Wall clock time and date at job start Tue Mar 31 2020 14:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00069 * 2 1 4 4 O 1.20827 * 119.99631 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99963 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46706 * 179.97438 * 5 3 2 7 7 C 1.37099 * 120.00028 * 269.99783 * 6 5 3 8 8 H 1.07997 * 120.00349 * 144.23197 * 7 6 5 9 9 C 1.38954 * 119.99738 * 324.23150 * 7 6 5 10 10 N 1.31408 * 119.99795 * 157.96076 * 9 7 6 11 11 Si 1.86798 * 120.00090 * 337.96106 * 9 7 6 12 12 H 1.48497 * 109.47513 * 92.93535 * 11 9 7 13 13 H 1.48508 * 109.46904 * 212.93719 * 11 9 7 14 14 H 1.48504 * 109.47198 * 332.93162 * 11 9 7 15 15 C 1.34780 * 120.00114 * 90.00498 * 6 5 3 16 16 O 1.21290 * 119.99825 * 5.10070 * 15 6 5 17 17 C 1.50704 * 119.99898 * 185.10871 * 15 6 5 18 18 C 1.52997 * 109.46689 * 173.59287 * 17 15 6 19 19 H 1.09003 * 109.47266 * 53.44653 * 18 17 15 20 20 C 1.52999 * 109.47410 * 293.43788 * 18 17 15 21 21 C 1.50708 * 109.46852 * 173.43757 * 18 17 15 22 22 C 1.39870 * 126.03388 * 66.65685 * 21 18 17 23 23 C 1.50704 * 125.90204 * 359.97438 * 22 21 18 24 24 N 1.30841 * 108.19923 * 179.81681 * 22 21 18 25 25 N 1.40082 * 108.20434 * 0.44057 * 24 22 21 26 26 H 0.97004 * 126.03680 * 179.74385 * 25 24 22 27 27 C 1.34949 * 107.92374 * 359.71680 * 25 24 22 28 28 C 1.50708 * 126.12471 * 179.97438 * 27 25 24 29 29 H 1.09001 * 109.46871 * 60.00151 * 1 2 3 30 30 H 1.09004 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47196 * 300.00384 * 1 2 3 32 32 H 1.08998 * 109.46755 * 59.99996 * 5 3 2 33 33 H 1.08994 * 109.46830 * 299.99897 * 5 3 2 34 34 H 0.97002 * 119.99822 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.47031 * 53.59215 * 17 15 6 36 36 H 1.09002 * 109.46807 * 293.59264 * 17 15 6 37 37 H 1.09004 * 109.46871 * 60.00209 * 20 18 17 38 38 H 1.08997 * 109.47223 * 180.02562 * 20 18 17 39 39 H 1.08995 * 109.47138 * 300.00226 * 20 18 17 40 40 H 1.08993 * 109.47112 * 84.69111 * 23 22 21 41 41 H 1.09001 * 109.47073 * 204.69676 * 23 22 21 42 42 H 1.08999 * 109.47094 * 324.69288 * 23 22 21 43 43 H 1.08996 * 109.46933 * 270.02770 * 28 27 25 44 44 H 1.09000 * 109.46730 * 30.02604 * 28 27 25 45 45 H 1.08995 * 109.47030 * 150.02440 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6797 -0.0002 7 6 4.1765 3.3363 -1.1878 8 1 3.9152 4.3804 -1.2769 9 6 4.7103 2.6584 -2.2770 10 7 4.5084 3.1092 -3.4947 11 14 5.7149 1.1063 -2.0102 12 1 4.8267 -0.0802 -2.1020 13 1 6.7713 1.0156 -3.0500 14 1 6.3456 1.1498 -0.6664 15 6 4.1723 3.3267 1.1667 16 8 4.0906 2.7228 2.2154 17 6 4.4868 4.8006 1.1684 18 6 4.4973 5.3180 2.6082 19 1 5.1714 4.7073 3.2089 20 6 3.0839 5.2396 3.1888 21 6 4.9682 6.7496 2.6241 22 6 4.2909 7.8447 2.0779 23 6 2.9615 7.7979 1.3697 24 7 5.0093 8.9172 2.2910 25 7 6.1729 8.5365 2.9716 26 1 6.8877 9.1279 3.2550 27 6 6.1236 7.2017 3.1640 28 6 7.1686 6.3645 3.8557 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9563 0.7806 -0.8891 33 1 3.9556 0.7810 0.8908 34 1 4.8807 2.6357 -4.2551 35 1 3.7284 5.3346 0.5959 36 1 5.4651 4.9638 0.7164 37 1 2.7434 4.2042 3.1773 38 1 3.0914 5.6087 4.2144 39 1 2.4101 5.8504 2.5881 40 1 2.1570 7.8402 2.1038 41 1 2.8805 8.6480 0.6924 42 1 2.8854 6.8714 0.8005 43 1 7.8975 6.0160 3.1241 44 1 7.6724 6.9651 4.6130 45 1 6.6915 5.5070 4.3301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534589283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:46 Heat of formation + Delta-G solvation = -62.625966 kcal Electronic energy + Delta-G solvation = -28675.645512 eV Core-core repulsion = 24694.702253 eV Total energy + Delta-G solvation = -3980.943259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.38905 -41.67237 -40.45670 -37.67088 -36.85378 -36.05424 -34.22377 -33.97437 -31.67106 -30.73877 -29.04326 -28.76168 -27.65120 -27.60712 -26.57355 -23.47114 -22.34700 -21.07769 -20.88682 -20.05227 -19.11274 -18.84964 -18.28188 -17.84814 -17.39847 -17.09233 -16.94795 -16.23470 -16.07618 -15.88020 -15.12062 -14.85674 -14.61291 -14.60421 -14.38241 -14.22920 -14.07399 -13.92907 -13.63858 -13.51415 -13.43345 -13.36890 -13.07467 -12.96207 -12.81847 -12.76734 -12.39999 -12.18618 -11.95018 -11.89788 -11.79506 -11.76303 -11.63684 -11.16385 -11.04251 -10.47437 -10.13720 -9.88408 -9.25391 -8.50694 -6.13083 0.93157 1.14957 1.19134 1.34053 1.43928 1.50161 1.75078 2.01691 2.03176 2.16862 2.59656 2.99103 3.71817 3.79937 3.90189 3.95274 4.03796 4.12448 4.24593 4.31318 4.32406 4.33779 4.37678 4.49557 4.61586 4.65870 4.68114 4.73480 4.77790 4.83750 4.92928 5.00240 5.11427 5.16642 5.20744 5.25636 5.32688 5.33668 5.48158 5.53068 5.80007 6.06841 6.17919 6.50560 6.74948 6.78656 6.92384 7.33245 7.69096 8.63720 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.004294 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.669252 B = 6519.472814 C = 7278.133724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.450 3.550 4 O -0.520 6.520 5 C 0.097 3.903 6 N -0.463 5.463 7 C -0.340 4.340 8 H 0.081 0.919 9 C 0.023 3.977 10 N -0.894 5.894 11 Si 0.913 3.087 12 H -0.249 1.249 13 H -0.279 1.279 14 H -0.250 1.250 15 C 0.495 3.505 16 O -0.598 6.598 17 C -0.103 4.103 18 C 0.016 3.984 19 H 0.080 0.920 20 C -0.140 4.140 21 C -0.244 4.244 22 C 0.080 3.920 23 C -0.080 4.080 24 N -0.328 5.328 25 N -0.470 5.470 26 H 0.449 0.551 27 C 0.098 3.902 28 C -0.093 4.093 29 H 0.055 0.945 30 H 0.140 0.860 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.131 0.869 34 H 0.280 0.720 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 0.836 11.349 11.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.291 3.709 4 O -0.408 6.408 5 C -0.028 4.028 6 N -0.185 5.185 7 C -0.467 4.467 8 H 0.099 0.901 9 C -0.181 4.181 10 N -0.530 5.530 11 Si 0.737 3.263 12 H -0.175 1.175 13 H -0.205 1.205 14 H -0.174 1.174 15 C 0.287 3.713 16 O -0.483 6.483 17 C -0.142 4.142 18 C -0.004 4.004 19 H 0.099 0.901 20 C -0.197 4.197 21 C -0.255 4.255 22 C -0.086 4.086 23 C -0.139 4.139 24 N -0.152 5.152 25 N -0.180 5.180 26 H 0.296 0.704 27 C -0.031 4.031 28 C -0.151 4.151 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.809 2.096 11.486 11.815 hybrid contribution 0.289 -0.869 -0.544 1.065 sum 2.098 1.227 10.942 11.209 Atomic orbital electron populations 1.23549 0.74925 1.05820 1.02210 1.86490 1.25120 1.32512 1.84142 1.24681 0.92910 0.81636 0.71638 1.90597 1.67225 1.37440 1.45549 1.21488 0.87469 0.88009 1.05864 1.43496 1.59531 1.08987 1.06475 1.18904 1.43040 0.97347 0.87440 0.90111 1.25920 0.96740 1.01240 0.94188 1.69853 1.41662 1.42628 0.98894 0.86357 0.80001 0.80130 0.79764 1.17523 1.20494 1.17369 1.20997 0.77219 0.90856 0.82238 1.90502 1.56401 1.69642 1.31752 1.21457 1.03294 0.90699 0.98764 1.19029 0.97669 0.89883 0.93793 0.90127 1.21843 0.95993 1.01260 1.00601 1.19770 0.97886 0.96090 1.11795 1.22385 0.97692 0.90498 0.98034 1.20392 0.90463 1.03276 0.99722 1.77168 0.96519 1.22998 1.18564 1.46087 1.18558 1.06316 1.47089 0.70408 1.21302 0.97409 0.85298 0.99128 1.20614 0.95380 0.98758 1.00348 0.92610 0.84208 0.92123 0.87671 0.85177 0.90963 0.90177 0.89644 0.93675 0.92139 0.92606 0.89197 0.90559 0.90890 0.89251 0.88426 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.37 -12.98 10.57 -51.44 -0.54 -13.52 16 3 C 0.45 19.42 8.02 71.24 0.57 19.99 16 4 O -0.52 -25.45 16.18 21.96 0.36 -25.10 16 5 C 0.10 4.17 4.85 85.63 0.42 4.59 16 6 N -0.46 -22.05 1.70 -639.60 -1.09 -23.14 16 7 C -0.34 -17.78 9.20 84.04 0.77 -17.01 16 8 H 0.08 4.58 7.00 -2.91 -0.02 4.56 16 9 C 0.02 1.21 5.32 84.93 0.45 1.66 16 10 N -0.89 -49.29 13.96 21.66 0.30 -48.99 16 11 Si 0.91 38.72 25.04 68.60 1.72 40.43 16 12 H -0.25 -9.71 6.56 99.48 0.65 -9.06 16 13 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 15 C 0.49 22.25 7.23 87.66 0.63 22.89 16 16 O -0.60 -27.50 13.87 -3.06 -0.04 -27.54 16 17 C -0.10 -4.02 3.75 29.85 0.11 -3.91 16 18 C 0.02 0.54 2.19 -11.54 -0.03 0.51 16 19 H 0.08 2.63 6.42 -2.39 -0.02 2.62 16 20 C -0.14 -4.60 8.75 71.98 0.63 -3.97 16 21 C -0.24 -7.40 4.81 -20.14 -0.10 -7.49 16 22 C 0.08 2.50 7.06 43.10 0.30 2.81 16 23 C -0.08 -2.30 8.63 71.24 0.61 -1.68 16 24 N -0.33 -10.06 12.70 -47.38 -0.60 -10.66 16 25 N -0.47 -11.22 7.36 -48.00 -0.35 -11.58 16 26 H 0.45 7.24 8.96 -213.33 -1.91 5.33 16 27 C 0.10 2.42 7.21 41.41 0.30 2.72 16 28 C -0.09 -1.57 10.12 71.24 0.72 -0.85 16 29 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 32 H 0.11 4.47 2.93 -2.39 -0.01 4.47 16 33 H 0.13 5.10 7.36 -2.39 -0.02 5.09 16 34 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.08 3.28 5.14 -2.39 -0.01 3.27 16 36 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.04 1.71 6.33 -2.38 -0.02 1.69 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.77 5.38 -2.39 -0.01 1.76 16 40 H 0.09 2.26 7.62 -2.39 -0.02 2.25 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 42 H 0.07 2.30 5.31 -2.39 -0.01 2.28 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.09 1.56 7.05 -2.39 -0.02 1.54 16 Total: -1.00 -69.47 362.74 5.43 -64.04 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.92 Total: 33.86 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 6.60 Total: 22.20 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -1.74 Total: -94.37 kcal Atomic # 8 Polarization: -65.93 SS G_CDS: -0.23 Total: -66.16 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.72 Total: 40.43 kcal Total: -69.47 5.43 -64.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534589283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.415 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds