Wall clock time and date at job start Tue Mar 31 2020 14:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99971 * 2 1 4 4 O 1.20823 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00053 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47091 * 180.02562 * 5 3 2 7 7 C 1.37100 * 119.99670 * 264.02866 * 6 5 3 8 8 H 1.08000 * 119.99780 * 198.37997 * 7 6 5 9 9 C 1.38942 * 120.00237 * 18.37700 * 7 6 5 10 10 N 1.31413 * 120.00063 * 21.13979 * 9 7 6 11 11 Si 1.86799 * 120.00348 * 201.14138 * 9 7 6 12 12 H 1.48507 * 109.46768 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47585 * 119.99539 * 11 9 7 14 14 H 1.48502 * 109.47392 * 240.00402 * 11 9 7 15 15 C 1.34770 * 120.00013 * 84.02858 * 6 5 3 16 16 O 1.21294 * 120.00297 * 0.02562 * 15 6 5 17 17 C 1.50697 * 119.99905 * 179.97438 * 15 6 5 18 18 C 1.53003 * 109.47197 * 180.02562 * 17 15 6 19 19 H 1.09004 * 109.47100 * 304.99985 * 18 17 15 20 20 C 1.52997 * 109.47515 * 64.99952 * 18 17 15 21 21 C 1.50696 * 109.47169 * 185.00177 * 18 17 15 22 22 C 1.39868 * 126.04050 * 305.40244 * 21 18 17 23 23 C 1.50704 * 125.89947 * 359.97438 * 22 21 18 24 24 N 1.30839 * 108.20676 * 180.02562 * 22 21 18 25 25 N 1.40086 * 108.20330 * 359.77359 * 24 22 21 26 26 H 0.96999 * 126.03835 * 180.23477 * 25 24 22 27 27 C 1.34951 * 107.92284 * 0.37270 * 25 24 22 28 28 C 1.50700 * 126.12693 * 179.90614 * 27 25 24 29 29 H 1.08996 * 109.47311 * 300.00264 * 1 2 3 30 30 H 1.08999 * 109.47306 * 60.00469 * 1 2 3 31 31 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47113 * 59.99492 * 5 3 2 33 33 H 1.08998 * 109.47138 * 299.99919 * 5 3 2 34 34 H 0.97006 * 120.00166 * 180.02562 * 10 9 7 35 35 H 1.08992 * 109.47159 * 60.00304 * 17 15 6 36 36 H 1.08997 * 109.47232 * 300.00184 * 17 15 6 37 37 H 1.08997 * 109.47648 * 173.40816 * 20 18 17 38 38 H 1.09000 * 109.46824 * 293.40845 * 20 18 17 39 39 H 1.09002 * 109.47242 * 53.40132 * 20 18 17 40 40 H 1.08994 * 109.47078 * 94.85136 * 23 22 21 41 41 H 1.09003 * 109.47330 * 214.85578 * 23 22 21 42 42 H 1.08998 * 109.46929 * 334.85078 * 23 22 21 43 43 H 1.09004 * 109.47370 * 269.68618 * 28 27 25 44 44 H 1.09002 * 109.47295 * 149.68410 * 28 27 25 45 45 H 1.09001 * 109.47475 * 29.68045 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2939 3.3028 -1.1805 8 1 4.8721 4.2150 -1.1732 9 6 3.8667 2.7607 -2.3864 10 7 2.8508 1.9274 -2.4089 11 14 4.7363 3.2164 -3.9756 12 1 5.8398 4.1656 -3.6813 13 1 5.2913 1.9913 -4.6051 14 1 3.7689 3.8552 -4.9037 15 6 4.0567 3.3597 1.1614 16 8 3.7809 2.8083 2.2060 17 6 4.4846 4.8046 1.1622 18 6 4.4864 5.3352 2.5972 19 1 3.5066 5.1718 3.0463 20 6 5.5504 4.5977 3.4124 21 6 4.7944 6.8103 2.5870 22 6 5.9092 7.4141 1.9963 23 6 7.0131 6.7012 1.2585 24 7 5.8287 8.7047 2.1956 25 7 4.6556 8.9639 2.9162 26 1 4.3414 9.8366 3.2001 27 6 4.0417 7.7848 3.1482 28 6 2.7463 7.5889 3.8930 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 2.5528 1.5486 -3.2508 35 1 3.7901 5.3895 0.5591 36 1 5.4876 4.8868 0.7435 37 1 5.6331 5.0535 4.3990 38 1 5.2659 3.5509 3.5186 39 1 6.5105 4.6630 2.9004 40 1 6.7989 6.7075 0.1898 41 1 7.9599 7.2090 1.4424 42 1 7.0788 5.6715 1.6099 43 1 2.9554 7.4381 4.9522 44 1 2.2279 6.7157 3.4971 45 1 2.1187 8.4714 3.7688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534589282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:44 Heat of formation + Delta-G solvation = -49.219173 kcal Electronic energy + Delta-G solvation = -28757.144960 eV Core-core repulsion = 24776.783063 eV Total energy + Delta-G solvation = -3980.361897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24313 -39.43008 -38.36798 -35.69175 -34.78363 -34.34516 -33.14582 -31.54890 -30.36477 -28.90857 -27.87986 -27.08182 -26.59571 -25.92275 -24.48567 -22.01502 -20.22052 -19.96625 -19.14007 -18.80596 -17.07479 -16.63224 -16.53655 -16.10180 -15.43055 -15.18627 -15.02686 -14.68629 -14.37300 -14.10768 -13.72509 -13.51687 -13.23599 -12.96813 -12.77860 -12.54118 -12.42474 -12.38252 -12.25696 -12.02705 -11.96640 -11.74490 -11.40022 -11.27247 -11.24739 -10.93803 -10.79927 -10.68628 -10.44817 -10.39626 -10.28086 -9.80090 -9.77307 -9.49624 -9.04104 -8.98607 -8.45133 -8.08024 -7.89607 -6.48161 -3.96799 2.02098 2.94268 3.00557 3.08640 3.20474 3.24017 3.53943 3.74102 4.05969 4.12311 4.67033 4.79139 4.92938 5.02953 5.12916 5.44390 5.48021 5.51553 5.65210 5.71886 5.79946 5.81244 5.87802 5.89012 5.97621 5.98516 6.08247 6.16403 6.24124 6.30893 6.32236 6.37901 6.47679 6.58572 6.64996 6.75035 6.82703 6.95328 7.07474 7.38676 7.44830 7.50873 7.65640 7.88971 8.27006 9.01388 9.16080 9.42021 9.83212 10.59624 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.004435 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.198620 B = 6312.201524 C = 7619.596777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.377 6.377 3 C 0.484 3.516 4 O -0.498 6.498 5 C 0.158 3.842 6 N -0.432 5.432 7 C -0.333 4.333 8 H 0.104 0.896 9 C 0.037 3.963 10 N -0.868 5.868 11 Si 0.921 3.079 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.283 1.283 15 C 0.474 3.526 16 O -0.600 6.600 17 C -0.111 4.111 18 C 0.004 3.996 19 H 0.077 0.923 20 C -0.144 4.144 21 C -0.214 4.214 22 C 0.091 3.909 23 C -0.083 4.083 24 N -0.304 5.304 25 N -0.483 5.483 26 H 0.433 0.567 27 C 0.082 3.918 28 C -0.093 4.093 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.271 0.729 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 4.773 6.846 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.295 6.295 3 C 0.325 3.675 4 O -0.382 6.382 5 C 0.032 3.968 6 N -0.151 5.151 7 C -0.460 4.460 8 H 0.122 0.878 9 C -0.168 4.168 10 N -0.506 5.506 11 Si 0.747 3.253 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.209 1.209 15 C 0.264 3.736 16 O -0.486 6.486 17 C -0.151 4.151 18 C -0.016 4.016 19 H 0.096 0.904 20 C -0.201 4.201 21 C -0.225 4.225 22 C -0.076 4.076 23 C -0.141 4.141 24 N -0.128 5.128 25 N -0.192 5.192 26 H 0.276 0.724 27 C -0.046 4.046 28 C -0.152 4.152 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.013 5.818 6.987 9.312 hybrid contribution -0.719 0.165 -0.956 1.207 sum 1.294 5.984 6.031 8.594 Atomic orbital electron populations 1.22913 0.78833 1.01711 1.01588 1.86456 1.21598 1.35657 1.85784 1.23980 0.92320 0.80525 0.70665 1.90506 1.66460 1.36344 1.44879 1.20410 0.87157 0.85976 1.03297 1.43429 1.57457 1.07890 1.06309 1.19654 1.33086 1.10964 0.82290 0.87794 1.25209 0.94742 0.97214 0.99618 1.69853 1.21412 1.31600 1.27759 0.85963 0.79423 0.78519 0.81346 1.19091 1.20486 1.20943 1.20266 0.81468 0.88379 0.83469 1.90487 1.55607 1.70602 1.31937 1.21486 1.02875 0.94049 0.96687 1.19186 0.99963 0.87019 0.95417 0.90442 1.21938 0.97739 1.02131 0.98261 1.19889 0.97553 0.96582 1.08427 1.22176 0.96773 0.90705 0.97941 1.20430 0.94191 0.99877 0.99644 1.77204 1.02459 1.16601 1.16549 1.46059 1.19034 1.07707 1.46382 0.72389 1.20849 0.96787 0.86313 1.00640 1.20470 0.91479 1.03630 0.99571 0.93206 0.92668 0.89699 0.86393 0.90049 0.91885 0.89936 0.89854 0.94086 0.90101 0.93402 0.90139 0.91306 0.89534 0.90363 0.89101 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.15 10.56 -39.25 -0.41 -8.56 16 3 C 0.48 11.94 6.10 36.01 0.22 12.16 16 4 O -0.50 -13.77 15.67 -18.75 -0.29 -14.06 16 5 C 0.16 3.72 5.14 -5.19 -0.03 3.69 16 6 N -0.43 -10.53 2.18 -116.10 -0.25 -10.78 16 7 C -0.33 -8.13 9.11 -14.93 -0.14 -8.26 16 8 H 0.10 2.39 6.58 -52.49 -0.35 2.05 16 9 C 0.04 0.90 4.87 -17.47 -0.09 0.82 16 10 N -0.87 -22.34 9.24 55.50 0.51 -21.83 16 11 Si 0.92 19.05 29.60 -169.99 -5.03 14.01 16 12 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 C 0.47 10.99 7.17 -10.99 -0.08 10.92 16 16 O -0.60 -14.75 13.66 5.55 0.08 -14.67 16 17 C -0.11 -2.16 3.34 -27.88 -0.09 -2.25 16 18 C 0.00 0.07 2.14 -91.77 -0.20 -0.13 16 19 H 0.08 1.41 6.57 -51.93 -0.34 1.07 16 20 C -0.14 -2.33 8.70 37.16 0.32 -2.00 16 21 C -0.21 -3.37 4.80 -105.06 -0.50 -3.87 16 22 C 0.09 1.42 7.05 -82.40 -0.58 0.83 16 23 C -0.08 -1.11 8.88 36.01 0.32 -0.79 16 24 N -0.30 -4.77 12.70 33.67 0.43 -4.34 16 25 N -0.48 -6.31 7.36 33.48 0.25 -6.06 16 26 H 0.43 4.09 8.96 -182.61 -1.64 2.46 16 27 C 0.08 1.12 7.21 -82.26 -0.59 0.53 16 28 C -0.09 -0.99 10.10 36.01 0.36 -0.62 16 29 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.12 2.77 6.49 -51.93 -0.34 2.43 16 33 H 0.08 1.78 7.61 -51.93 -0.39 1.39 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.08 1.71 8.10 -51.93 -0.42 1.29 16 36 H 0.08 1.49 5.24 -51.93 -0.27 1.22 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.49 6.10 -51.93 -0.32 1.17 16 39 H 0.05 0.71 5.74 -51.93 -0.30 0.42 16 40 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.13 4.51 -51.93 -0.23 0.90 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.07 7.07 -51.93 -0.37 0.70 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -32.36 363.82 -6.73 -39.09 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.48 Total: 8.88 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 0.00 Total: 12.86 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.93 Total: -43.02 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.63 Total: -37.30 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.36 -6.73 -39.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534589282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.133 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds