Wall clock time and date at job start Tue Mar 31 2020 13:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46956 * 110.99958 * 2 1 4 4 C 1.53052 * 109.36335 * 176.81201 * 3 2 1 5 5 N 1.46960 * 109.36414 * 58.39592 * 4 3 2 6 6 C 1.46900 * 110.99551 * 176.81072 * 5 4 3 7 7 H 1.09005 * 109.46907 * 187.17321 * 6 5 4 8 8 C 1.52996 * 109.47406 * 307.17639 * 6 5 4 9 9 N 1.46499 * 109.47147 * 304.99917 * 8 6 5 10 10 C 1.34770 * 120.00345 * 180.02562 * 9 8 6 11 11 O 1.21694 * 120.00027 * 359.97438 * 10 9 8 12 12 C 1.46375 * 120.00355 * 180.02562 * 10 9 8 13 13 H 1.08000 * 119.99872 * 359.97438 * 12 10 9 14 14 C 1.40051 * 120.00162 * 179.97438 * 12 10 9 15 15 N 1.30669 * 120.00229 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99914 * 180.02562 * 14 12 10 17 17 H 1.48489 * 109.47119 * 89.99887 * 16 14 12 18 18 H 1.48498 * 109.46723 * 210.00014 * 16 14 12 19 19 H 1.48506 * 109.46950 * 329.99518 * 16 14 12 20 20 C 1.50705 * 109.47333 * 67.17694 * 6 5 4 21 21 C 1.33386 * 125.20327 * 120.40102 * 20 6 5 22 22 C 1.38432 * 114.91718 * 179.86541 * 21 20 6 23 23 C 1.33381 * 114.92014 * 0.42580 * 22 21 20 24 24 S 1.75883 * 125.19984 * 300.71411 * 20 6 5 25 25 C 1.46954 * 110.88183 * 300.68202 * 5 4 3 26 26 C 1.46960 * 110.99870 * 236.19519 * 2 1 3 27 27 H 1.08999 * 109.46840 * 183.79929 * 1 2 3 28 28 H 1.08999 * 109.46858 * 63.80525 * 1 2 3 29 29 H 1.09000 * 109.47309 * 303.80457 * 1 2 3 30 30 H 1.09001 * 109.48664 * 296.77233 * 3 2 1 31 31 H 1.08992 * 109.49004 * 56.84066 * 3 2 1 32 32 H 1.09004 * 109.48782 * 298.42891 * 4 3 2 33 33 H 1.09000 * 109.50307 * 178.37559 * 4 3 2 34 34 H 1.08991 * 109.47182 * 65.00048 * 8 6 5 35 35 H 1.09000 * 109.47034 * 185.00554 * 8 6 5 36 36 H 0.97008 * 120.00096 * 359.97438 * 9 8 6 37 37 H 0.96996 * 120.00464 * 179.97438 * 15 14 12 38 38 H 1.07993 * 122.54117 * 0.02562 * 21 20 6 39 39 H 1.08001 * 122.53399 * 180.20496 * 22 21 20 40 40 H 1.08003 * 125.20180 * 179.79291 * 23 22 21 41 41 H 1.09000 * 109.48941 * 299.35139 * 25 5 4 42 42 H 1.08997 * 109.50510 * 179.30361 * 25 5 4 43 43 H 1.08995 * 109.48880 * 303.15824 * 26 2 1 44 44 H 1.08992 * 109.48495 * 63.22346 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0803 5 7 4.0501 0.5657 -1.0597 6 6 5.5191 0.5658 -1.0597 7 1 5.8825 0.1051 -1.9784 8 6 6.0291 2.0057 -0.9748 9 7 5.4451 2.7955 -2.0617 10 6 5.7539 4.1013 -2.1872 11 8 6.5177 4.6246 -1.3974 12 6 5.1699 4.8906 -3.2729 13 1 4.4918 4.4263 -3.9736 14 6 5.4905 6.2477 -3.4029 15 7 6.3106 6.8095 -2.5548 16 14 4.7446 7.2550 -4.7880 17 1 3.4664 7.8562 -4.3300 18 1 5.6873 8.3339 -5.1785 19 1 4.4873 6.3755 -5.9567 20 6 6.0215 -0.2158 0.1269 21 6 6.7979 -1.2984 0.0617 22 6 7.1364 -1.8480 1.2864 23 6 6.6276 -1.2168 2.3455 24 16 5.6673 0.1557 1.8092 25 6 3.5234 -0.8062 -1.0597 26 6 1.9957 -0.7633 -1.1400 27 1 -0.3633 -1.0254 0.0681 28 1 -0.3633 0.4536 -0.9221 29 1 -0.3634 0.5717 0.8539 30 1 1.6939 1.8773 -0.9174 31 1 1.6013 1.9128 0.8601 32 1 3.8254 0.8480 1.0107 33 1 3.9181 2.3447 0.0514 34 1 5.7408 2.4374 -0.0165 35 1 7.1154 2.0123 -1.0642 36 1 4.8365 2.3784 -2.6916 37 1 6.5330 7.7493 -2.6451 38 1 7.1388 -1.7132 -0.8753 39 1 7.7620 -2.7237 1.3770 40 1 6.7819 -1.5044 3.3750 41 1 3.8253 -1.3116 -0.1423 42 1 3.9178 -1.3475 -1.9196 43 1 1.6013 -1.7790 -1.1109 44 1 1.6938 -0.2822 -2.0703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547471793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:41 Heat of formation + Delta-G solvation = 19.563237 kcal Electronic energy + Delta-G solvation = -25942.256294 eV Core-core repulsion = 22407.629897 eV Total energy + Delta-G solvation = -3534.626397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83361 -37.81570 -37.17113 -35.76486 -33.03484 -32.20012 -30.90428 -30.72553 -28.20891 -27.17575 -25.68808 -24.09325 -23.63048 -23.32799 -21.21473 -20.17330 -19.35264 -18.96968 -17.45477 -16.89810 -15.95951 -15.65490 -15.30187 -15.05337 -15.01649 -14.89217 -14.68282 -14.02944 -13.96485 -13.86373 -13.13061 -12.83351 -12.69038 -12.58867 -12.41903 -12.29568 -12.12199 -11.94833 -11.85617 -11.43354 -11.27621 -11.13532 -11.05566 -10.90258 -10.68351 -10.56609 -10.38736 -10.30909 -10.17895 -8.80614 -8.73204 -8.49339 -8.43745 -8.06967 -7.55131 -7.39671 -6.13273 -4.57569 1.03057 1.68954 2.08100 2.76648 3.16915 3.23785 3.27224 3.86141 3.93841 4.14804 4.58473 4.65249 4.88138 4.95427 5.02239 5.07718 5.23967 5.28198 5.34890 5.40550 5.47558 5.49992 5.53872 5.57945 5.61524 5.63438 5.73972 5.78269 5.86999 5.93121 6.06324 6.10520 6.11700 6.30697 6.41475 6.45557 6.49828 6.89461 6.92536 7.12645 7.16134 7.48866 8.04321 8.18436 8.40857 9.08388 9.64850 10.66300 10.85804 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.004198 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.345427 B = 6668.592294 C = 8204.620348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.061 3.939 4 C 0.042 3.958 5 N -0.515 5.515 6 C 0.143 3.857 7 H 0.104 0.896 8 C 0.143 3.857 9 N -0.756 5.756 10 C 0.555 3.445 11 O -0.584 6.584 12 C -0.543 4.543 13 H 0.067 0.933 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.197 4.197 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.235 4.235 24 S 0.129 5.871 25 C 0.055 3.945 26 C 0.058 3.942 27 H 0.065 0.935 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.388 0.612 37 H 0.267 0.733 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 -17.967 5.817 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.067 4.067 4 C -0.087 4.087 5 N -0.238 5.238 6 C 0.032 3.968 7 H 0.122 0.878 8 C 0.017 3.983 9 N -0.413 5.413 10 C 0.359 3.641 11 O -0.467 6.467 12 C -0.580 4.580 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.398 5.398 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.317 4.317 21 C -0.166 4.166 22 C -0.167 4.167 23 C -0.371 4.371 24 S 0.393 5.607 25 C -0.073 4.073 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.220 0.780 37 H 0.078 0.922 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.175 0.825 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.201 -16.290 7.219 19.218 hybrid contribution 0.259 -0.936 -1.560 1.838 sum -6.942 -17.226 5.658 19.415 Atomic orbital electron populations 1.22324 0.87451 1.01852 1.00597 1.62185 1.07587 1.14414 1.42833 1.22136 0.94367 0.88798 1.01440 1.22581 0.94353 1.00053 0.91673 1.62456 1.05568 1.13262 1.42480 1.20736 0.86867 0.95820 0.93392 0.87830 1.20939 0.97473 0.86963 0.92922 1.45979 1.52325 1.11195 1.31773 1.18206 0.81283 0.78948 0.85679 1.90603 1.39430 1.70386 1.46290 1.20867 1.29570 0.94379 1.13198 0.91515 1.25688 0.93611 0.97956 0.95849 1.70023 1.26302 1.11557 1.31946 0.86416 0.79251 0.79581 0.81742 1.19833 1.20546 1.18955 1.25403 1.05999 1.02053 0.98272 1.20087 1.00674 0.96712 0.99106 1.20081 1.02930 1.02056 0.91664 1.25923 1.05520 1.02772 1.02871 1.84610 1.47943 1.29152 0.98947 1.22153 0.94047 0.89792 1.01309 1.22141 0.94608 0.98121 0.92119 0.91640 0.95565 0.91464 0.93390 0.90363 0.93238 0.88536 0.93217 0.92662 0.77977 0.92234 0.84542 0.84866 0.82507 0.93564 0.90420 0.90679 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.60 60.07 0.58 0.83 16 2 N -0.55 -6.44 4.97 -242.76 -1.21 -7.65 16 3 C 0.06 0.80 5.62 -3.77 -0.02 0.78 16 4 C 0.04 0.61 4.62 -3.76 -0.02 0.60 16 5 N -0.51 -7.14 4.20 -227.88 -0.96 -8.10 16 6 C 0.14 2.08 2.52 -68.86 -0.17 1.90 16 7 H 0.10 1.42 8.09 -51.93 -0.42 1.00 16 8 C 0.14 2.75 4.39 -4.04 -0.02 2.73 16 9 N -0.76 -16.76 5.27 -61.73 -0.33 -17.08 16 10 C 0.56 15.74 7.75 -12.99 -0.10 15.64 16 11 O -0.58 -18.96 15.02 5.19 0.08 -18.89 16 12 C -0.54 -15.37 9.54 -35.63 -0.34 -15.71 16 13 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 14 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 15 N -0.77 -23.22 11.83 55.55 0.66 -22.56 16 16 Si 0.91 20.28 29.56 -169.99 -5.02 15.26 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 20 C -0.20 -2.66 3.63 -36.00 -0.13 -2.79 16 21 C -0.13 -1.62 10.01 -41.21 -0.41 -2.03 16 22 C -0.14 -1.53 10.18 -41.21 -0.42 -1.95 16 23 C -0.24 -2.70 11.23 29.04 0.33 -2.38 16 24 S 0.13 1.70 19.48 -107.50 -2.09 -0.39 16 25 C 0.06 0.65 5.21 -3.77 -0.02 0.63 16 26 C 0.06 0.65 5.62 -3.77 -0.02 0.63 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.05 0.72 4.45 -30.99 -0.14 0.58 16 33 H 0.10 1.69 6.03 -51.93 -0.31 1.38 16 34 H 0.05 1.03 6.28 -51.93 -0.33 0.70 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.39 7.85 8.12 -40.82 -0.33 7.52 16 37 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 38 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.16 1.45 8.06 -52.48 -0.42 1.02 16 41 H 0.05 0.59 7.12 -51.93 -0.37 0.22 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -33.63 360.72 -10.82 -44.45 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.52 Total: 8.26 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.87 Total: 1.26 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -1.83 Total: -55.39 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.08 Total: -18.89 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.09 Total: -0.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.63 -10.82 -44.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547471793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.009 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds