Wall clock time and date at job start Tue Mar 31 2020 13:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46956 * 110.99958 * 2 1 4 4 C 1.53052 * 109.36335 * 176.81201 * 3 2 1 5 5 N 1.46960 * 109.36414 * 58.39592 * 4 3 2 6 6 C 1.46900 * 110.99551 * 176.81072 * 5 4 3 7 7 H 1.09005 * 109.46907 * 187.17321 * 6 5 4 8 8 C 1.52996 * 109.47406 * 307.17639 * 6 5 4 9 9 N 1.46499 * 109.47147 * 304.99917 * 8 6 5 10 10 C 1.34770 * 120.00345 * 180.02562 * 9 8 6 11 11 O 1.21694 * 120.00027 * 359.97438 * 10 9 8 12 12 C 1.46375 * 120.00355 * 180.02562 * 10 9 8 13 13 H 1.08000 * 119.99872 * 359.97438 * 12 10 9 14 14 C 1.40051 * 120.00162 * 179.97438 * 12 10 9 15 15 N 1.30669 * 120.00229 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99914 * 180.02562 * 14 12 10 17 17 H 1.48489 * 109.47119 * 89.99887 * 16 14 12 18 18 H 1.48498 * 109.46723 * 210.00014 * 16 14 12 19 19 H 1.48506 * 109.46950 * 329.99518 * 16 14 12 20 20 C 1.50705 * 109.47333 * 67.17694 * 6 5 4 21 21 C 1.33386 * 125.20327 * 120.40102 * 20 6 5 22 22 C 1.38432 * 114.91718 * 179.86541 * 21 20 6 23 23 C 1.33381 * 114.92014 * 0.42580 * 22 21 20 24 24 S 1.75883 * 125.19984 * 300.71411 * 20 6 5 25 25 C 1.46954 * 110.88183 * 300.68202 * 5 4 3 26 26 C 1.46960 * 110.99870 * 236.19519 * 2 1 3 27 27 H 1.08999 * 109.46840 * 183.79929 * 1 2 3 28 28 H 1.08999 * 109.46858 * 63.80525 * 1 2 3 29 29 H 1.09000 * 109.47309 * 303.80457 * 1 2 3 30 30 H 1.09001 * 109.48664 * 296.77233 * 3 2 1 31 31 H 1.08992 * 109.49004 * 56.84066 * 3 2 1 32 32 H 1.09004 * 109.48782 * 298.42891 * 4 3 2 33 33 H 1.09000 * 109.50307 * 178.37559 * 4 3 2 34 34 H 1.08991 * 109.47182 * 65.00048 * 8 6 5 35 35 H 1.09000 * 109.47034 * 185.00554 * 8 6 5 36 36 H 0.97008 * 120.00096 * 359.97438 * 9 8 6 37 37 H 0.96996 * 120.00464 * 179.97438 * 15 14 12 38 38 H 1.07993 * 122.54117 * 0.02562 * 21 20 6 39 39 H 1.08001 * 122.53399 * 180.20496 * 22 21 20 40 40 H 1.08003 * 125.20180 * 179.79291 * 23 22 21 41 41 H 1.09000 * 109.48941 * 299.35139 * 25 5 4 42 42 H 1.08997 * 109.50510 * 179.30361 * 25 5 4 43 43 H 1.08995 * 109.48880 * 303.15824 * 26 2 1 44 44 H 1.08992 * 109.48495 * 63.22346 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0803 5 7 4.0501 0.5657 -1.0597 6 6 5.5191 0.5658 -1.0597 7 1 5.8825 0.1051 -1.9784 8 6 6.0291 2.0057 -0.9748 9 7 5.4451 2.7955 -2.0617 10 6 5.7539 4.1013 -2.1872 11 8 6.5177 4.6246 -1.3974 12 6 5.1699 4.8906 -3.2729 13 1 4.4918 4.4263 -3.9736 14 6 5.4905 6.2477 -3.4029 15 7 6.3106 6.8095 -2.5548 16 14 4.7446 7.2550 -4.7880 17 1 3.4664 7.8562 -4.3300 18 1 5.6873 8.3339 -5.1785 19 1 4.4873 6.3755 -5.9567 20 6 6.0215 -0.2158 0.1269 21 6 6.7979 -1.2984 0.0617 22 6 7.1364 -1.8480 1.2864 23 6 6.6276 -1.2168 2.3455 24 16 5.6673 0.1557 1.8092 25 6 3.5234 -0.8062 -1.0597 26 6 1.9957 -0.7633 -1.1400 27 1 -0.3633 -1.0254 0.0681 28 1 -0.3633 0.4536 -0.9221 29 1 -0.3634 0.5717 0.8539 30 1 1.6939 1.8773 -0.9174 31 1 1.6013 1.9128 0.8601 32 1 3.8254 0.8480 1.0107 33 1 3.9181 2.3447 0.0514 34 1 5.7408 2.4374 -0.0165 35 1 7.1154 2.0123 -1.0642 36 1 4.8365 2.3784 -2.6916 37 1 6.5330 7.7493 -2.6451 38 1 7.1388 -1.7132 -0.8753 39 1 7.7620 -2.7237 1.3770 40 1 6.7819 -1.5044 3.3750 41 1 3.8253 -1.3116 -0.1423 42 1 3.9178 -1.3475 -1.9196 43 1 1.6013 -1.7790 -1.1109 44 1 1.6938 -0.2822 -2.0703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547471793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:40 Heat of formation + Delta-G solvation = -6.209632 kcal Electronic energy + Delta-G solvation = -25943.373889 eV Core-core repulsion = 22407.629897 eV Total energy + Delta-G solvation = -3535.743992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96927 -39.22522 -38.66976 -37.00698 -34.87778 -34.22669 -32.00327 -31.94223 -29.40342 -28.70591 -27.30600 -25.26325 -24.60489 -24.38710 -22.49559 -21.69994 -20.83422 -19.94262 -19.26341 -18.17561 -17.42961 -17.04676 -16.71115 -16.35322 -16.03931 -16.01160 -15.79400 -15.69794 -15.38265 -15.17894 -14.51387 -14.30680 -13.87974 -13.73972 -13.58472 -13.46626 -13.32304 -13.11089 -12.98085 -12.87590 -12.75461 -12.59789 -12.57951 -12.42937 -12.17394 -12.00529 -11.74295 -11.65641 -11.38475 -10.91112 -9.88346 -9.72909 -9.51776 -9.40237 -9.36905 -9.11739 -8.26164 -6.81485 0.06344 0.70101 1.13169 1.40714 1.42356 1.57412 1.84727 2.26312 2.50513 2.78133 2.97818 3.15941 3.65728 3.76922 3.78351 3.96276 4.07895 4.19088 4.23592 4.25689 4.36872 4.43769 4.53483 4.61878 4.66261 4.68891 4.69180 4.72182 4.83042 4.89457 4.92881 5.01508 5.03433 5.08778 5.19704 5.34634 5.36981 5.59456 5.84201 5.92917 5.93267 6.11486 6.13674 6.29384 6.32380 6.90195 7.63188 8.53903 8.71449 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.004198 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.345427 B = 6668.592294 C = 8204.620348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.551 5.551 3 C 0.066 3.934 4 C 0.048 3.952 5 N -0.521 5.521 6 C 0.159 3.841 7 H 0.118 0.882 8 C 0.150 3.850 9 N -0.739 5.739 10 C 0.540 3.460 11 O -0.636 6.636 12 C -0.570 4.570 13 H 0.085 0.915 14 C 0.030 3.970 15 N -0.823 5.823 16 Si 0.996 3.004 17 H -0.263 1.263 18 H -0.273 1.273 19 H -0.249 1.249 20 C -0.217 4.217 21 C -0.123 4.123 22 C -0.140 4.140 23 C -0.226 4.226 24 S 0.081 5.919 25 C 0.060 3.940 26 C 0.060 3.940 27 H 0.083 0.917 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.034 0.966 36 H 0.399 0.601 37 H 0.273 0.727 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.181 0.819 41 H 0.041 0.959 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -20.283 4.625 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.276 5.276 3 C -0.062 4.062 4 C -0.081 4.081 5 N -0.244 5.244 6 C 0.048 3.952 7 H 0.136 0.864 8 C 0.024 3.976 9 N -0.393 5.393 10 C 0.343 3.657 11 O -0.524 6.524 12 C -0.607 4.607 13 H 0.103 0.897 14 C -0.185 4.185 15 N -0.453 5.453 16 Si 0.815 3.185 17 H -0.187 1.187 18 H -0.198 1.198 19 H -0.172 1.172 20 C -0.336 4.336 21 C -0.155 4.155 22 C -0.170 4.170 23 C -0.361 4.361 24 S 0.346 5.654 25 C -0.068 4.068 26 C -0.068 4.068 27 H 0.101 0.899 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.233 0.767 37 H 0.083 0.917 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.198 0.802 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.356 -18.676 6.018 21.327 hybrid contribution 0.653 -0.323 -1.102 1.321 sum -7.703 -19.000 4.916 21.083 Atomic orbital electron populations 1.22386 0.85917 1.03093 1.00743 1.62209 1.08996 1.13112 1.43272 1.22020 0.93413 0.89965 1.00823 1.22403 0.95247 0.98086 0.92402 1.62459 1.05056 1.14792 1.42114 1.20433 0.87505 0.92472 0.94791 0.86446 1.20916 0.96143 0.89664 0.90836 1.45585 1.51640 1.09808 1.32317 1.18582 0.80885 0.80722 0.85463 1.90555 1.41716 1.72031 1.48057 1.21383 1.30154 0.95447 1.13688 0.89719 1.26935 0.93550 0.99151 0.98831 1.70195 1.28125 1.12366 1.34574 0.85053 0.78298 0.77471 0.77664 1.18724 1.19829 1.17229 1.25194 1.07913 1.03100 0.97418 1.20425 0.98868 0.95678 1.00515 1.20416 1.02873 1.02761 0.90932 1.26210 1.04384 1.01201 1.04291 1.84782 1.49563 1.31115 0.99985 1.22202 0.94609 0.88241 1.01746 1.22199 0.94018 0.99121 0.91496 0.89851 0.95675 0.91054 0.94966 0.89993 0.92812 0.92428 0.95205 0.94723 0.76670 0.91700 0.82504 0.81909 0.80190 0.94076 0.88721 0.88342 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.60 127.69 1.23 1.69 16 2 N -0.55 -12.35 4.97 -921.95 -4.58 -16.93 16 3 C 0.07 1.78 5.62 86.31 0.49 2.26 16 4 C 0.05 1.45 4.62 86.31 0.40 1.85 16 5 N -0.52 -14.39 4.20 -874.86 -3.68 -18.07 16 6 C 0.16 4.62 2.52 44.17 0.11 4.73 16 7 H 0.12 3.08 8.09 -2.38 -0.02 3.06 16 8 C 0.15 6.06 4.39 86.38 0.38 6.44 16 9 N -0.74 -34.05 5.27 -467.43 -2.46 -36.51 16 10 C 0.54 31.95 7.75 86.36 0.67 32.62 16 11 O -0.64 -43.64 15.02 -4.33 -0.07 -43.71 16 12 C -0.57 -32.88 9.54 24.83 0.24 -32.64 16 13 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 14 C 0.03 1.71 5.50 85.31 0.47 2.18 16 15 N -0.82 -51.27 11.83 21.84 0.26 -51.01 16 16 Si 1.00 41.63 29.56 68.60 2.03 43.65 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 20 C -0.22 -5.71 3.63 24.59 0.09 -5.62 16 21 C -0.12 -2.69 10.01 21.22 0.21 -2.47 16 22 C -0.14 -2.72 10.18 21.22 0.22 -2.51 16 23 C -0.23 -4.73 11.23 66.72 0.75 -3.98 16 24 S 0.08 2.17 19.48 -56.49 -1.10 1.07 16 25 C 0.06 1.31 5.21 86.31 0.45 1.76 16 26 C 0.06 1.21 5.62 86.31 0.49 1.69 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16 32 H 0.05 1.61 4.45 -15.70 -0.07 1.54 16 33 H 0.06 2.18 6.03 -2.39 -0.01 2.17 16 34 H 0.03 1.33 6.28 -2.39 -0.02 1.32 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.40 16.45 8.12 -92.70 -0.75 15.70 16 37 H 0.27 15.42 8.29 -92.71 -0.77 14.66 16 38 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.04 0.97 7.12 -2.39 -0.02 0.95 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -76.51 360.72 -3.23 -79.74 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.20 Total: 33.78 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.18 Total: 7.99 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -10.46 Total: -122.51 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.07 Total: -43.71 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.10 Total: 1.07 kcal Total: -76.51 -3.23 -79.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547471793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.526 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds