Wall clock time and date at job start Tue Mar 31 2020 14:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99971 * 2 1 4 4 O 1.20823 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00053 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47091 * 180.02562 * 5 3 2 7 7 C 1.37100 * 119.99670 * 264.02866 * 6 5 3 8 8 H 1.08000 * 119.99780 * 198.37997 * 7 6 5 9 9 C 1.38942 * 120.00237 * 18.37700 * 7 6 5 10 10 N 1.31413 * 120.00063 * 21.13979 * 9 7 6 11 11 Si 1.86799 * 120.00348 * 201.14138 * 9 7 6 12 12 H 1.48507 * 109.46768 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47585 * 119.99539 * 11 9 7 14 14 H 1.48502 * 109.47392 * 240.00402 * 11 9 7 15 15 C 1.34770 * 120.00013 * 84.02858 * 6 5 3 16 16 O 1.21294 * 120.00297 * 0.02562 * 15 6 5 17 17 C 1.50697 * 119.99905 * 179.97438 * 15 6 5 18 18 C 1.53003 * 109.47197 * 180.02562 * 17 15 6 19 19 H 1.09004 * 109.47100 * 304.99985 * 18 17 15 20 20 C 1.52997 * 109.47515 * 64.99952 * 18 17 15 21 21 C 1.50696 * 109.47169 * 185.00177 * 18 17 15 22 22 C 1.39868 * 126.04050 * 305.40244 * 21 18 17 23 23 C 1.50704 * 125.89947 * 359.97438 * 22 21 18 24 24 N 1.30839 * 108.20676 * 180.02562 * 22 21 18 25 25 N 1.40086 * 108.20330 * 359.77359 * 24 22 21 26 26 H 0.96999 * 126.03835 * 180.23477 * 25 24 22 27 27 C 1.34951 * 107.92284 * 0.37270 * 25 24 22 28 28 C 1.50700 * 126.12693 * 179.90614 * 27 25 24 29 29 H 1.08996 * 109.47311 * 300.00264 * 1 2 3 30 30 H 1.08999 * 109.47306 * 60.00469 * 1 2 3 31 31 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47113 * 59.99492 * 5 3 2 33 33 H 1.08998 * 109.47138 * 299.99919 * 5 3 2 34 34 H 0.97006 * 120.00166 * 180.02562 * 10 9 7 35 35 H 1.08992 * 109.47159 * 60.00304 * 17 15 6 36 36 H 1.08997 * 109.47232 * 300.00184 * 17 15 6 37 37 H 1.08997 * 109.47648 * 173.40816 * 20 18 17 38 38 H 1.09000 * 109.46824 * 293.40845 * 20 18 17 39 39 H 1.09002 * 109.47242 * 53.40132 * 20 18 17 40 40 H 1.08994 * 109.47078 * 94.85136 * 23 22 21 41 41 H 1.09003 * 109.47330 * 214.85578 * 23 22 21 42 42 H 1.08998 * 109.46929 * 334.85078 * 23 22 21 43 43 H 1.09004 * 109.47370 * 269.68618 * 28 27 25 44 44 H 1.09002 * 109.47295 * 149.68410 * 28 27 25 45 45 H 1.09001 * 109.47475 * 29.68045 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2939 3.3028 -1.1805 8 1 4.8721 4.2150 -1.1732 9 6 3.8667 2.7607 -2.3864 10 7 2.8508 1.9274 -2.4089 11 14 4.7363 3.2164 -3.9756 12 1 5.8398 4.1656 -3.6813 13 1 5.2913 1.9913 -4.6051 14 1 3.7689 3.8552 -4.9037 15 6 4.0567 3.3597 1.1614 16 8 3.7809 2.8083 2.2060 17 6 4.4846 4.8046 1.1622 18 6 4.4864 5.3352 2.5972 19 1 3.5066 5.1718 3.0463 20 6 5.5504 4.5977 3.4124 21 6 4.7944 6.8103 2.5870 22 6 5.9092 7.4141 1.9963 23 6 7.0131 6.7012 1.2585 24 7 5.8287 8.7047 2.1956 25 7 4.6556 8.9639 2.9162 26 1 4.3414 9.8366 3.2001 27 6 4.0417 7.7848 3.1482 28 6 2.7463 7.5889 3.8930 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 2.5528 1.5486 -3.2508 35 1 3.7901 5.3895 0.5591 36 1 5.4876 4.8868 0.7435 37 1 5.6331 5.0535 4.3990 38 1 5.2659 3.5509 3.5186 39 1 6.5105 4.6630 2.9004 40 1 6.7989 6.7075 0.1898 41 1 7.9599 7.2090 1.4424 42 1 7.0788 5.6715 1.6099 43 1 2.9554 7.4381 4.9522 44 1 2.2279 6.7157 3.4971 45 1 2.1187 8.4714 3.7688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534589282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:43 Heat of formation + Delta-G solvation = -68.715415 kcal Electronic energy + Delta-G solvation = -28757.990381 eV Core-core repulsion = 24776.783063 eV Total energy + Delta-G solvation = -3981.207318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.37333 -41.27570 -40.15183 -37.41690 -36.56364 -35.95326 -34.20700 -33.43199 -31.56925 -30.54648 -29.01213 -28.55343 -27.66067 -27.57708 -26.27597 -23.40313 -21.97372 -21.06709 -20.94617 -20.03077 -18.75082 -18.40281 -18.05640 -17.68322 -17.23255 -16.90903 -16.25375 -16.13446 -16.06621 -15.84232 -15.22427 -14.65543 -14.47880 -14.24764 -14.16954 -14.04105 -13.91892 -13.65129 -13.54066 -13.35947 -13.20814 -13.06270 -13.01216 -12.83857 -12.77408 -12.55097 -12.40707 -12.21227 -12.02068 -11.88279 -11.73253 -11.53529 -11.40299 -11.08811 -10.88585 -10.26615 -10.12536 -9.78555 -9.24549 -8.33571 -5.87873 0.92647 1.43335 1.51913 1.64045 1.73773 1.78692 1.87412 2.01897 2.31077 2.38629 2.96195 3.18257 3.76739 3.80049 4.05208 4.21344 4.29164 4.35272 4.36973 4.39258 4.43235 4.50564 4.55415 4.68798 4.68966 4.72191 4.73612 4.81674 4.85322 4.87620 4.95742 5.00777 5.13744 5.18057 5.24336 5.35336 5.50784 5.54044 5.58054 5.69383 5.79078 5.88362 6.39248 6.49448 6.79111 7.13672 7.27858 7.57553 7.98597 8.74193 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.004435 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.198620 B = 6312.201524 C = 7619.596777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.486 3.514 4 O -0.536 6.536 5 C 0.155 3.845 6 N -0.444 5.444 7 C -0.347 4.347 8 H 0.115 0.885 9 C -0.004 4.004 10 N -0.897 5.897 11 Si 0.988 3.012 12 H -0.253 1.253 13 H -0.275 1.275 14 H -0.293 1.293 15 C 0.465 3.535 16 O -0.619 6.619 17 C -0.100 4.100 18 C 0.016 3.984 19 H 0.061 0.939 20 C -0.136 4.136 21 C -0.243 4.243 22 C 0.082 3.918 23 C -0.084 4.084 24 N -0.327 5.327 25 N -0.471 5.471 26 H 0.449 0.551 27 C 0.092 3.908 28 C -0.092 4.092 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.269 0.731 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 5.658 6.996 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.328 3.672 4 O -0.424 6.424 5 C 0.028 3.972 6 N -0.163 5.163 7 C -0.473 4.473 8 H 0.132 0.868 9 C -0.206 4.206 10 N -0.536 5.536 11 Si 0.812 3.188 12 H -0.176 1.176 13 H -0.200 1.200 14 H -0.219 1.219 15 C 0.256 3.744 16 O -0.506 6.506 17 C -0.140 4.140 18 C -0.004 4.004 19 H 0.080 0.920 20 C -0.193 4.193 21 C -0.254 4.254 22 C -0.084 4.084 23 C -0.142 4.142 24 N -0.151 5.151 25 N -0.181 5.181 26 H 0.295 0.705 27 C -0.037 4.037 28 C -0.151 4.151 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.579 6.707 7.152 10.138 hybrid contribution -1.009 -0.139 -0.933 1.381 sum 1.570 6.568 6.219 9.180 Atomic orbital electron populations 1.23268 0.76344 1.04765 1.01106 1.86424 1.24015 1.33991 1.85117 1.24147 0.92727 0.80710 0.69573 1.90474 1.67340 1.37684 1.46886 1.20472 0.86923 0.86196 1.03560 1.43664 1.57666 1.08245 1.06750 1.20017 1.33248 1.11531 0.82552 0.86774 1.26039 0.94980 0.97152 1.02430 1.69961 1.22600 1.32791 1.28252 0.84952 0.78317 0.78433 0.77110 1.17592 1.20041 1.21938 1.20943 0.80865 0.89669 0.82939 1.90465 1.56273 1.71377 1.32484 1.21442 1.02957 0.91222 0.98337 1.18982 0.99454 0.88307 0.93656 0.92028 1.21840 0.97940 1.00440 0.99101 1.19817 0.98837 0.95977 1.10744 1.22461 0.97152 0.90829 0.97983 1.20481 0.94436 0.99854 0.99441 1.77153 1.03728 1.16647 1.17576 1.46073 1.18240 1.08398 1.45422 0.70487 1.21244 0.97108 0.86019 0.99372 1.20570 0.90208 1.04230 1.00049 0.93110 0.93780 0.84865 0.86606 0.89011 0.92102 0.91494 0.88343 0.92678 0.92585 0.92210 0.90043 0.89768 0.89527 0.88507 0.90571 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.52 16 2 O -0.38 -16.30 10.56 -51.40 -0.54 -16.84 16 3 C 0.49 24.35 6.10 71.24 0.43 24.79 16 4 O -0.54 -30.38 15.67 21.97 0.34 -30.03 16 5 C 0.15 7.41 5.14 85.63 0.44 7.85 16 6 N -0.44 -21.97 2.18 -639.60 -1.39 -23.36 16 7 C -0.35 -16.97 9.11 84.04 0.77 -16.20 16 8 H 0.11 5.20 6.58 -2.91 -0.02 5.18 16 9 C 0.00 -0.22 4.87 84.92 0.41 0.20 16 10 N -0.90 -46.65 9.24 21.66 0.20 -46.45 16 11 Si 0.99 38.74 29.60 68.60 2.03 40.77 16 12 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 13 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 14 H -0.29 -11.87 7.11 99.48 0.71 -11.17 16 15 C 0.46 21.91 7.17 87.66 0.63 22.53 16 16 O -0.62 -31.04 13.66 -3.07 -0.04 -31.08 16 17 C -0.10 -3.90 3.34 29.85 0.10 -3.80 16 18 C 0.02 0.55 2.14 -11.54 -0.02 0.52 16 19 H 0.06 2.27 6.57 -2.38 -0.02 2.26 16 20 C -0.14 -4.35 8.70 71.98 0.63 -3.72 16 21 C -0.24 -7.41 4.80 -20.15 -0.10 -7.51 16 22 C 0.08 2.45 7.05 43.10 0.30 2.75 16 23 C -0.08 -2.13 8.88 71.24 0.63 -1.50 16 24 N -0.33 -9.72 12.70 -47.38 -0.60 -10.32 16 25 N -0.47 -11.34 7.36 -48.00 -0.35 -11.70 16 26 H 0.45 7.39 8.96 -213.33 -1.91 5.48 16 27 C 0.09 2.36 7.21 41.40 0.30 2.66 16 28 C -0.09 -1.78 10.10 71.24 0.72 -1.06 16 29 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 30 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.13 3.19 8.14 -2.38 -0.02 3.17 16 32 H 0.12 5.54 6.49 -2.39 -0.02 5.53 16 33 H 0.09 4.10 7.61 -2.39 -0.02 4.09 16 34 H 0.27 13.42 8.31 -92.70 -0.77 12.65 16 35 H 0.07 2.82 8.10 -2.39 -0.02 2.80 16 36 H 0.10 3.50 5.24 -2.39 -0.01 3.48 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 2.07 6.10 -2.39 -0.01 2.05 16 39 H 0.06 1.73 5.74 -2.39 -0.01 1.72 16 40 H 0.08 2.03 8.13 -2.39 -0.02 2.01 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.09 2.16 4.51 -2.39 -0.01 2.14 16 43 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.08 1.74 7.07 -2.39 -0.02 1.72 16 45 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -69.99 363.82 5.21 -64.78 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.87 Total: 34.20 kcal Atomic # 6 Polarization: 23.60 SS G_CDS: 6.44 Total: 30.04 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -2.15 Total: -91.83 kcal Atomic # 8 Polarization: -77.72 SS G_CDS: -0.24 Total: -77.96 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -69.99 5.21 -64.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534589282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.934 kcal (2) G-P(sol) polarization free energy of solvation -69.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds