Wall clock time and date at job start Tue Mar 31 2020 14:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34749 * 116.99890 * 2 1 4 4 O 1.21503 * 119.99962 * 0.02562 * 3 2 1 5 5 C 1.47467 * 119.99698 * 180.02562 * 3 2 1 6 6 C 1.39796 * 120.09161 * 179.97438 * 5 3 2 7 7 C 1.37679 * 119.90724 * 180.02562 * 6 5 3 8 8 C 1.39012 * 120.08936 * 0.26257 * 7 6 5 9 9 O 1.35705 * 119.90240 * 179.73842 * 8 7 6 10 10 C 1.42898 * 116.99635 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46767 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47191 * 305.00164 * 11 10 9 13 13 O 1.42897 * 109.46918 * 65.00413 * 11 10 9 14 14 C 1.53000 * 109.46793 * 185.00158 * 11 10 9 15 15 N 1.46900 * 109.46929 * 180.02562 * 14 11 10 16 16 C 1.46902 * 111.00260 * 180.02562 * 15 14 11 17 17 C 1.52999 * 109.47143 * 179.97438 * 16 15 14 18 18 C 1.50708 * 109.46999 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99737 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99963 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00139 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99620 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47289 * 90.00358 * 22 20 18 24 24 H 1.48504 * 109.46806 * 210.00217 * 22 20 18 25 25 H 1.48499 * 109.47415 * 330.00035 * 22 20 18 26 26 C 1.39007 * 120.18977 * 359.48350 * 8 7 6 27 27 C 1.37680 * 120.09215 * 0.51564 * 26 8 7 28 28 H 1.08999 * 109.46853 * 59.99503 * 1 2 3 29 29 H 1.08994 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47117 * 300.00181 * 1 2 3 31 31 H 1.07999 * 120.04624 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.95102 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47793 * 300.00460 * 10 9 8 34 34 H 1.08997 * 109.46797 * 60.00935 * 10 9 8 35 35 H 0.96701 * 114.00281 * 60.00408 * 13 11 10 36 36 H 1.08997 * 109.47257 * 299.99965 * 14 11 10 37 37 H 1.09005 * 109.47201 * 60.00584 * 14 11 10 38 38 H 1.00903 * 111.00017 * 303.95246 * 15 14 11 39 39 H 1.09005 * 109.46562 * 299.99943 * 16 15 14 40 40 H 1.09000 * 109.47205 * 59.99908 * 16 15 14 41 41 H 1.08991 * 109.47311 * 299.99467 * 17 16 15 42 42 H 1.09000 * 109.47083 * 59.99909 * 17 16 15 43 43 H 0.97003 * 120.00219 * 179.97438 * 21 20 18 44 44 H 1.08002 * 119.95371 * 180.23428 * 26 8 7 45 45 H 1.08000 * 120.04875 * 179.72425 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5364 1.2778 -0.0006 6 6 4.1731 2.5223 -0.0011 7 6 5.5482 2.5899 -0.0022 8 6 6.3034 1.4228 -0.0082 9 8 7.6586 1.4938 -0.0146 10 6 8.3730 0.2563 -0.0201 11 6 9.8773 0.5359 -0.0262 12 1 10.1230 1.1834 -0.8679 13 8 10.2469 1.1804 1.1944 14 6 10.6406 -0.7835 -0.1578 15 7 12.0849 -0.5151 -0.1630 16 6 12.8516 -1.7618 -0.2889 17 6 14.3479 -1.4423 -0.2913 18 6 15.1345 -2.7214 -0.4198 19 1 14.6187 -3.6675 -0.4928 20 6 16.5125 -2.6837 -0.4451 21 7 17.1405 -1.5317 -0.3567 22 14 17.4873 -4.2692 -0.6051 23 1 17.7168 -4.5664 -2.0418 24 1 18.7941 -4.1183 0.0840 25 1 16.7262 -5.3831 0.0155 26 6 5.6744 0.1832 -0.0024 27 6 4.2997 0.1066 -0.0013 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.5871 3.4295 -0.0007 32 1 6.0409 3.5510 -0.0030 33 1 8.1139 -0.3168 0.8702 34 1 8.1054 -0.3137 -0.9098 35 1 10.0566 0.6603 1.9872 36 1 10.3949 -1.4310 0.6839 37 1 10.3587 -1.2751 -1.0889 38 1 12.3293 0.1347 -0.8952 39 1 12.6209 -2.4166 0.5515 40 1 12.5853 -2.2597 -1.2212 41 1 14.5783 -0.7878 -1.1318 42 1 14.6146 -0.9443 0.6408 43 1 18.1100 -1.5052 -0.3741 44 1 6.2648 -0.7211 -0.0033 45 1 3.8117 -0.8568 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566132219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:48 Heat of formation + Delta-G solvation = -178.326113 kcal Electronic energy + Delta-G solvation = -25397.623164 eV Core-core repulsion = 21379.370018 eV Total energy + Delta-G solvation = -4018.253145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73795 -41.02032 -39.20824 -38.09813 -37.42237 -36.69999 -34.89710 -32.65677 -32.12899 -31.64780 -30.30666 -28.51802 -27.06786 -25.29079 -24.58532 -23.66605 -22.72256 -22.18881 -21.80050 -19.46470 -18.85949 -18.53200 -18.23024 -17.80676 -17.46222 -17.38178 -16.71297 -16.43850 -16.28044 -15.87352 -15.53240 -15.52748 -15.10212 -14.79106 -14.51769 -14.46689 -14.36267 -14.08686 -13.94089 -13.62542 -13.46369 -13.33192 -12.98170 -12.88006 -12.80521 -12.43384 -12.18615 -12.03978 -11.94685 -11.83625 -11.71331 -11.69032 -11.47777 -11.31935 -10.87438 -10.55749 -10.18803 -9.42221 -9.23891 -8.19304 -6.31219 -0.35246 0.25579 1.41601 1.43114 1.43281 1.54170 1.68104 1.93137 2.41561 2.67940 3.14397 3.25913 3.54354 3.65872 3.72779 3.80135 3.86628 3.99560 4.05355 4.13281 4.29790 4.30892 4.32952 4.35163 4.39322 4.50843 4.55674 4.62669 4.70250 4.71590 4.93398 4.96537 5.02728 5.09187 5.15793 5.22013 5.33055 5.45573 5.53207 5.68007 5.79121 6.13107 6.24226 6.30009 6.50228 6.64154 6.86817 6.91826 7.38502 8.92816 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.034126 B = 0.001514 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.303260 B =18486.283130 C =19176.874586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.514 3.486 4 O -0.543 6.543 5 C -0.191 4.191 6 C -0.017 4.017 7 C -0.173 4.173 8 C 0.163 3.837 9 O -0.313 6.313 10 C 0.028 3.972 11 C 0.119 3.881 12 H 0.096 0.904 13 O -0.562 6.562 14 C 0.034 3.966 15 N -0.693 5.693 16 C 0.085 3.915 17 C 0.029 3.971 18 C -0.545 4.545 19 H 0.063 0.937 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.967 3.033 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.261 1.261 26 C -0.223 4.223 27 C -0.012 4.012 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.385 0.615 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.338 0.662 39 H 0.062 0.938 40 H 0.022 0.978 41 H -0.011 1.011 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.161 0.839 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.389 1.610 0.358 33.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.361 3.639 4 O -0.435 6.435 5 C -0.192 4.192 6 C -0.035 4.035 7 C -0.191 4.191 8 C 0.116 3.884 9 O -0.226 6.226 10 C -0.048 4.048 11 C 0.059 3.941 12 H 0.114 0.886 13 O -0.368 6.368 14 C -0.096 4.096 15 N -0.324 5.324 16 C -0.043 4.043 17 C -0.009 4.009 18 C -0.583 4.583 19 H 0.081 0.919 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.186 1.186 26 C -0.241 4.241 27 C -0.030 4.030 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.234 0.766 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.155 0.845 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.008 0.992 42 H 0.011 0.989 43 H 0.072 0.928 44 H 0.179 0.821 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -33.086 2.593 0.649 33.193 hybrid contribution 0.299 -1.054 -0.687 1.294 sum -32.786 1.538 -0.039 32.822 Atomic orbital electron populations 1.23579 0.74326 1.05885 1.02587 1.86533 1.25199 1.31751 1.83939 1.21310 0.89435 0.81432 0.71703 1.90820 1.67549 1.37009 1.48098 1.19072 0.88759 0.95657 1.15704 1.21115 0.93461 0.97168 0.91732 1.20537 0.92576 0.98058 1.07967 1.19626 0.82771 0.94735 0.91276 1.86117 1.15307 1.34129 1.87022 1.23763 0.91697 0.84720 1.04590 1.21816 0.89568 0.93907 0.88783 0.88639 1.86636 1.86585 1.47656 1.15962 1.22563 0.88013 0.96653 1.02369 1.60355 1.04679 1.13541 1.53832 1.21781 0.93588 0.90334 0.98622 1.18942 0.91469 0.95493 0.94989 1.21635 0.92139 0.94164 1.50403 0.91877 1.25991 0.99266 0.99857 0.94701 1.70115 1.08868 1.26982 1.51273 0.85415 0.77710 0.79246 0.78453 1.19761 1.20903 1.18550 1.21523 0.95716 0.97340 1.09562 1.21444 0.92923 0.98379 0.90248 0.91928 0.84780 0.91930 0.83692 0.83434 0.88943 0.88606 0.76629 0.89429 0.92948 0.84492 0.91989 0.95939 0.99224 0.98929 0.92797 0.82148 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 113.37 1.20 1.47 16 2 O -0.36 -5.33 9.81 -56.60 -0.56 -5.88 16 3 C 0.51 9.75 7.89 70.25 0.55 10.31 16 4 O -0.54 -13.12 16.13 19.83 0.32 -12.80 16 5 C -0.19 -3.19 5.87 -20.09 -0.12 -3.31 16 6 C -0.02 -0.27 9.59 22.51 0.22 -0.06 16 7 C -0.17 -2.83 9.97 22.32 0.22 -2.61 16 8 C 0.16 2.68 6.70 22.64 0.15 2.83 16 9 O -0.31 -5.77 10.09 -85.62 -0.86 -6.63 16 10 C 0.03 0.37 4.37 71.98 0.31 0.69 16 11 C 0.12 2.32 3.45 30.60 0.11 2.43 16 12 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 13 O -0.56 -13.58 13.17 -144.34 -1.90 -15.48 16 14 C 0.03 0.73 5.35 86.30 0.46 1.19 16 15 N -0.69 -22.68 6.37 -513.88 -3.27 -25.95 16 16 C 0.09 3.38 5.62 86.30 0.49 3.87 16 17 C 0.03 1.50 5.23 29.85 0.16 1.66 16 18 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 19 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 21 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 22 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 26 C -0.22 -2.79 9.01 22.32 0.20 -2.59 16 27 C -0.01 -0.15 9.61 22.51 0.22 0.06 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.15 2.26 7.64 -2.91 -0.02 2.24 16 32 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.09 0.88 7.64 -2.39 -0.02 0.86 16 34 H 0.10 0.92 7.66 -2.39 -0.02 0.90 16 35 H 0.38 6.70 9.05 -74.06 -0.67 6.03 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.34 11.18 8.73 -89.69 -0.78 10.39 16 39 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.16 1.22 6.28 -2.91 -0.02 1.20 16 45 H 0.16 1.37 7.60 -2.91 -0.02 1.35 16 Total: -1.00 -74.66 387.62 0.46 -74.20 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.44 Total: 17.56 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.86 Total: -14.07 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.99 Total: -82.62 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -3.00 Total: -40.80 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.66 0.46 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566132219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.125 kcal (2) G-P(sol) polarization free energy of solvation -74.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds