Wall clock time and date at job start Tue Mar 31 2020 14:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.46907 * 240.00235 * 3 2 1 5 5 H 1.48504 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00188 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47247 * 180.02562 * 12 11 10 14 14 C 1.46959 * 110.99664 * 293.79959 * 13 12 11 15 15 C 1.53050 * 109.36573 * 176.81496 * 14 13 12 16 16 N 1.46958 * 109.36748 * 58.39293 * 15 14 13 17 17 C 1.39673 * 110.99959 * 176.81464 * 16 15 14 18 18 C 1.38943 * 120.06754 * 303.80327 * 17 16 15 19 19 C 1.38092 * 119.95167 * 179.97438 * 18 17 16 20 20 C 1.38287 * 120.08253 * 0.02562 * 19 18 17 21 21 C 1.38382 * 120.14280 * 359.97438 * 20 19 18 22 22 Cl 1.73589 * 119.97863 * 180.02562 * 21 20 19 23 23 C 1.38247 * 120.04477 * 359.74133 * 21 20 19 24 24 C 1.46949 * 110.88438 * 300.68541 * 16 15 14 25 25 C 1.46953 * 111.00166 * 170.00010 * 13 12 11 26 26 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 28 28 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 29 29 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 30 30 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 31 31 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 32 32 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 33 33 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 34 34 H 1.09008 * 109.48483 * 296.77544 * 14 13 12 35 35 H 1.08997 * 109.48837 * 56.84347 * 14 13 12 36 36 H 1.09003 * 109.48443 * 298.43201 * 15 14 13 37 37 H 1.09000 * 109.50747 * 178.38041 * 15 14 13 38 38 H 1.08004 * 120.02311 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.95679 * 180.02562 * 19 18 17 40 40 H 1.08007 * 119.92589 * 179.97438 * 20 19 18 41 41 H 1.08001 * 120.04654 * 180.28285 * 23 21 20 42 42 H 1.09002 * 109.49162 * 299.35525 * 24 16 15 43 43 H 1.08995 * 109.50738 * 179.29440 * 24 16 15 44 44 H 1.09004 * 109.49228 * 303.15273 * 25 13 12 45 45 H 1.09000 * 109.49555 * 63.19681 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 7 1.8295 -7.3344 -0.0017 14 6 1.0904 -7.5338 1.2528 15 6 0.3128 -8.8500 1.1799 16 7 1.2496 -9.9571 0.9422 17 6 0.5836 -11.1848 0.9411 18 6 -0.1759 -11.5658 2.0404 19 6 -0.8337 -12.7799 2.0365 20 6 -0.7370 -13.6172 0.9402 21 6 0.0185 -13.2415 -0.1566 22 17 0.1364 -14.2955 -1.5308 23 6 0.6746 -12.0246 -0.1611 24 6 1.9886 -9.7577 -0.3122 25 6 2.7663 -8.4414 -0.2394 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.8403 -3.5488 -0.7819 30 1 0.8798 -4.9817 0.8886 31 1 0.8805 -4.9812 -0.8914 32 1 3.1554 -5.9687 -0.8900 33 1 3.1541 -5.9688 0.8899 34 1 1.7921 -7.5717 2.0861 35 1 0.3946 -6.7079 1.4001 36 1 -0.4079 -8.8019 0.3635 37 1 -0.2134 -9.0144 2.1203 38 1 -0.2517 -10.9127 2.8973 39 1 -1.4245 -13.0759 2.8908 40 1 -1.2522 -14.5665 0.9400 41 1 1.2605 -11.7293 -1.0190 42 1 1.2870 -9.7197 -1.1456 43 1 2.6844 -10.5835 -0.4599 44 1 3.2923 -8.2773 -1.1799 45 1 3.4872 -8.4894 0.5768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566116901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:51 Heat of formation + Delta-G solvation = 37.532161 kcal Electronic energy + Delta-G solvation = -24058.141976 eV Core-core repulsion = 20522.251064 eV Total energy + Delta-G solvation = -3535.890912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76889 -38.75757 -36.97821 -36.15795 -34.72786 -32.49438 -31.89960 -30.69983 -30.59884 -28.59718 -26.51671 -24.90386 -24.36530 -22.55353 -22.06508 -21.52309 -20.91523 -20.00671 -18.20636 -16.44446 -16.31896 -16.16971 -15.73707 -15.41539 -15.13777 -14.91021 -14.75153 -14.55846 -14.27807 -14.15441 -13.97463 -13.53463 -13.16686 -12.74662 -12.37739 -12.31523 -12.11954 -12.01481 -11.84587 -11.71675 -11.51830 -11.36733 -11.28425 -11.09792 -11.05686 -10.72786 -10.62292 -10.40397 -10.05784 -9.88758 -9.21200 -9.19995 -8.48901 -8.40112 -8.23806 -7.32390 -6.04013 -4.06186 0.79638 0.89633 1.75746 3.12035 3.33037 3.36807 3.39846 3.45534 3.74289 4.38524 4.42692 4.51945 4.63727 4.71294 4.79332 4.82900 4.98130 5.03325 5.10892 5.16498 5.26513 5.30013 5.31660 5.37303 5.40903 5.46565 5.62073 5.65882 5.73782 5.80137 5.83994 5.86261 5.93129 5.98791 6.19193 6.31047 6.39606 6.57460 6.81879 6.97257 7.02617 7.24857 7.41183 7.76852 8.11512 8.36549 8.59421 9.02675 9.58616 11.07062 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.031681 B = 0.001799 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.607026 B =15564.145361 C =15841.564671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.196 3.804 10 N -0.692 5.692 11 C 0.063 3.937 12 C 0.060 3.940 13 N -0.541 5.541 14 C 0.052 3.948 15 C 0.061 3.939 16 N -0.489 5.489 17 C 0.131 3.869 18 C -0.138 4.138 19 C -0.082 4.082 20 C -0.142 4.142 21 C -0.007 4.007 22 Cl -0.073 7.073 23 C -0.166 4.166 24 C 0.052 3.948 25 C 0.057 3.943 26 H 0.262 0.738 27 H -0.013 1.013 28 H 0.027 0.973 29 H 0.328 0.672 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 -29.697 1.434 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.322 5.322 11 C -0.067 4.067 12 C -0.067 4.067 13 N -0.266 5.266 14 C -0.076 4.076 15 C -0.064 4.064 16 N -0.204 5.204 17 C 0.032 3.968 18 C -0.158 4.158 19 C -0.100 4.100 20 C -0.162 4.162 21 C -0.034 4.034 22 Cl -0.044 7.044 23 C -0.187 4.187 24 C -0.075 4.075 25 C -0.072 4.072 26 H 0.072 0.928 27 H 0.005 0.995 28 H 0.045 0.955 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.291 -29.536 1.997 29.605 hybrid contribution 0.199 0.745 -0.937 1.214 sum -0.092 -28.791 1.060 28.811 Atomic orbital electron populations 1.69957 1.06084 1.26915 1.50756 1.25003 0.94903 0.99401 0.95332 0.86524 0.79403 0.82599 0.78643 1.20261 1.21331 1.20158 1.21152 0.93483 0.90256 1.50537 0.92004 1.19530 0.90529 0.87225 0.95784 1.60652 1.21407 1.01295 1.48883 1.21821 0.95164 0.89506 1.00214 1.22088 0.96004 0.87418 1.01216 1.62123 1.27738 1.02311 1.34423 1.22260 0.97929 0.96492 0.90953 1.22375 0.93242 0.88659 1.02109 1.59263 1.25671 1.00817 1.34601 1.18879 0.93188 0.91710 0.92987 1.20940 0.99187 0.97758 0.97922 1.20977 0.98174 0.93221 0.97671 1.20971 1.01045 1.01226 0.92966 1.20749 1.00394 0.92422 0.89814 1.98376 1.97207 1.65705 1.43135 1.21204 1.04054 0.94706 0.98763 1.22405 0.97521 0.98034 0.89555 1.22154 0.93857 0.89509 1.01680 0.92840 0.99532 0.95497 0.85600 0.91936 0.95557 0.91026 0.93846 0.93624 0.88971 0.92593 0.89494 0.85027 0.84862 0.85138 0.84439 0.92409 0.89616 0.89735 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.67 9.32 -34.44 -0.32 -14.99 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.20 5.17 5.44 -4.98 -0.03 5.14 16 10 N -0.69 -14.76 6.49 -115.06 -0.75 -15.50 16 11 C 0.06 1.11 5.62 -3.82 -0.02 1.09 16 12 C 0.06 0.84 5.22 -3.83 -0.02 0.82 16 13 N -0.54 -6.59 4.71 -234.46 -1.10 -7.69 16 14 C 0.05 0.59 5.41 -3.77 -0.02 0.57 16 15 C 0.06 0.60 5.38 -3.77 -0.02 0.58 16 16 N -0.49 -4.75 4.75 -170.96 -0.81 -5.56 16 17 C 0.13 1.22 5.64 -83.79 -0.47 0.75 16 18 C -0.14 -1.12 9.19 -39.37 -0.36 -1.48 16 19 C -0.08 -0.57 10.04 -39.62 -0.40 -0.97 16 20 C -0.14 -1.09 9.83 -39.51 -0.39 -1.48 16 21 C -0.01 -0.06 6.32 -39.52 -0.25 -0.31 16 22 Cl -0.07 -0.62 28.95 -51.86 -1.50 -2.12 16 23 C -0.17 -1.50 8.60 -39.35 -0.34 -1.84 16 24 C 0.05 0.47 4.29 -3.77 -0.02 0.46 16 25 C 0.06 0.57 5.61 -3.77 -0.02 0.55 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.33 6.64 8.72 -39.29 -0.34 6.29 16 30 H 0.06 1.11 6.49 -51.93 -0.34 0.78 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 33 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 35 H 0.09 1.11 6.34 -51.93 -0.33 0.78 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.72 6.82 -51.93 -0.35 0.37 16 38 H 0.13 0.92 7.19 -52.48 -0.38 0.55 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.14 1.15 5.81 -52.49 -0.31 0.85 16 42 H 0.06 0.55 7.57 -51.93 -0.39 0.16 16 43 H 0.09 0.68 7.18 -51.93 -0.37 0.31 16 44 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -30.46 371.83 -12.62 -43.08 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.00 Total: 1.30 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.77 Total: -9.63 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -1.93 Total: -54.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.46 -12.62 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566116901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.611 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds