Wall clock time and date at job start Tue Mar 31 2020 14:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.46907 * 240.00235 * 3 2 1 5 5 H 1.48504 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00188 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47247 * 180.02562 * 12 11 10 14 14 C 1.46959 * 110.99664 * 293.79959 * 13 12 11 15 15 C 1.53050 * 109.36573 * 176.81496 * 14 13 12 16 16 N 1.46958 * 109.36748 * 58.39293 * 15 14 13 17 17 C 1.39673 * 110.99959 * 176.81464 * 16 15 14 18 18 C 1.38943 * 120.06754 * 303.80327 * 17 16 15 19 19 C 1.38092 * 119.95167 * 179.97438 * 18 17 16 20 20 C 1.38287 * 120.08253 * 0.02562 * 19 18 17 21 21 C 1.38382 * 120.14280 * 359.97438 * 20 19 18 22 22 Cl 1.73589 * 119.97863 * 180.02562 * 21 20 19 23 23 C 1.38247 * 120.04477 * 359.74133 * 21 20 19 24 24 C 1.46949 * 110.88438 * 300.68541 * 16 15 14 25 25 C 1.46953 * 111.00166 * 170.00010 * 13 12 11 26 26 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 28 28 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 29 29 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 30 30 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 31 31 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 32 32 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 33 33 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 34 34 H 1.09008 * 109.48483 * 296.77544 * 14 13 12 35 35 H 1.08997 * 109.48837 * 56.84347 * 14 13 12 36 36 H 1.09003 * 109.48443 * 298.43201 * 15 14 13 37 37 H 1.09000 * 109.50747 * 178.38041 * 15 14 13 38 38 H 1.08004 * 120.02311 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.95679 * 180.02562 * 19 18 17 40 40 H 1.08007 * 119.92589 * 179.97438 * 20 19 18 41 41 H 1.08001 * 120.04654 * 180.28285 * 23 21 20 42 42 H 1.09002 * 109.49162 * 299.35525 * 24 16 15 43 43 H 1.08995 * 109.50738 * 179.29440 * 24 16 15 44 44 H 1.09004 * 109.49228 * 303.15273 * 25 13 12 45 45 H 1.09000 * 109.49555 * 63.19681 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 7 1.8295 -7.3344 -0.0017 14 6 1.0904 -7.5338 1.2528 15 6 0.3128 -8.8500 1.1799 16 7 1.2496 -9.9571 0.9422 17 6 0.5836 -11.1848 0.9411 18 6 -0.1759 -11.5658 2.0404 19 6 -0.8337 -12.7799 2.0365 20 6 -0.7370 -13.6172 0.9402 21 6 0.0185 -13.2415 -0.1566 22 17 0.1364 -14.2955 -1.5308 23 6 0.6746 -12.0246 -0.1611 24 6 1.9886 -9.7577 -0.3122 25 6 2.7663 -8.4414 -0.2394 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.8403 -3.5488 -0.7819 30 1 0.8798 -4.9817 0.8886 31 1 0.8805 -4.9812 -0.8914 32 1 3.1554 -5.9687 -0.8900 33 1 3.1541 -5.9688 0.8899 34 1 1.7921 -7.5717 2.0861 35 1 0.3946 -6.7079 1.4001 36 1 -0.4079 -8.8019 0.3635 37 1 -0.2134 -9.0144 2.1203 38 1 -0.2517 -10.9127 2.8973 39 1 -1.4245 -13.0759 2.8908 40 1 -1.2522 -14.5665 0.9400 41 1 1.2605 -11.7293 -1.0190 42 1 1.2870 -9.7197 -1.1456 43 1 2.6844 -10.5835 -0.4599 44 1 3.2923 -8.2773 -1.1799 45 1 3.4872 -8.4894 0.5768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566116901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:50 Heat of formation + Delta-G solvation = 17.328954 kcal Electronic energy + Delta-G solvation = -24059.018053 eV Core-core repulsion = 20522.251064 eV Total energy + Delta-G solvation = -3536.766989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48153 -39.56899 -37.82743 -37.23867 -36.09205 -34.48481 -32.63040 -31.69155 -31.32996 -29.90247 -27.96066 -26.17712 -25.24429 -23.64405 -23.26345 -22.69298 -22.15419 -20.83928 -18.88140 -18.55410 -17.08608 -16.95884 -16.84156 -16.62755 -16.35179 -16.10578 -15.81363 -15.46347 -15.36108 -14.94384 -14.73066 -14.67880 -14.43434 -14.25089 -13.94333 -13.61001 -13.10468 -12.93681 -12.79427 -12.74650 -12.63517 -12.53429 -12.41891 -12.32436 -12.18381 -12.10991 -11.94954 -11.75498 -11.54811 -11.28986 -10.73449 -10.65954 -9.82247 -9.38964 -9.16229 -8.92559 -8.22926 -6.34549 0.17496 0.28181 1.12477 1.41796 1.45528 1.53577 2.39531 2.46415 2.73977 2.79173 3.10285 3.67452 3.76891 3.80841 3.91832 3.97144 4.07905 4.15952 4.20458 4.25296 4.30363 4.38225 4.41290 4.46917 4.57247 4.61270 4.71474 4.74015 4.83964 4.87355 4.89174 4.95478 5.02664 5.10737 5.11771 5.25090 5.25789 5.40242 5.58513 5.60246 5.84756 5.93625 6.01500 6.06255 6.18630 6.41347 6.70644 6.87909 7.36386 8.88561 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.031681 B = 0.001799 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.607026 B =15564.145361 C =15841.564671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.210 3.790 10 N -0.688 5.688 11 C 0.068 3.932 12 C 0.076 3.924 13 N -0.548 5.548 14 C 0.053 3.947 15 C 0.068 3.932 16 N -0.493 5.493 17 C 0.115 3.885 18 C -0.143 4.143 19 C -0.078 4.078 20 C -0.144 4.144 21 C -0.019 4.019 22 Cl -0.075 7.075 23 C -0.174 4.174 24 C 0.056 3.944 25 C 0.058 3.942 26 H 0.265 0.735 27 H -0.040 1.040 28 H -0.001 1.001 29 H 0.336 0.664 30 H 0.056 0.944 31 H 0.017 0.983 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.052 0.948 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -30.542 1.822 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.320 5.320 11 C -0.062 4.062 12 C -0.052 4.052 13 N -0.273 5.273 14 C -0.075 4.075 15 C -0.057 4.057 16 N -0.208 5.208 17 C 0.017 3.983 18 C -0.163 4.163 19 C -0.097 4.097 20 C -0.164 4.164 21 C -0.047 4.047 22 Cl -0.046 7.046 23 C -0.196 4.196 24 C -0.071 4.071 25 C -0.070 4.070 26 H 0.074 0.926 27 H -0.022 1.022 28 H 0.017 0.983 29 H 0.153 0.847 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.581 -30.421 2.380 30.520 hybrid contribution -0.125 0.897 -1.046 1.384 sum 0.456 -29.524 1.335 29.558 Atomic orbital electron populations 1.70093 1.07848 1.28115 1.51352 1.25999 0.95837 1.03526 0.94536 0.85343 0.78060 0.77431 0.79200 1.19020 1.20815 1.19270 1.21527 0.93897 0.91351 1.50831 0.91540 1.19178 0.90587 0.88863 0.93145 1.60512 1.20599 1.01533 1.49306 1.21819 0.95893 0.89008 0.99441 1.21830 0.94719 0.87095 1.01562 1.62097 1.28198 1.02112 1.34924 1.22238 0.97682 0.97097 0.90523 1.22292 0.92863 0.88009 1.02536 1.59305 1.25754 1.00928 1.34822 1.18992 0.94090 0.91559 0.93649 1.21173 0.98881 0.98408 0.97864 1.21302 0.97677 0.92477 0.98230 1.21260 1.00503 1.01951 0.92651 1.20903 1.00972 0.92514 0.90274 1.98372 1.97250 1.65676 1.43321 1.21271 1.04402 0.95006 0.98915 1.22385 0.97545 0.97853 0.89329 1.22214 0.93543 0.89050 1.02167 0.92583 1.02224 0.98305 0.84657 0.92590 0.96447 0.89963 0.94178 0.93886 0.90156 0.93586 0.87980 0.84033 0.82161 0.83544 0.84322 0.92929 0.88264 0.88574 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.98 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -30.88 9.32 25.60 0.24 -30.64 16 8 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 11.43 5.44 85.56 0.47 11.90 16 10 N -0.69 -29.73 6.49 -517.93 -3.36 -33.09 16 11 C 0.07 2.43 5.62 86.30 0.48 2.91 16 12 C 0.08 2.08 5.22 86.30 0.45 2.53 16 13 N -0.55 -13.03 4.71 -895.70 -4.22 -17.25 16 14 C 0.05 1.19 5.41 86.31 0.47 1.66 16 15 C 0.07 1.29 5.38 86.31 0.46 1.75 16 16 N -0.49 -9.06 4.75 -694.80 -3.30 -12.37 16 17 C 0.12 2.01 5.64 38.21 0.22 2.23 16 18 C -0.14 -2.07 9.19 22.40 0.21 -1.87 16 19 C -0.08 -0.92 10.04 22.25 0.22 -0.70 16 20 C -0.14 -1.93 9.83 22.32 0.22 -1.71 16 21 C -0.02 -0.32 6.32 22.31 0.14 -0.18 16 22 Cl -0.08 -1.20 28.95 -2.72 -0.08 -1.28 16 23 C -0.17 -3.01 8.60 22.42 0.19 -2.82 16 24 C 0.06 0.96 4.29 86.31 0.37 1.33 16 25 C 0.06 1.11 5.61 86.31 0.48 1.59 16 26 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 27 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 28 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.34 13.58 8.72 -89.69 -0.78 12.80 16 30 H 0.06 2.06 6.49 -2.39 -0.02 2.04 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 2.09 8.03 -2.39 -0.02 2.07 16 33 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 34 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.08 1.97 6.34 -2.39 -0.02 1.96 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.58 6.82 -2.39 -0.02 1.57 16 38 H 0.14 1.71 7.19 -2.91 -0.02 1.68 16 39 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.14 2.24 5.81 -2.91 -0.02 2.22 16 42 H 0.05 0.97 7.57 -2.39 -0.02 0.95 16 43 H 0.10 1.44 7.18 -2.39 -0.02 1.43 16 44 H 0.10 1.60 8.07 -2.38 -0.02 1.58 16 45 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -65.37 371.83 -3.36 -68.74 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.20 Total: 17.07 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 5.08 Total: -11.59 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -10.60 Total: -119.22 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -65.37 -3.36 -68.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566116901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.065 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds