Wall clock time and date at job start Tue Mar 31 2020 14:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34748 * 116.99848 * 2 1 4 4 O 1.21502 * 120.00290 * 0.02562 * 3 2 1 5 5 C 1.47467 * 119.99640 * 179.97438 * 3 2 1 6 6 C 1.39793 * 120.09276 * 179.97438 * 5 3 2 7 7 C 1.37681 * 119.91026 * 180.02562 * 6 5 3 8 8 C 1.39014 * 120.09048 * 0.02562 * 7 6 5 9 9 O 1.35692 * 119.90587 * 179.97438 * 8 7 6 10 10 C 1.42905 * 117.00127 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47192 * 54.99822 * 11 10 9 13 13 O 1.42906 * 109.47007 * 294.99658 * 11 10 9 14 14 C 1.53001 * 109.47242 * 175.00315 * 11 10 9 15 15 N 1.46894 * 109.47184 * 185.00015 * 14 11 10 16 16 C 1.46903 * 110.99927 * 179.97438 * 15 14 11 17 17 C 1.53005 * 109.47199 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47294 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99616 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00154 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00154 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00161 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47036 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46903 * 119.99815 * 22 20 18 25 25 H 1.48492 * 109.47146 * 239.99744 * 22 20 18 26 26 C 1.39012 * 120.18585 * 0.26847 * 8 7 6 27 27 C 1.37681 * 120.09498 * 359.44797 * 26 8 7 28 28 H 1.09004 * 109.47763 * 300.00177 * 1 2 3 29 29 H 1.09007 * 109.47217 * 59.99943 * 1 2 3 30 30 H 1.09002 * 109.47488 * 179.97438 * 1 2 3 31 31 H 1.08008 * 120.04492 * 0.02562 * 6 5 3 32 32 H 1.07998 * 119.95703 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47103 * 300.00462 * 10 9 8 34 34 H 1.09004 * 109.47054 * 59.99966 * 10 9 8 35 35 H 0.96697 * 113.99941 * 300.00517 * 13 11 10 36 36 H 1.09005 * 109.46584 * 305.00085 * 14 11 10 37 37 H 1.09000 * 109.47396 * 64.99207 * 14 11 10 38 38 H 1.00900 * 111.00111 * 56.04434 * 15 14 11 39 39 H 1.09002 * 109.47133 * 299.99675 * 16 15 14 40 40 H 1.09000 * 109.47317 * 60.00306 * 16 15 14 41 41 H 1.09002 * 109.46883 * 299.99914 * 17 16 15 42 42 H 1.08995 * 109.46984 * 59.99652 * 17 16 15 43 43 H 0.96995 * 120.00380 * 180.02562 * 21 20 18 44 44 H 1.07996 * 119.95495 * 179.72471 * 26 8 7 45 45 H 1.08004 * 120.05122 * 180.25004 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5363 1.2778 0.0006 6 6 4.1731 2.5223 0.0000 7 6 5.5482 2.5899 0.0000 8 6 6.3034 1.4228 0.0000 9 8 7.6585 1.4938 -0.0005 10 6 8.3730 0.2562 0.0001 11 6 9.8772 0.5358 0.0000 12 1 10.1267 1.1821 0.8415 13 8 10.2416 1.1820 -1.2214 14 6 10.6413 -0.7838 0.1263 15 7 12.0790 -0.5076 0.2466 16 6 12.8460 -1.7543 0.3707 17 6 14.3355 -1.4268 0.4930 18 6 15.1224 -2.7057 0.6196 19 1 14.6112 -3.6571 0.6131 20 6 16.4948 -2.6614 0.7438 21 7 17.1173 -1.5029 0.7512 22 14 17.4702 -4.2467 0.9015 23 1 16.5414 -5.4048 0.8666 24 1 18.4330 -4.3496 -0.2244 25 1 18.2114 -4.2459 2.1882 26 6 5.6743 0.1832 -0.0056 27 6 4.2996 0.1066 0.0003 28 1 -0.3635 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.5870 3.4295 -0.0004 32 1 6.0409 3.5509 -0.0008 33 1 8.1100 -0.3148 0.8905 34 1 8.1094 -0.3160 -0.8894 35 1 10.0477 0.6630 -2.0139 36 1 10.2986 -1.3186 1.0122 37 1 10.4613 -1.3940 -0.7587 38 1 12.2649 0.1097 1.0228 39 1 12.5186 -2.2955 1.2585 40 1 12.6814 -2.3716 -0.5125 41 1 14.6626 -0.8858 -0.3950 42 1 14.5005 -0.8093 1.3759 43 1 18.0829 -1.4717 0.8382 44 1 6.2647 -0.7211 -0.0101 45 1 3.8116 -0.8569 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566132216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:46 Heat of formation + Delta-G solvation = -153.899701 kcal Electronic energy + Delta-G solvation = -25392.658974 eV Core-core repulsion = 21375.465038 eV Total energy + Delta-G solvation = -4017.193937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07852 -40.34719 -38.41141 -37.27575 -36.69737 -35.33887 -32.97260 -31.91336 -31.24598 -30.66951 -28.97158 -27.97665 -25.76222 -24.09477 -23.71577 -22.80232 -21.74254 -21.20031 -20.50377 -18.82900 -18.18406 -17.56854 -17.00330 -16.79318 -16.72750 -16.29117 -15.75224 -15.36893 -15.21782 -14.73319 -14.51202 -14.45329 -14.26893 -13.94544 -13.86042 -13.52142 -13.44455 -12.95404 -12.84462 -12.60802 -12.48466 -12.12742 -12.11116 -11.53612 -11.41931 -11.24904 -11.10094 -10.99802 -10.96437 -10.93601 -10.60411 -10.22228 -10.02420 -9.60105 -9.41310 -9.16860 -8.77602 -8.38636 -7.91870 -6.02468 -4.05620 0.30424 0.84062 2.12247 2.26129 2.60437 3.29016 3.30213 3.36499 3.39920 4.13831 4.22566 4.29958 4.32645 4.39565 4.45687 4.63103 4.64863 4.66976 4.73530 4.81618 4.89326 4.94476 5.05785 5.06354 5.15026 5.21657 5.33552 5.48622 5.56733 5.57593 5.76113 5.80453 5.87400 5.96686 6.13216 6.23167 6.29165 6.87883 6.90396 7.32382 7.35683 7.60279 7.67592 7.76784 7.87863 8.04011 8.39115 9.01831 9.58479 11.08906 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.001516 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.263036 B =18469.943853 C =19154.071214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.514 3.486 4 O -0.511 6.511 5 C -0.177 4.177 6 C -0.012 4.012 7 C -0.165 4.165 8 C 0.174 3.826 9 O -0.294 6.294 10 C 0.024 3.976 11 C 0.114 3.886 12 H 0.108 0.892 13 O -0.537 6.537 14 C 0.031 3.969 15 N -0.681 5.681 16 C 0.066 3.934 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.284 1.284 26 C -0.227 4.227 27 C -0.017 4.017 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.372 0.628 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.339 0.661 39 H 0.015 0.985 40 H 0.058 0.942 41 H 0.027 0.973 42 H 0.014 0.986 43 H 0.260 0.740 44 H 0.138 0.862 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.180 3.888 -1.566 32.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.360 3.640 4 O -0.401 6.401 5 C -0.178 4.178 6 C -0.030 4.030 7 C -0.184 4.184 8 C 0.127 3.873 9 O -0.206 6.206 10 C -0.052 4.052 11 C 0.054 3.946 12 H 0.126 0.874 13 O -0.341 6.341 14 C -0.099 4.099 15 N -0.312 5.312 16 C -0.062 4.062 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.246 4.246 27 C -0.035 4.035 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.219 0.781 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.157 0.843 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.156 0.844 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -31.797 4.920 -1.825 32.228 hybrid contribution -0.077 -1.876 0.713 2.009 sum -31.875 3.044 -1.112 32.039 Atomic orbital electron populations 1.23290 0.75847 1.03837 1.02697 1.86542 1.23671 1.32737 1.84448 1.21105 0.89061 0.81396 0.72488 1.90840 1.66852 1.35993 1.46418 1.18941 0.88979 0.94941 1.14965 1.21057 0.93396 0.96928 0.91651 1.20428 0.92529 0.97591 1.07817 1.19475 0.83104 0.94021 0.90733 1.86160 1.14709 1.33035 1.86684 1.23812 0.93833 0.85024 1.02565 1.21928 0.87809 0.95154 0.89701 0.87437 1.86682 1.86106 1.46573 1.14744 1.22504 0.90956 0.95263 1.01196 1.60478 1.03553 1.17186 1.49978 1.22196 0.96824 0.88745 0.98419 1.19077 0.87528 0.96943 0.97767 1.21194 0.91818 0.92778 1.50419 0.92729 1.25004 0.97913 0.96118 0.95294 1.69979 1.08827 1.24015 1.50251 0.86530 0.80086 0.83660 0.77667 1.19803 1.20939 1.21019 1.21300 0.95609 0.97125 1.10561 1.21238 0.92915 0.98096 0.91266 0.91771 0.91775 0.87905 0.83800 0.83863 0.90656 0.91052 0.78103 0.94790 0.90707 0.84329 0.96634 0.92320 0.95495 0.96732 0.92987 0.84418 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.57 101.05 1.07 1.26 16 2 O -0.36 -2.89 9.81 -40.62 -0.40 -3.29 16 3 C 0.51 5.00 7.89 34.49 0.27 5.27 16 4 O -0.51 -6.12 16.13 -19.27 -0.31 -6.43 16 5 C -0.18 -1.56 5.87 -104.97 -0.62 -2.18 16 6 C -0.01 -0.10 9.58 -39.20 -0.38 -0.48 16 7 C -0.17 -1.40 9.97 -39.50 -0.39 -1.79 16 8 C 0.17 1.57 6.70 -39.01 -0.26 1.31 16 9 O -0.29 -2.96 10.09 -23.62 -0.24 -3.20 16 10 C 0.02 0.19 4.37 37.16 0.16 0.35 16 11 C 0.11 1.22 3.43 -26.73 -0.09 1.12 16 12 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 13 O -0.54 -6.72 13.25 -40.07 -0.53 -7.25 16 14 C 0.03 0.38 5.32 -3.83 -0.02 0.36 16 15 N -0.68 -11.40 6.45 -113.78 -0.73 -12.14 16 16 C 0.07 1.33 5.62 -3.82 -0.02 1.31 16 17 C 0.02 0.62 5.23 -27.88 -0.15 0.48 16 18 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 22 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.23 -1.72 9.01 -39.50 -0.36 -2.08 16 27 C -0.02 -0.13 9.61 -39.20 -0.38 -0.50 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.14 1.08 7.64 -52.48 -0.40 0.68 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 34 H 0.07 0.47 7.64 -51.93 -0.40 0.07 16 35 H 0.37 3.40 9.04 45.56 0.41 3.81 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.34 5.58 8.73 -39.29 -0.34 5.23 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.14 0.80 6.27 -52.49 -0.33 0.47 16 45 H 0.14 0.81 7.60 -52.48 -0.40 0.41 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -34.22 387.73 -8.27 -42.49 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.05 Total: 2.56 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.57 Total: -9.00 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.00 Total: -38.15 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.48 Total: -20.17 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.22 -8.27 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566132216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.408 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds