Wall clock time and date at job start Tue Mar 31 2020 13:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00049 * 2 1 4 4 N 1.34773 * 119.99905 * 179.97438 * 2 1 3 5 5 C 1.39002 * 120.00463 * 180.02562 * 4 2 1 6 6 N 1.29621 * 124.95183 * 179.97438 * 5 4 2 7 7 C 1.31979 * 116.92391 * 180.02562 * 6 5 4 8 8 C 1.50695 * 122.71934 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47604 * 275.04089 * 8 7 6 10 10 C 1.46852 * 111.00142 * 294.20965 * 9 8 7 11 11 C 1.53035 * 109.52425 * 174.15706 * 10 9 8 12 12 C 1.53113 * 109.28069 * 59.17788 * 11 10 9 13 13 C 1.53000 * 109.52565 * 182.43754 * 12 11 10 14 14 C 1.50707 * 109.47065 * 294.68818 * 13 12 11 15 15 H 1.08000 * 119.99926 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99903 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99994 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00136 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47336 * 59.99621 * 18 16 14 20 20 H 1.48501 * 109.47435 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47065 * 299.99775 * 18 16 14 22 22 C 1.53119 * 109.16374 * 302.34786 * 12 11 10 23 23 C 1.46849 * 111.00394 * 169.99614 * 9 8 7 24 24 C 1.33444 * 114.56651 * 0.02562 * 7 6 5 25 25 S 1.70973 * 124.93840 * 359.97438 * 5 4 2 26 26 H 1.08995 * 109.47636 * 270.01027 * 1 2 3 27 27 H 1.09010 * 109.46868 * 30.00677 * 1 2 3 28 28 H 1.08998 * 109.47314 * 149.99881 * 1 2 3 29 29 H 0.97001 * 119.99978 * 359.97438 * 4 2 1 30 30 H 1.09005 * 109.47295 * 35.04537 * 8 7 6 31 31 H 1.09002 * 109.47480 * 155.03789 * 8 7 6 32 32 H 1.08995 * 109.45929 * 294.17950 * 10 9 8 33 33 H 1.09004 * 109.45781 * 54.13909 * 10 9 8 34 34 H 1.09004 * 109.50319 * 299.23159 * 11 10 9 35 35 H 1.09002 * 109.49876 * 179.12055 * 11 10 9 36 36 H 1.09005 * 109.57434 * 62.28098 * 12 11 10 37 37 H 1.09000 * 109.46840 * 54.68130 * 13 12 11 38 38 H 1.08998 * 109.47318 * 174.68743 * 13 12 11 39 39 H 0.96992 * 119.99869 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.49635 * 297.71368 * 22 12 11 41 41 H 1.09000 * 109.53945 * 177.61118 * 22 12 11 42 42 H 1.08991 * 109.46215 * 305.85664 * 23 9 8 43 43 H 1.08998 * 109.46024 * 65.83514 * 23 9 8 44 44 H 1.08001 * 125.96936 * 179.73201 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5708 -1.1673 0.0011 6 7 4.3133 -2.2298 0.0021 7 6 5.6202 -2.0456 0.0030 8 6 6.6037 -3.1874 0.0048 9 7 6.8300 -3.6367 1.3849 10 6 7.4962 -2.5937 2.1754 11 6 7.5843 -3.0378 3.6372 12 6 8.3712 -4.3485 3.7209 13 6 8.4107 -4.8294 5.1728 14 6 9.1948 -3.8483 6.0058 15 1 9.6224 -2.9699 5.5455 16 6 9.3670 -4.0727 7.3552 17 7 8.8466 -5.1428 7.9155 18 14 10.3393 -2.8571 8.3876 19 1 9.6888 -1.5236 8.3258 20 1 10.3776 -3.3238 9.7968 21 1 11.7243 -2.7570 7.8610 22 6 7.6834 -5.4041 2.8507 23 6 7.5924 -4.8915 1.4116 24 6 6.0002 -0.7664 0.0033 25 16 4.5501 0.2342 0.0005 26 1 -0.3634 0.0002 1.0276 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6958 -2.0072 0.0013 30 1 6.2039 -4.0123 -0.5850 31 1 7.5471 -2.8550 -0.4285 32 1 8.5002 -2.4278 1.7850 33 1 6.9241 -1.6681 2.1107 34 1 6.5799 -3.1904 4.0323 35 1 8.0927 -2.2701 4.2207 36 1 9.3881 -4.1875 3.3627 37 1 7.3941 -4.9029 5.5589 38 1 8.8885 -5.8081 5.2185 39 1 8.9674 -5.3004 8.8649 40 1 6.6806 -5.5940 3.2334 41 1 8.2621 -6.3276 2.8721 42 1 7.0904 -5.6347 0.7923 43 1 8.5961 -4.7148 1.0250 44 1 7.0187 -0.4072 0.0081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565597916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:23 Heat of formation + Delta-G solvation = 3.449816 kcal Electronic energy + Delta-G solvation = -24615.097776 eV Core-core repulsion = 21079.772649 eV Total energy + Delta-G solvation = -3535.325127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78414 -39.82080 -38.36368 -35.50153 -34.35023 -32.34665 -31.15479 -30.34931 -29.56808 -28.12888 -26.03936 -24.30913 -23.15060 -22.52432 -21.86189 -20.63064 -19.93630 -18.85649 -18.36140 -17.17687 -16.79953 -16.35179 -16.20374 -15.68581 -14.95776 -14.66910 -14.46220 -14.30588 -14.26177 -13.59215 -13.41479 -13.27251 -13.17092 -12.86212 -12.65875 -12.56379 -12.09309 -11.79155 -11.71936 -11.39827 -11.16016 -11.03399 -10.77412 -10.60338 -10.56238 -10.31781 -10.22893 -9.90313 -9.79564 -9.48381 -9.25495 -8.99053 -8.83732 -8.43394 -8.28198 -8.01245 -5.93543 -3.94824 0.61517 1.04175 1.77384 1.87500 2.30417 2.81358 3.36289 3.40689 3.43049 4.10424 4.26459 4.37072 4.50621 4.62570 4.80799 5.10432 5.21016 5.25215 5.37112 5.39765 5.41692 5.52049 5.54400 5.61219 5.71797 5.81462 5.94715 6.03688 6.07649 6.19256 6.30657 6.49532 6.53187 6.64434 6.72936 7.03897 7.16018 7.25494 7.34102 7.36987 7.44169 7.72933 7.74875 7.92387 8.07665 8.50772 9.11588 9.68279 11.17841 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.002656 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.860206 B =10540.070951 C =11249.789462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.509 3.491 3 O -0.511 6.511 4 N -0.623 5.623 5 C 0.233 3.767 6 N -0.490 5.490 7 C 0.110 3.890 8 C 0.128 3.872 9 N -0.529 5.529 10 C 0.053 3.947 11 C -0.098 4.098 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.111 4.111 23 C 0.062 3.938 24 C -0.309 4.309 25 S 0.231 5.769 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.424 0.576 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.966 8.271 -20.959 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.296 3.704 3 O -0.385 6.385 4 N -0.273 5.273 5 C -0.134 4.134 6 N -0.212 5.212 7 C -0.023 4.023 8 C -0.002 4.002 9 N -0.254 5.254 10 C -0.075 4.075 11 C -0.136 4.136 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.149 4.149 23 C -0.066 4.066 24 C -0.450 4.450 25 S 0.481 5.519 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.263 0.737 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.589 9.425 -20.575 27.480 hybrid contribution 1.643 -0.498 0.408 1.765 sum -13.945 8.927 -20.167 26.094 Atomic orbital electron populations 1.21847 0.88722 1.05883 1.05893 1.21323 0.91671 0.82208 0.75161 1.90698 1.69491 1.30663 1.47676 1.42962 1.01948 1.11358 1.71078 1.23434 0.90112 0.94970 1.04857 1.66071 1.04973 1.29758 1.20438 1.19589 0.88716 0.93861 1.00135 1.20537 0.94141 0.94215 0.91340 1.61852 1.49527 1.04406 1.09585 1.22275 0.95656 0.94016 0.95508 1.21523 1.00896 0.98486 0.92653 1.21234 0.96884 0.93517 0.98347 1.19110 0.97059 0.96142 0.88543 1.21225 1.33004 1.07759 0.93216 0.92794 1.25017 0.95986 0.95399 0.98107 1.69957 1.45413 1.26692 1.11577 0.86720 0.80637 0.81648 0.79353 1.20295 1.21377 1.20351 1.21686 1.01465 0.98602 0.93145 1.22102 0.95013 0.90682 0.98767 1.27290 1.05065 0.97271 1.15353 1.84808 0.93146 1.05974 1.67962 0.87713 0.87801 0.89322 0.73713 0.89439 0.93335 0.95457 0.91559 0.92045 0.91003 0.93049 0.96565 0.96774 0.93073 0.91616 0.92074 0.91492 0.95308 0.80856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 10.30 36.00 0.37 -0.13 16 2 C 0.51 4.08 7.90 -10.99 -0.09 3.99 16 3 O -0.51 -5.97 14.57 5.55 0.08 -5.89 16 4 N -0.62 -5.39 5.40 -13.07 -0.07 -5.47 16 5 C 0.23 2.86 8.19 -87.35 -0.72 2.15 16 6 N -0.49 -6.82 10.58 -11.28 -0.12 -6.94 16 7 C 0.11 1.48 5.57 -84.21 -0.47 1.01 16 8 C 0.13 1.67 5.41 -4.98 -0.03 1.64 16 9 N -0.53 -8.18 4.65 -236.12 -1.10 -9.28 16 10 C 0.05 0.86 5.24 -3.83 -0.02 0.84 16 11 C -0.10 -1.93 5.15 -26.65 -0.14 -2.07 16 12 C -0.08 -1.70 2.20 -90.50 -0.20 -1.90 16 13 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 14 C -0.51 -14.56 8.45 -34.44 -0.29 -14.85 16 15 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.11 -1.99 5.38 -26.65 -0.14 -2.13 16 23 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 24 C -0.31 -3.75 9.70 29.06 0.28 -3.47 16 25 S 0.23 2.77 20.22 -107.50 -2.17 0.59 16 26 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.10 0.28 8.14 -51.92 -0.42 -0.14 16 28 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.42 2.50 8.82 -40.82 -0.36 2.14 16 30 H 0.09 1.08 7.99 -51.93 -0.41 0.66 16 31 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 1.05 6.12 -51.93 -0.32 0.73 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.50 7.05 -51.93 -0.37 1.13 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.89 8.01 -51.93 -0.42 0.48 16 43 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -34.45 367.52 -10.68 -45.13 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.87 Total: -2.15 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.68 Total: -11.86 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.55 Total: -48.30 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: 0.08 Total: -5.89 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.17 Total: 0.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.45 -10.68 -45.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565597916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.577 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds