Wall clock time and date at job start Tue Mar 31 2020 14:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34748 * 116.99848 * 2 1 4 4 O 1.21502 * 120.00290 * 0.02562 * 3 2 1 5 5 C 1.47467 * 119.99640 * 179.97438 * 3 2 1 6 6 C 1.39793 * 120.09276 * 179.97438 * 5 3 2 7 7 C 1.37681 * 119.91026 * 180.02562 * 6 5 3 8 8 C 1.39014 * 120.09048 * 0.02562 * 7 6 5 9 9 O 1.35692 * 119.90587 * 179.97438 * 8 7 6 10 10 C 1.42905 * 117.00127 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47192 * 54.99822 * 11 10 9 13 13 O 1.42906 * 109.47007 * 294.99658 * 11 10 9 14 14 C 1.53001 * 109.47242 * 175.00315 * 11 10 9 15 15 N 1.46894 * 109.47184 * 185.00015 * 14 11 10 16 16 C 1.46903 * 110.99927 * 179.97438 * 15 14 11 17 17 C 1.53005 * 109.47199 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47294 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99616 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00154 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00154 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00161 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47036 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46903 * 119.99815 * 22 20 18 25 25 H 1.48492 * 109.47146 * 239.99744 * 22 20 18 26 26 C 1.39012 * 120.18585 * 0.26847 * 8 7 6 27 27 C 1.37681 * 120.09498 * 359.44797 * 26 8 7 28 28 H 1.09004 * 109.47763 * 300.00177 * 1 2 3 29 29 H 1.09007 * 109.47217 * 59.99943 * 1 2 3 30 30 H 1.09002 * 109.47488 * 179.97438 * 1 2 3 31 31 H 1.08008 * 120.04492 * 0.02562 * 6 5 3 32 32 H 1.07998 * 119.95703 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47103 * 300.00462 * 10 9 8 34 34 H 1.09004 * 109.47054 * 59.99966 * 10 9 8 35 35 H 0.96697 * 113.99941 * 300.00517 * 13 11 10 36 36 H 1.09005 * 109.46584 * 305.00085 * 14 11 10 37 37 H 1.09000 * 109.47396 * 64.99207 * 14 11 10 38 38 H 1.00900 * 111.00111 * 56.04434 * 15 14 11 39 39 H 1.09002 * 109.47133 * 299.99675 * 16 15 14 40 40 H 1.09000 * 109.47317 * 60.00306 * 16 15 14 41 41 H 1.09002 * 109.46883 * 299.99914 * 17 16 15 42 42 H 1.08995 * 109.46984 * 59.99652 * 17 16 15 43 43 H 0.96995 * 120.00380 * 180.02562 * 21 20 18 44 44 H 1.07996 * 119.95495 * 179.72471 * 26 8 7 45 45 H 1.08004 * 120.05122 * 180.25004 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5363 1.2778 0.0006 6 6 4.1731 2.5223 0.0000 7 6 5.5482 2.5899 0.0000 8 6 6.3034 1.4228 0.0000 9 8 7.6585 1.4938 -0.0005 10 6 8.3730 0.2562 0.0001 11 6 9.8772 0.5358 0.0000 12 1 10.1267 1.1821 0.8415 13 8 10.2416 1.1820 -1.2214 14 6 10.6413 -0.7838 0.1263 15 7 12.0790 -0.5076 0.2466 16 6 12.8460 -1.7543 0.3707 17 6 14.3355 -1.4268 0.4930 18 6 15.1224 -2.7057 0.6196 19 1 14.6112 -3.6571 0.6131 20 6 16.4948 -2.6614 0.7438 21 7 17.1173 -1.5029 0.7512 22 14 17.4702 -4.2467 0.9015 23 1 16.5414 -5.4048 0.8666 24 1 18.4330 -4.3496 -0.2244 25 1 18.2114 -4.2459 2.1882 26 6 5.6743 0.1832 -0.0056 27 6 4.2996 0.1066 0.0003 28 1 -0.3635 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.5870 3.4295 -0.0004 32 1 6.0409 3.5509 -0.0008 33 1 8.1100 -0.3148 0.8905 34 1 8.1094 -0.3160 -0.8894 35 1 10.0477 0.6630 -2.0139 36 1 10.2986 -1.3186 1.0122 37 1 10.4613 -1.3940 -0.7587 38 1 12.2649 0.1097 1.0228 39 1 12.5186 -2.2955 1.2585 40 1 12.6814 -2.3716 -0.5125 41 1 14.6626 -0.8858 -0.3950 42 1 14.5005 -0.8093 1.3759 43 1 18.0829 -1.4717 0.8382 44 1 6.2647 -0.7211 -0.0101 45 1 3.8116 -0.8569 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566132216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:45 Heat of formation + Delta-G solvation = -178.611013 kcal Electronic energy + Delta-G solvation = -25393.730537 eV Core-core repulsion = 21375.465038 eV Total energy + Delta-G solvation = -4018.265499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73879 -41.02241 -39.21158 -38.09864 -37.42306 -36.71760 -34.90611 -32.65953 -32.13211 -31.64873 -30.30224 -28.51762 -27.07059 -25.29126 -24.58564 -23.67403 -22.73841 -22.19084 -21.80158 -19.46642 -18.86123 -18.53628 -18.24047 -17.80852 -17.46129 -17.37972 -16.70753 -16.43479 -16.28532 -15.87073 -15.57505 -15.50910 -15.09715 -14.79528 -14.51947 -14.46813 -14.37322 -14.09177 -13.95256 -13.61732 -13.46056 -13.33360 -12.98068 -12.87192 -12.82194 -12.42044 -12.20353 -12.04157 -11.95680 -11.83629 -11.72113 -11.69163 -11.48524 -11.30377 -10.88010 -10.56606 -10.18846 -9.42276 -9.24035 -8.19614 -6.31426 -0.35298 0.25522 1.41546 1.41922 1.43237 1.55039 1.68077 1.92987 2.41352 2.67877 3.14181 3.26234 3.53371 3.65166 3.72686 3.79893 3.86836 3.99073 4.05014 4.13173 4.29754 4.31038 4.32913 4.34281 4.39221 4.50723 4.55408 4.62658 4.70209 4.71149 4.93348 4.96433 5.02695 5.08966 5.15729 5.21975 5.33016 5.45648 5.53139 5.67763 5.79067 6.12971 6.24175 6.29813 6.50150 6.64140 6.86833 6.91476 7.38364 8.92753 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.001516 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.263036 B =18469.943853 C =19154.071214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.514 3.486 4 O -0.543 6.543 5 C -0.191 4.191 6 C -0.017 4.017 7 C -0.173 4.173 8 C 0.163 3.837 9 O -0.313 6.313 10 C 0.027 3.973 11 C 0.120 3.880 12 H 0.095 0.905 13 O -0.563 6.563 14 C 0.034 3.966 15 N -0.695 5.695 16 C 0.085 3.915 17 C 0.028 3.972 18 C -0.544 4.544 19 H 0.063 0.937 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.968 3.032 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.223 4.223 27 C -0.012 4.012 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.385 0.615 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.338 0.662 39 H 0.023 0.977 40 H 0.061 0.939 41 H -0.008 1.008 42 H -0.010 1.010 43 H 0.263 0.737 44 H 0.161 0.839 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.416 1.468 -1.538 33.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.361 3.639 4 O -0.435 6.435 5 C -0.192 4.192 6 C -0.035 4.035 7 C -0.191 4.191 8 C 0.116 3.884 9 O -0.226 6.226 10 C -0.048 4.048 11 C 0.060 3.940 12 H 0.113 0.887 13 O -0.369 6.369 14 C -0.095 4.095 15 N -0.326 5.326 16 C -0.043 4.043 17 C -0.009 4.009 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.792 3.208 23 H -0.183 1.183 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.241 4.241 27 C -0.030 4.030 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.155 0.845 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.010 0.990 42 H 0.008 0.992 43 H 0.072 0.928 44 H 0.179 0.821 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -33.066 2.479 -1.805 33.208 hybrid contribution 0.247 -1.081 0.691 1.306 sum -32.819 1.399 -1.114 32.868 Atomic orbital electron populations 1.23580 0.74329 1.05888 1.02586 1.86531 1.25197 1.31749 1.83939 1.21309 0.89435 0.81432 0.71703 1.90820 1.67553 1.37006 1.48098 1.19073 0.88760 0.95656 1.15704 1.21116 0.93459 0.97170 0.91728 1.20537 0.92576 0.98057 1.07973 1.19625 0.82767 0.94739 0.91277 1.86115 1.15312 1.34133 1.87020 1.23769 0.91676 0.84721 1.04615 1.21812 0.89576 0.93908 0.88745 0.88682 1.86644 1.86613 1.47760 1.15928 1.22568 0.87913 0.96466 1.02585 1.60363 1.06478 1.15598 1.50123 1.21779 0.93566 0.90156 0.98816 1.18951 0.91560 0.95535 0.94904 1.21658 0.92598 0.93819 1.50124 0.91869 1.25993 0.99266 0.99835 0.94753 1.70121 1.09275 1.26619 1.51264 0.85361 0.78420 0.79307 0.77706 1.18333 1.20500 1.20461 1.21523 0.95716 0.97337 1.09566 1.21447 0.92922 0.98379 0.90243 0.91934 0.91925 0.84778 0.83692 0.83439 0.88645 0.88860 0.76592 0.92886 0.89421 0.84462 0.95880 0.92018 0.98952 0.99173 0.92798 0.82144 0.82225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 113.37 1.20 1.46 16 2 O -0.36 -5.32 9.81 -56.59 -0.55 -5.87 16 3 C 0.51 9.75 7.89 70.25 0.55 10.30 16 4 O -0.54 -13.12 16.13 19.83 0.32 -12.80 16 5 C -0.19 -3.19 5.87 -20.09 -0.12 -3.31 16 6 C -0.02 -0.27 9.58 22.51 0.22 -0.06 16 7 C -0.17 -2.84 9.97 22.32 0.22 -2.61 16 8 C 0.16 2.68 6.70 22.64 0.15 2.83 16 9 O -0.31 -5.77 10.09 -85.48 -0.86 -6.63 16 10 C 0.03 0.37 4.37 71.98 0.31 0.69 16 11 C 0.12 2.34 3.43 30.59 0.10 2.44 16 12 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 13 O -0.56 -13.50 13.25 -144.35 -1.91 -15.41 16 14 C 0.03 0.74 5.32 86.30 0.46 1.20 16 15 N -0.69 -22.76 6.45 -513.88 -3.31 -26.07 16 16 C 0.09 3.39 5.62 86.30 0.49 3.87 16 17 C 0.03 1.48 5.23 29.85 0.16 1.63 16 18 C -0.54 -30.60 9.11 25.60 0.23 -30.36 16 19 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 20 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 21 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 22 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 C -0.22 -2.79 9.01 22.32 0.20 -2.58 16 27 C -0.01 -0.15 9.61 22.51 0.22 0.06 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.15 2.26 7.64 -2.91 -0.02 2.24 16 32 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.10 0.92 7.66 -2.39 -0.02 0.90 16 34 H 0.09 0.87 7.64 -2.38 -0.02 0.85 16 35 H 0.39 6.48 9.04 -74.06 -0.67 5.81 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.34 11.13 8.73 -89.69 -0.78 10.34 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.16 1.21 6.27 -2.91 -0.02 1.19 16 45 H 0.16 1.37 7.60 -2.91 -0.02 1.35 16 Total: -1.00 -74.90 387.73 0.40 -74.50 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.44 Total: 17.22 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 4.86 Total: -14.01 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -3.03 Total: -82.75 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -3.01 Total: -40.72 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -74.90 0.40 -74.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566132216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.109 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds