Wall clock time and date at job start Tue Mar 31 2020 13:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38356 * 127.15418 * 2 1 4 4 C 1.39778 * 126.56172 * 0.02562 * 3 2 1 5 5 H 1.07995 * 119.99928 * 0.26417 * 4 3 2 6 6 C 1.40083 * 119.99583 * 180.26720 * 4 3 2 7 7 N 1.30819 * 120.00168 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99562 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47269 * 119.99965 * 8 6 4 11 11 H 1.48509 * 109.46677 * 239.99320 * 8 6 4 12 12 N 1.33098 * 106.86794 * 180.22744 * 3 2 1 13 13 N 1.28511 * 109.74841 * 359.77341 * 12 3 2 14 14 C 1.32384 * 110.20415 * 0.02562 * 13 12 3 15 15 S 1.76206 * 126.25696 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99929 * 0.02562 * 15 14 13 17 17 C 1.52999 * 109.46638 * 179.97438 * 16 15 14 18 18 H 1.08995 * 110.54037 * 303.62349 * 17 16 15 19 19 C 1.55045 * 110.59704 * 180.62272 * 17 16 15 20 20 C 1.54952 * 102.10865 * 204.78617 * 19 17 16 21 21 C 1.53579 * 103.94595 * 20.86913 * 20 19 17 22 22 C 1.53729 * 110.18780 * 122.49418 * 21 20 19 23 23 C 1.55017 * 104.06630 * 96.85066 * 22 21 20 24 24 C 1.54931 * 102.81466 * 37.48722 * 23 22 21 25 25 C 1.53354 * 110.38708 * 240.64989 * 21 20 19 26 26 O 1.43131 * 107.93983 * 1.76105 * 21 20 19 27 27 H 1.09001 * 109.46904 * 270.17377 * 1 2 3 28 28 H 1.09003 * 109.47048 * 30.17355 * 1 2 3 29 29 H 1.08995 * 109.47319 * 150.17217 * 1 2 3 30 30 H 0.96997 * 120.00016 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47216 * 300.00172 * 16 15 14 32 32 H 1.09001 * 109.46620 * 60.00275 * 16 15 14 33 33 H 1.09000 * 110.90394 * 322.99406 * 19 17 16 34 34 H 1.09005 * 110.90345 * 86.58591 * 19 17 16 35 35 H 1.08993 * 110.53169 * 262.25313 * 20 19 17 36 36 H 1.08996 * 110.65188 * 139.54091 * 20 19 17 37 37 H 1.09001 * 110.51212 * 215.48977 * 22 21 20 38 38 H 1.08992 * 110.51236 * 338.20263 * 22 21 20 39 39 H 1.09004 * 110.74167 * 279.16029 * 23 22 21 40 40 H 1.08996 * 110.90604 * 155.89770 * 23 22 21 41 41 H 1.09006 * 110.48705 * 203.67578 * 24 23 22 42 42 H 1.09001 * 110.59514 * 81.09584 * 24 23 22 43 43 H 1.08998 * 110.06768 * 359.09285 * 25 21 20 44 44 H 1.08995 * 110.07078 * 120.57509 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7005 0.0053 6 6 2.8768 3.4568 -0.0052 7 7 4.1477 3.1466 -0.0105 8 14 2.3530 5.2499 -0.0038 9 1 0.8704 5.3325 0.0031 10 1 2.8924 5.9223 1.2054 11 1 2.8802 5.9204 -1.2196 12 7 3.5490 0.6413 -0.0051 13 7 3.5370 -0.6438 -0.0033 14 6 2.2904 -1.0893 0.0024 15 16 1.7873 -2.7780 0.0060 16 6 3.4058 -3.5882 0.0007 17 6 3.2161 -5.1064 0.0036 18 1 2.6113 -5.4146 0.8564 19 6 4.5886 -5.8275 0.0149 20 6 4.2408 -7.1981 -0.6188 21 6 2.9366 -6.9315 -1.3847 22 6 3.1124 -7.2841 -2.8706 23 6 2.5368 -8.7186 -2.9881 24 6 1.3250 -8.6828 -2.0234 25 6 1.8075 -7.8152 -0.8407 26 8 2.6120 -5.5457 -1.2336 27 1 -0.3633 0.0031 1.0277 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3634 -0.8915 -0.5111 30 1 4.8180 3.8476 -0.0141 31 1 3.9574 -3.2922 -0.8917 32 1 3.9640 -3.2904 0.8883 33 1 5.3152 -5.2903 -0.5946 34 1 4.9542 -5.9519 1.0342 35 1 4.0828 -7.9484 0.1558 36 1 5.0276 -7.5161 -1.3028 37 1 2.5472 -6.5935 -3.4965 38 1 4.1675 -7.2723 -3.1437 39 1 3.2693 -9.4565 -2.6606 40 1 2.2124 -8.9252 -4.0080 41 1 1.0785 -9.6886 -1.6830 42 1 0.4633 -8.2229 -2.5072 43 1 2.1833 -8.4511 -0.0392 44 1 0.9905 -7.1943 -0.4734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530298733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:33 Heat of formation + Delta-G solvation = -11.823161 kcal Electronic energy + Delta-G solvation = -24754.220446 eV Core-core repulsion = 21218.233033 eV Total energy + Delta-G solvation = -3535.987413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.46209 -41.28520 -37.36617 -35.63492 -35.17015 -33.35070 -32.06803 -31.29136 -29.71995 -28.37056 -27.85121 -27.32827 -24.14897 -22.89460 -22.69093 -22.14943 -21.23874 -20.59179 -19.27077 -18.02211 -17.72186 -17.23101 -16.88669 -16.58106 -16.21968 -16.15580 -15.46271 -15.35555 -14.94286 -14.75569 -14.31137 -14.20626 -13.91434 -13.89579 -13.82299 -13.19983 -13.03605 -12.96665 -12.79720 -12.68249 -12.57060 -12.15798 -12.01920 -11.96291 -11.91870 -11.82505 -11.69052 -11.53942 -11.47460 -11.34504 -11.25730 -10.58863 -10.53516 -10.36706 -10.28333 -8.55361 -8.51824 -6.59348 0.45744 1.18066 1.28198 1.41051 1.59410 1.60199 2.17955 2.43524 2.49770 2.74445 3.32877 3.45704 3.60809 3.71636 3.83359 3.95155 4.03585 4.06098 4.19492 4.27992 4.35510 4.43233 4.48625 4.56287 4.59411 4.64817 4.76560 4.82749 4.87373 4.88124 4.93991 4.95116 4.98244 5.06512 5.09557 5.15284 5.21565 5.23254 5.31244 5.40657 5.48120 5.55712 6.01937 6.12884 6.21205 6.74763 6.91291 8.40688 8.62969 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030657 B = 0.002509 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.100562 B =11157.059482 C =11533.910034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.522 5.522 3 C 0.315 3.685 4 C -0.470 4.470 5 H 0.103 0.897 6 C 0.027 3.973 7 N -0.789 5.789 8 Si 1.009 2.991 9 H -0.245 1.245 10 H -0.266 1.266 11 H -0.267 1.267 12 N -0.389 5.389 13 N -0.332 5.332 14 C 0.054 3.946 15 S -0.005 6.005 16 C -0.082 4.082 17 C 0.096 3.904 18 H 0.089 0.911 19 C -0.142 4.142 20 C -0.134 4.134 21 C 0.087 3.913 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.138 4.138 26 O -0.378 6.378 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.284 0.716 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.087 0.913 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 -21.589 -1.193 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.224 5.224 3 C 0.069 3.931 4 C -0.511 4.511 5 H 0.121 0.879 6 C -0.193 4.193 7 N -0.414 5.414 8 Si 0.827 3.173 9 H -0.168 1.168 10 H -0.191 1.191 11 H -0.192 1.192 12 N -0.235 5.235 13 N -0.176 5.176 14 C -0.320 4.320 15 S 0.222 5.778 16 C -0.232 4.232 17 C 0.037 3.963 18 H 0.107 0.893 19 C -0.182 4.182 20 C -0.172 4.172 21 C 0.048 3.952 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.176 4.176 26 O -0.298 6.298 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.610 -21.914 -1.344 22.434 hybrid contribution 0.013 1.752 0.052 1.753 sum -4.597 -20.162 -1.291 20.720 Atomic orbital electron populations 1.21842 0.75322 1.04364 1.03361 1.46385 1.08100 1.04453 1.63437 1.22085 0.85127 0.89964 0.95944 1.18652 0.95994 0.86391 1.50020 0.87878 1.27025 0.93905 1.06597 0.91812 1.70170 1.02432 1.36960 1.31845 0.84782 0.80136 0.73650 0.78720 1.16791 1.19116 1.19205 1.75296 1.17374 0.99157 1.31705 1.74391 1.17195 1.07119 1.18939 1.26510 0.91084 0.95678 1.18711 1.84380 1.11824 0.86823 1.94771 1.23445 0.96779 0.96751 1.06177 1.22901 0.95150 0.89677 0.88555 0.89339 1.23199 0.95603 0.95846 1.03503 1.23107 0.96532 0.97154 1.00379 1.22631 0.94756 0.81264 0.96563 1.22503 1.01732 0.97669 0.93944 1.22475 0.97539 0.95294 1.00067 1.22352 0.97874 1.00067 0.95657 1.22677 0.97861 0.97987 0.99025 1.88965 1.75132 1.25457 1.40280 0.90653 0.89249 0.89361 0.90528 0.90640 0.88314 0.90894 0.87927 0.88421 0.89104 0.92496 0.90447 0.89815 0.90689 0.89968 0.92435 0.89486 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.46 10.87 127.77 1.39 4.85 16 2 N -0.52 -26.39 3.26 -543.61 -1.77 -28.16 16 3 C 0.32 18.63 7.53 133.23 1.00 19.63 16 4 C -0.47 -25.78 9.04 23.09 0.21 -25.57 16 5 H 0.10 5.01 7.31 -2.91 -0.02 4.99 16 6 C 0.03 1.42 5.50 85.29 0.47 1.89 16 7 N -0.79 -45.63 11.94 21.86 0.26 -45.37 16 8 Si 1.01 38.44 29.56 68.60 2.03 40.46 16 9 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 10 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 11 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 12 N -0.39 -25.08 10.48 -55.01 -0.58 -25.66 16 13 N -0.33 -19.53 11.62 -56.17 -0.65 -20.18 16 14 C 0.05 2.74 8.09 179.18 1.45 4.19 16 15 S -0.01 -0.20 21.64 -56.49 -1.22 -1.42 16 16 C -0.08 -2.76 4.98 71.98 0.36 -2.40 16 17 C 0.10 2.42 3.31 31.29 0.10 2.53 16 18 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 19 C -0.14 -2.72 6.60 31.96 0.21 -2.51 16 20 C -0.13 -2.04 6.29 31.46 0.20 -1.84 16 21 C 0.09 1.70 1.06 -10.24 -0.01 1.69 16 22 C -0.12 -2.20 6.09 31.53 0.19 -2.01 16 23 C -0.12 -1.52 6.91 31.94 0.22 -1.29 16 24 C -0.12 -1.70 6.84 31.73 0.22 -1.49 16 25 C -0.14 -2.28 6.28 31.19 0.20 -2.08 16 26 O -0.38 -10.45 10.32 -148.98 -1.54 -11.98 16 27 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.09 3.07 7.54 -2.39 -0.02 3.05 16 29 H 0.09 2.84 7.84 -2.39 -0.02 2.83 16 30 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16 31 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 34 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.10 1.09 7.11 -2.39 -0.02 1.07 16 36 H 0.09 1.19 7.26 -2.39 -0.02 1.17 16 37 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 38 H 0.08 1.28 7.35 -2.39 -0.02 1.26 16 39 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 1.10 7.09 -2.39 -0.02 1.08 16 44 H 0.06 1.17 7.97 -2.39 -0.02 1.15 16 Total: -1.00 -77.55 366.72 3.73 -73.83 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.99 Total: 22.90 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 6.21 Total: -4.41 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -2.74 Total: -119.37 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.54 Total: -11.98 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.22 Total: -1.42 kcal Total: -77.55 3.73 -73.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530298733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.004 kcal (2) G-P(sol) polarization free energy of solvation -77.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds