Wall clock time and date at job start Tue Mar 31 2020 14:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00069 * 2 1 4 4 O 1.20827 * 119.99631 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99963 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46706 * 179.97438 * 5 3 2 7 7 C 1.37099 * 120.00028 * 269.99783 * 6 5 3 8 8 H 1.07997 * 120.00349 * 144.23197 * 7 6 5 9 9 C 1.38954 * 119.99738 * 324.23150 * 7 6 5 10 10 N 1.31408 * 119.99795 * 157.96076 * 9 7 6 11 11 Si 1.86798 * 120.00090 * 337.96106 * 9 7 6 12 12 H 1.48497 * 109.47513 * 92.93535 * 11 9 7 13 13 H 1.48508 * 109.46904 * 212.93719 * 11 9 7 14 14 H 1.48504 * 109.47198 * 332.93162 * 11 9 7 15 15 C 1.34780 * 120.00114 * 90.00498 * 6 5 3 16 16 O 1.21290 * 119.99825 * 5.10070 * 15 6 5 17 17 C 1.50704 * 119.99898 * 185.10871 * 15 6 5 18 18 C 1.52997 * 109.46689 * 173.59287 * 17 15 6 19 19 H 1.09003 * 109.47266 * 53.44653 * 18 17 15 20 20 C 1.52999 * 109.47410 * 293.43788 * 18 17 15 21 21 C 1.50708 * 109.46852 * 173.43757 * 18 17 15 22 22 C 1.39870 * 126.03388 * 66.65685 * 21 18 17 23 23 C 1.50704 * 125.90204 * 359.97438 * 22 21 18 24 24 N 1.30841 * 108.19923 * 179.81681 * 22 21 18 25 25 N 1.40082 * 108.20434 * 0.44057 * 24 22 21 26 26 H 0.97004 * 126.03680 * 179.74385 * 25 24 22 27 27 C 1.34949 * 107.92374 * 359.71680 * 25 24 22 28 28 C 1.50708 * 126.12471 * 179.97438 * 27 25 24 29 29 H 1.09001 * 109.46871 * 60.00151 * 1 2 3 30 30 H 1.09004 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47196 * 300.00384 * 1 2 3 32 32 H 1.08998 * 109.46755 * 59.99996 * 5 3 2 33 33 H 1.08994 * 109.46830 * 299.99897 * 5 3 2 34 34 H 0.97002 * 119.99822 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.47031 * 53.59215 * 17 15 6 36 36 H 1.09002 * 109.46807 * 293.59264 * 17 15 6 37 37 H 1.09004 * 109.46871 * 60.00209 * 20 18 17 38 38 H 1.08997 * 109.47223 * 180.02562 * 20 18 17 39 39 H 1.08995 * 109.47138 * 300.00226 * 20 18 17 40 40 H 1.08993 * 109.47112 * 84.69111 * 23 22 21 41 41 H 1.09001 * 109.47073 * 204.69676 * 23 22 21 42 42 H 1.08999 * 109.47094 * 324.69288 * 23 22 21 43 43 H 1.08996 * 109.46933 * 270.02770 * 28 27 25 44 44 H 1.09000 * 109.46730 * 30.02604 * 28 27 25 45 45 H 1.08995 * 109.47030 * 150.02440 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6797 -0.0002 7 6 4.1765 3.3363 -1.1878 8 1 3.9152 4.3804 -1.2769 9 6 4.7103 2.6584 -2.2770 10 7 4.5084 3.1092 -3.4947 11 14 5.7149 1.1063 -2.0102 12 1 4.8267 -0.0802 -2.1020 13 1 6.7713 1.0156 -3.0500 14 1 6.3456 1.1498 -0.6664 15 6 4.1723 3.3267 1.1667 16 8 4.0906 2.7228 2.2154 17 6 4.4868 4.8006 1.1684 18 6 4.4973 5.3180 2.6082 19 1 5.1714 4.7073 3.2089 20 6 3.0839 5.2396 3.1888 21 6 4.9682 6.7496 2.6241 22 6 4.2909 7.8447 2.0779 23 6 2.9615 7.7979 1.3697 24 7 5.0093 8.9172 2.2910 25 7 6.1729 8.5365 2.9716 26 1 6.8877 9.1279 3.2550 27 6 6.1236 7.2017 3.1640 28 6 7.1686 6.3645 3.8557 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9563 0.7806 -0.8891 33 1 3.9556 0.7810 0.8908 34 1 4.8807 2.6357 -4.2551 35 1 3.7284 5.3346 0.5959 36 1 5.4651 4.9638 0.7164 37 1 2.7434 4.2042 3.1773 38 1 3.0914 5.6087 4.2144 39 1 2.4101 5.8504 2.5881 40 1 2.1570 7.8402 2.1038 41 1 2.8805 8.6480 0.6924 42 1 2.8854 6.8714 0.8005 43 1 7.8975 6.0160 3.1241 44 1 7.6724 6.9651 4.6130 45 1 6.6915 5.5070 4.3301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534589283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:47 Heat of formation + Delta-G solvation = -42.466115 kcal Electronic energy + Delta-G solvation = -28674.771315 eV Core-core repulsion = 24694.702253 eV Total energy + Delta-G solvation = -3980.069063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25435 -39.99833 -38.76254 -36.05927 -35.19115 -34.49878 -33.15738 -32.03014 -30.44365 -29.23165 -27.90785 -27.38921 -26.57680 -26.10069 -24.74070 -22.09799 -20.77911 -19.96580 -19.09744 -18.80232 -17.42861 -17.15317 -16.73481 -16.53811 -15.81739 -15.46386 -15.22992 -14.95352 -14.70233 -14.27049 -13.64285 -13.42667 -13.26599 -13.22140 -13.09223 -12.78700 -12.68651 -12.53400 -12.45960 -12.23931 -12.14692 -11.93326 -11.84379 -11.57574 -11.47884 -11.06978 -10.90853 -10.66911 -10.46973 -10.40749 -10.32669 -10.09751 -9.88079 -9.82313 -9.26787 -9.03767 -8.68192 -8.09915 -7.98969 -6.54429 -4.13129 2.01842 2.86189 2.92353 2.94713 2.99889 3.03615 3.17321 3.20429 3.76806 4.01656 4.29801 4.77314 4.85901 4.92505 5.09691 5.37325 5.40884 5.45315 5.46176 5.48446 5.52270 5.62800 5.68845 5.76744 5.79913 5.84488 5.85932 5.87754 5.98135 6.06268 6.18205 6.22393 6.27959 6.46554 6.55084 6.65308 6.79038 6.86266 6.88430 7.02426 7.17403 7.44531 7.89201 7.98078 8.17181 8.40926 8.85625 9.22829 9.54188 10.56371 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.004294 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.669252 B = 6519.472814 C = 7278.133724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.448 3.552 4 O -0.487 6.487 5 C 0.105 3.895 6 N -0.452 5.452 7 C -0.340 4.340 8 H 0.110 0.890 9 C 0.064 3.936 10 N -0.852 5.852 11 Si 0.861 3.139 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.256 1.256 15 C 0.498 3.502 16 O -0.591 6.591 17 C -0.109 4.109 18 C 0.003 3.997 19 H 0.080 0.920 20 C -0.146 4.146 21 C -0.215 4.215 22 C 0.092 3.908 23 C -0.081 4.081 24 N -0.303 5.303 25 N -0.483 5.483 26 H 0.433 0.567 27 C 0.083 3.917 28 C -0.093 4.093 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.276 0.724 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 1.904 9.851 10.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.372 6.372 5 C -0.021 4.021 6 N -0.173 5.173 7 C -0.467 4.467 8 H 0.127 0.873 9 C -0.143 4.143 10 N -0.487 5.487 11 Si 0.688 3.312 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.180 1.180 15 C 0.289 3.711 16 O -0.475 6.475 17 C -0.149 4.149 18 C -0.017 4.017 19 H 0.098 0.902 20 C -0.203 4.203 21 C -0.226 4.226 22 C -0.074 4.074 23 C -0.140 4.140 24 N -0.127 5.127 25 N -0.191 5.191 26 H 0.276 0.724 27 C -0.045 4.045 28 C -0.151 4.151 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.860 3.172 9.972 10.499 hybrid contribution 0.652 -1.214 -0.128 1.384 sum 1.512 1.958 9.843 10.149 Atomic orbital electron populations 1.23129 0.77595 1.02793 1.02249 1.86524 1.22637 1.34611 1.84958 1.24774 0.92843 0.81200 0.72317 1.90610 1.66553 1.36195 1.43847 1.21376 0.86889 0.88797 1.05018 1.43438 1.58770 1.08257 1.06836 1.19104 1.42906 0.98088 0.86559 0.87275 1.25318 0.96208 0.98050 0.94762 1.69770 1.40296 1.40591 0.98005 0.87219 0.81263 0.83065 0.79690 1.19669 1.20849 1.17962 1.20492 0.78028 0.89835 0.82698 1.90521 1.56172 1.69122 1.31704 1.21465 1.03984 0.92626 0.96799 1.19216 0.97610 0.89009 0.95907 0.90195 1.21920 0.95937 1.02954 0.99485 1.19828 0.96346 0.96910 1.09494 1.22183 0.97193 0.90228 0.97813 1.20403 0.90256 1.03872 0.99443 1.77228 0.95411 1.22654 1.17369 1.46060 1.18903 1.06036 1.48149 0.72363 1.20841 0.97733 0.85071 1.00857 1.20470 0.96133 0.98875 0.99652 0.92192 0.88788 0.92341 0.87850 0.86895 0.91350 0.89292 0.89296 0.91044 0.93811 0.92859 0.90541 0.91143 0.89388 0.90077 0.91539 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.87 10.57 -39.26 -0.41 -7.28 16 3 C 0.45 9.78 8.02 36.01 0.29 10.07 16 4 O -0.49 -11.77 16.18 -18.75 -0.30 -12.08 16 5 C 0.10 2.30 4.85 -5.19 -0.03 2.27 16 6 N -0.45 -10.67 1.70 -116.10 -0.20 -10.87 16 7 C -0.34 -8.66 9.20 -14.93 -0.14 -8.79 16 8 H 0.11 2.93 7.00 -52.49 -0.37 2.56 16 9 C 0.06 1.65 5.32 -17.47 -0.09 1.56 16 10 N -0.85 -23.04 13.96 55.50 0.77 -22.26 16 11 Si 0.86 19.12 25.04 -169.99 -4.26 14.86 16 12 H -0.27 -5.70 6.56 56.52 0.37 -5.33 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 15 C 0.50 11.10 7.23 -10.98 -0.08 11.02 16 16 O -0.59 -13.64 13.87 5.55 0.08 -13.57 16 17 C -0.11 -2.09 3.75 -27.88 -0.10 -2.19 16 18 C 0.00 0.04 2.19 -91.77 -0.20 -0.16 16 19 H 0.08 1.34 6.42 -51.93 -0.33 1.00 16 20 C -0.15 -2.40 8.75 37.16 0.33 -2.07 16 21 C -0.21 -3.33 4.81 -105.05 -0.50 -3.83 16 22 C 0.09 1.46 7.06 -82.40 -0.58 0.88 16 23 C -0.08 -1.14 8.63 36.01 0.31 -0.83 16 24 N -0.30 -4.77 12.70 33.67 0.43 -4.34 16 25 N -0.48 -6.21 7.36 33.48 0.25 -5.97 16 26 H 0.43 4.01 8.96 -182.61 -1.64 2.37 16 27 C 0.08 1.10 7.21 -82.26 -0.59 0.51 16 28 C -0.09 -0.92 10.12 36.01 0.36 -0.55 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.10 2.28 2.93 -51.93 -0.15 2.12 16 33 H 0.11 2.30 7.36 -51.93 -0.38 1.91 16 34 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.09 1.73 5.14 -51.93 -0.27 1.46 16 36 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 37 H 0.07 1.35 6.33 -51.93 -0.33 1.02 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.83 5.38 -51.93 -0.28 0.55 16 40 H 0.08 0.96 7.62 -51.93 -0.40 0.56 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.32 5.31 -51.93 -0.28 1.04 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.90 7.05 -51.93 -0.37 0.53 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -31.92 362.74 -5.47 -37.39 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.33 Total: 9.19 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 0.04 Total: 9.45 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 1.25 Total: -43.44 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.64 Total: -32.93 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.26 Total: 14.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.92 -5.47 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534589283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.072 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds