N -0.52 -12.87 3.26 -123.17 -0.40 -13.27 16 3 C 0.35 9.88 7.53 -154.81 -1.17 8.72 16 4 C -0.45 -12.07 9.04 -38.31 -0.35 -12.42 16 5 H 0.08 2.06 7.31 -52.49 -0.38 1.68 16 6 C 0.08 2.02 5.50 -17.29 -0.10 1.93 16 7 N -0.74 -20.58 11.94 55.56 0.66 -19.92 16 8 Si 0.92 18.79 29.56 -169.99 -5.03 13.77 16 9 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 12 N -0.33 -10.27 10.48 31.26 0.33 -9.94 16 13 N -0.29 -8.13 11.62 30.89 0.36 -7.77 16 14 C 0.05 1.17 8.09 -87.28 -0.71 0.46 16 15 S -0.04 -0.83 21.64 -107.50 -2.33 -3.15 16 16 C -0.09 -1.42 4.98 37.16 0.19 -1.24 16 17 C 0.09 1.20 3.31 -25.65 -0.08 1.12 16 18 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.15 -1.51 6.60 -24.62 -0.16 -1.67 16 20 C -0.14 -1.27 6.29 -25.40 -0.16 -1.43 16 21 C 0.10 1.04 1.06 -89.76 -0.10 0.94 16 22 C -0.12 -1.13 6.09 -25.29 -0.15 -1.28 16 23 C -0.12 -0.95 6.91 -24.65 -0.17 -1.12 16 24 C -0.12 -0.99 6.84 -24.97 -0.17 -1.16 16 25 C -0.14 -1.29 6.28 -25.81 -0.16 -1.46 16 26 O -0.35 -4.90 10.32 -35.23 -0.36 -5.26 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.39 7.54 -51.93 -0.39 1.00 16 29 H 0.07 1.14 7.84 -51.93 -0.41 0.73 16 30 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 31 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.58 7.11 -51.93 -0.37 0.21 16 36 H 0.08 0.63 7.26 -51.93 -0.38 0.26 16 37 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.07 0.64 7.35 -51.93 -0.38 0.26 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.55 7.09 -51.93 -0.37 0.18 16 44 H 0.08 0.80 7.97 -51.93 -0.41 0.39 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -33.67 366.72 -10.75 -44.42 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.87 Total: 1.63 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.64 Total: -6.03 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.95 Total: -50.90 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.36 Total: -5.26 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -2.33 Total: -3.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.67 -10.75 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530298733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.780 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds