Wall clock time and date at job start Tue Mar 31 2020 14:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34749 * 116.99890 * 2 1 4 4 O 1.21503 * 119.99962 * 0.02562 * 3 2 1 5 5 C 1.47467 * 119.99698 * 180.02562 * 3 2 1 6 6 C 1.39796 * 120.09161 * 179.97438 * 5 3 2 7 7 C 1.37679 * 119.90724 * 180.02562 * 6 5 3 8 8 C 1.39012 * 120.08936 * 0.26257 * 7 6 5 9 9 O 1.35705 * 119.90240 * 179.73842 * 8 7 6 10 10 C 1.42898 * 116.99635 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46767 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47191 * 305.00164 * 11 10 9 13 13 O 1.42897 * 109.46918 * 65.00413 * 11 10 9 14 14 C 1.53000 * 109.46793 * 185.00158 * 11 10 9 15 15 N 1.46900 * 109.46929 * 180.02562 * 14 11 10 16 16 C 1.46902 * 111.00260 * 180.02562 * 15 14 11 17 17 C 1.52999 * 109.47143 * 179.97438 * 16 15 14 18 18 C 1.50708 * 109.46999 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99737 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99963 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00139 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99620 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47289 * 90.00358 * 22 20 18 24 24 H 1.48504 * 109.46806 * 210.00217 * 22 20 18 25 25 H 1.48499 * 109.47415 * 330.00035 * 22 20 18 26 26 C 1.39007 * 120.18977 * 359.48350 * 8 7 6 27 27 C 1.37680 * 120.09215 * 0.51564 * 26 8 7 28 28 H 1.08999 * 109.46853 * 59.99503 * 1 2 3 29 29 H 1.08994 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47117 * 300.00181 * 1 2 3 31 31 H 1.07999 * 120.04624 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.95102 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47793 * 300.00460 * 10 9 8 34 34 H 1.08997 * 109.46797 * 60.00935 * 10 9 8 35 35 H 0.96701 * 114.00281 * 60.00408 * 13 11 10 36 36 H 1.08997 * 109.47257 * 299.99965 * 14 11 10 37 37 H 1.09005 * 109.47201 * 60.00584 * 14 11 10 38 38 H 1.00903 * 111.00017 * 303.95246 * 15 14 11 39 39 H 1.09005 * 109.46562 * 299.99943 * 16 15 14 40 40 H 1.09000 * 109.47205 * 59.99908 * 16 15 14 41 41 H 1.08991 * 109.47311 * 299.99467 * 17 16 15 42 42 H 1.09000 * 109.47083 * 59.99909 * 17 16 15 43 43 H 0.97003 * 120.00219 * 179.97438 * 21 20 18 44 44 H 1.08002 * 119.95371 * 180.23428 * 26 8 7 45 45 H 1.08000 * 120.04875 * 179.72425 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5364 1.2778 -0.0006 6 6 4.1731 2.5223 -0.0011 7 6 5.5482 2.5899 -0.0022 8 6 6.3034 1.4228 -0.0082 9 8 7.6586 1.4938 -0.0146 10 6 8.3730 0.2563 -0.0201 11 6 9.8773 0.5359 -0.0262 12 1 10.1230 1.1834 -0.8679 13 8 10.2469 1.1804 1.1944 14 6 10.6406 -0.7835 -0.1578 15 7 12.0849 -0.5151 -0.1630 16 6 12.8516 -1.7618 -0.2889 17 6 14.3479 -1.4423 -0.2913 18 6 15.1345 -2.7214 -0.4198 19 1 14.6187 -3.6675 -0.4928 20 6 16.5125 -2.6837 -0.4451 21 7 17.1405 -1.5317 -0.3567 22 14 17.4873 -4.2692 -0.6051 23 1 17.7168 -4.5664 -2.0418 24 1 18.7941 -4.1183 0.0840 25 1 16.7262 -5.3831 0.0155 26 6 5.6744 0.1832 -0.0024 27 6 4.2997 0.1066 -0.0013 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.5871 3.4295 -0.0007 32 1 6.0409 3.5510 -0.0030 33 1 8.1139 -0.3168 0.8702 34 1 8.1054 -0.3137 -0.9098 35 1 10.0566 0.6603 1.9872 36 1 10.3949 -1.4310 0.6839 37 1 10.3587 -1.2751 -1.0889 38 1 12.3293 0.1347 -0.8952 39 1 12.6209 -2.4166 0.5515 40 1 12.5853 -2.2597 -1.2212 41 1 14.5783 -0.7878 -1.1318 42 1 14.6146 -0.9443 0.6408 43 1 18.1100 -1.5052 -0.3741 44 1 6.2648 -0.7211 -0.0033 45 1 3.8117 -0.8568 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566132219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:49 Heat of formation + Delta-G solvation = -153.769422 kcal Electronic energy + Delta-G solvation = -25396.558306 eV Core-core repulsion = 21379.370018 eV Total energy + Delta-G solvation = -4017.188287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.07710 -40.34456 -38.40640 -37.27262 -36.69621 -35.31673 -32.96423 -31.91252 -31.24455 -30.66705 -28.97303 -27.97696 -25.76009 -24.09363 -23.71582 -22.79484 -21.72392 -21.19911 -20.50038 -18.82690 -18.18213 -17.56278 -16.99729 -16.78972 -16.72751 -16.28591 -15.75203 -15.37840 -15.21844 -14.73523 -14.48872 -14.43753 -14.27566 -13.94467 -13.85664 -13.51996 -13.43894 -12.95445 -12.84223 -12.59959 -12.48247 -12.14273 -12.10283 -11.52658 -11.41564 -11.24846 -11.09951 -10.99085 -10.96357 -10.91905 -10.60757 -10.21245 -10.01520 -9.59997 -9.40949 -9.18184 -8.77488 -8.38182 -7.91556 -6.02158 -4.05384 0.30536 0.84185 2.12347 2.26202 2.60714 3.29877 3.30336 3.36359 3.39198 4.14191 4.22935 4.30400 4.33069 4.39975 4.45875 4.63756 4.65050 4.67112 4.73610 4.81579 4.89809 4.94465 5.05752 5.06396 5.15318 5.22901 5.33770 5.48742 5.56873 5.58730 5.76278 5.80544 5.86848 5.96773 6.13343 6.23434 6.29416 6.88056 6.90566 7.32447 7.35940 7.61854 7.67829 7.77244 7.88251 8.04279 8.39261 9.01806 9.58611 11.09155 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.034126 B = 0.001514 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.303260 B =18486.283130 C =19176.874586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.514 3.486 4 O -0.511 6.511 5 C -0.177 4.177 6 C -0.012 4.012 7 C -0.165 4.165 8 C 0.174 3.826 9 O -0.294 6.294 10 C 0.024 3.976 11 C 0.114 3.886 12 H 0.107 0.893 13 O -0.536 6.536 14 C 0.031 3.969 15 N -0.680 5.680 16 C 0.066 3.934 17 C 0.025 3.975 18 C -0.524 4.524 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.227 4.227 27 C -0.017 4.017 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.373 0.627 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.339 0.661 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.027 0.973 43 H 0.261 0.739 44 H 0.138 0.862 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.154 4.017 0.505 32.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.360 3.640 4 O -0.401 6.401 5 C -0.178 4.178 6 C -0.030 4.030 7 C -0.184 4.184 8 C 0.127 3.873 9 O -0.206 6.206 10 C -0.052 4.052 11 C 0.054 3.946 12 H 0.125 0.875 13 O -0.340 6.340 14 C -0.100 4.100 15 N -0.311 5.311 16 C -0.062 4.062 17 C -0.013 4.013 18 C -0.563 4.563 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.246 4.246 27 C -0.035 4.035 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.220 0.780 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.157 0.843 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.156 0.844 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -31.817 5.021 0.791 32.221 hybrid contribution -0.023 -1.845 -0.745 1.990 sum -31.841 3.176 0.046 31.999 Atomic orbital electron populations 1.23288 0.75846 1.03836 1.02697 1.86543 1.23672 1.32738 1.84448 1.21106 0.89062 0.81395 0.72487 1.90840 1.66848 1.35997 1.46421 1.18940 0.88977 0.94942 1.14967 1.21056 0.93397 0.96926 0.91657 1.20427 0.92530 0.97591 1.07817 1.19476 0.83106 0.94018 0.90731 1.86161 1.14705 1.33039 1.86686 1.23807 0.93836 0.85021 1.02556 1.21921 0.87819 0.95134 0.89743 0.87523 1.86672 1.86074 1.46485 1.14789 1.22498 0.91130 0.95444 1.00923 1.60471 1.01869 1.15158 1.53624 1.22197 0.96905 0.88909 0.98176 1.19069 0.87362 0.96892 0.97943 1.21160 0.91345 0.93099 1.50698 0.92789 1.25000 0.97914 0.96133 0.95254 1.69969 1.08473 1.24386 1.50232 0.86585 0.79522 0.83705 0.78107 1.20703 1.21146 1.19911 1.21300 0.95607 0.97128 1.10553 1.21236 0.92916 0.98096 0.91268 0.91774 0.87906 0.91773 0.83804 0.83866 0.91045 0.90672 0.78038 0.90781 0.94755 0.84295 0.92331 0.96653 0.96742 0.95498 0.92933 0.84412 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.57 101.05 1.07 1.26 16 2 O -0.36 -2.89 9.81 -40.63 -0.40 -3.29 16 3 C 0.51 5.00 7.89 34.49 0.27 5.27 16 4 O -0.51 -6.12 16.13 -19.27 -0.31 -6.43 16 5 C -0.18 -1.56 5.87 -104.98 -0.62 -2.18 16 6 C -0.01 -0.10 9.59 -39.20 -0.38 -0.48 16 7 C -0.17 -1.40 9.97 -39.50 -0.39 -1.79 16 8 C 0.17 1.57 6.70 -39.01 -0.26 1.31 16 9 O -0.29 -2.96 10.09 -23.68 -0.24 -3.20 16 10 C 0.02 0.19 4.37 37.16 0.16 0.36 16 11 C 0.11 1.21 3.45 -26.73 -0.09 1.12 16 12 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 13 O -0.54 -6.75 13.17 -40.09 -0.53 -7.28 16 14 C 0.03 0.37 5.35 -3.82 -0.02 0.35 16 15 N -0.68 -11.38 6.37 -113.78 -0.72 -12.10 16 16 C 0.07 1.33 5.62 -3.82 -0.02 1.31 16 17 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 18 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 22 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 C -0.23 -1.73 9.01 -39.50 -0.36 -2.08 16 27 C -0.02 -0.13 9.61 -39.21 -0.38 -0.50 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 1.08 7.64 -52.49 -0.40 0.68 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.07 0.47 7.64 -51.93 -0.40 0.08 16 34 H 0.08 0.50 7.66 -51.93 -0.40 0.11 16 35 H 0.37 3.50 9.05 45.56 0.41 3.91 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.34 5.61 8.73 -39.29 -0.34 5.27 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.14 0.80 6.28 -52.49 -0.33 0.47 16 45 H 0.14 0.81 7.60 -52.49 -0.40 0.41 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -34.11 387.62 -8.26 -42.37 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.05 Total: 2.69 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.57 Total: -9.02 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.01 Total: -38.11 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -1.48 Total: -20.20 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.11 -8.26 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566132219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.398 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds