Wall clock time and date at job start Tue Mar 31 2020 14:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00266 * 2 1 4 4 O 1.20820 * 119.99792 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00166 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47155 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.46858 * 305.00177 * 6 5 3 8 8 C 1.52996 * 109.47162 * 64.99809 * 6 5 3 9 9 C 1.52995 * 109.46959 * 185.00251 * 6 5 3 10 10 C 1.50705 * 109.47209 * 175.00134 * 9 6 5 11 11 O 1.21293 * 119.99570 * 359.97438 * 10 9 6 12 12 N 1.34773 * 120.00446 * 179.97438 * 10 9 6 13 13 C 1.39474 * 120.00130 * 179.97438 * 12 10 9 14 14 C 1.36105 * 126.21666 * 359.97438 * 13 12 10 15 15 C 1.39753 * 107.82545 * 180.02562 * 14 13 12 16 16 C 1.50707 * 125.83557 * 180.02562 * 15 14 13 17 17 N 1.30851 * 108.32779 * 359.75576 * 15 14 13 18 18 N 1.35261 * 126.20928 * 179.97438 * 13 12 10 19 19 C 1.46491 * 126.05417 * 359.95919 * 18 13 12 20 20 C 1.50702 * 109.46957 * 89.99946 * 19 18 13 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99985 * 180.27663 * 22 20 19 24 24 Si 1.86800 * 119.99777 * 0.28166 * 22 20 19 25 25 H 1.48498 * 109.47109 * 89.99834 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99405 * 24 22 20 28 28 H 1.09007 * 109.46748 * 60.00337 * 1 2 3 29 29 H 1.08994 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47351 * 300.00174 * 1 2 3 31 31 H 1.09002 * 109.47321 * 59.99751 * 5 3 2 32 32 H 1.08999 * 109.46693 * 299.99866 * 5 3 2 33 33 H 1.09002 * 109.46861 * 180.02562 * 8 6 5 34 34 H 1.09000 * 109.47018 * 299.99985 * 8 6 5 35 35 H 1.08995 * 109.47457 * 60.00174 * 8 6 5 36 36 H 1.08994 * 109.47763 * 55.00010 * 9 6 5 37 37 H 1.09006 * 109.47229 * 294.99262 * 9 6 5 38 38 H 0.97007 * 119.99513 * 359.97438 * 12 10 9 39 39 H 1.07997 * 126.08664 * 359.96300 * 14 13 12 40 40 H 1.09004 * 109.46881 * 90.00440 * 16 15 14 41 41 H 1.09003 * 109.47025 * 209.99602 * 16 15 14 42 42 H 1.08998 * 109.47195 * 329.99863 * 16 15 14 43 43 H 1.09004 * 109.47166 * 330.00212 * 19 18 13 44 44 H 1.08994 * 109.47507 * 209.99918 * 19 18 13 45 45 H 0.96996 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 1 3.5383 3.2570 -0.8426 8 6 3.5596 3.4048 1.3065 9 6 5.5229 2.8234 -0.1254 10 6 5.9402 4.2662 -0.2496 11 8 5.1021 5.1429 -0.2395 12 7 7.2446 4.5823 -0.3720 13 6 7.6308 5.9175 -0.4875 14 6 6.8017 6.9969 -0.4920 15 6 7.5911 8.1422 -0.6274 16 6 7.0859 9.5611 -0.6785 17 7 8.8444 7.7722 -0.6963 18 7 8.8973 6.3748 -0.6154 19 6 10.1102 5.5544 -0.6564 20 6 10.4163 5.1816 -2.0842 21 1 9.7721 5.5222 -2.8813 22 6 11.5225 4.4109 -2.3735 23 7 11.7927 4.0901 -3.6199 24 14 12.6371 3.8223 -0.9948 25 1 12.1587 2.5068 -0.4989 26 1 14.0248 3.6840 -1.5052 27 1 12.6140 4.8081 0.1155 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9565 0.7804 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 3.8684 4.4502 1.3057 34 1 2.4748 3.3467 1.3956 35 1 4.0215 2.8898 2.1489 36 1 5.8446 2.2747 -1.0104 37 1 5.9842 2.3869 0.7605 38 1 7.9149 3.8811 -0.3796 39 1 5.7254 6.9726 -0.4072 40 1 7.0445 9.9686 0.3316 41 1 7.7596 10.1650 -1.2865 42 1 6.0884 9.5760 -1.1176 43 1 9.9563 4.6488 -0.0695 44 1 10.9450 6.1189 -0.2414 45 1 12.5706 3.5476 -3.8233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570881140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:18 Heat of formation + Delta-G solvation = -52.473929 kcal Electronic energy + Delta-G solvation = -27112.716885 eV Core-core repulsion = 23132.213851 eV Total energy + Delta-G solvation = -3980.503034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02274 -40.75111 -39.41286 -37.11495 -35.51284 -34.70863 -33.75229 -32.17504 -30.15342 -29.46516 -28.72750 -27.36658 -27.17746 -26.30682 -22.94870 -22.32080 -21.28321 -20.13461 -19.64946 -19.28859 -17.85831 -17.24315 -17.18540 -16.81737 -16.65014 -16.29671 -15.73963 -15.04483 -14.72222 -14.53258 -14.17581 -13.96913 -13.84744 -13.49428 -13.16301 -12.98036 -12.71395 -12.65203 -12.54179 -12.39538 -12.30998 -12.16268 -11.89496 -11.80841 -11.50248 -11.27910 -11.09687 -11.07250 -10.92055 -10.83996 -10.53047 -10.44751 -10.22086 -9.89692 -9.77299 -9.46546 -8.88229 -7.95519 -7.48035 -6.35223 -4.39659 1.95644 2.22822 2.37497 2.79960 3.04555 3.07497 3.15612 3.16828 3.56566 3.69607 4.12413 4.30070 4.52879 4.62078 4.70702 4.77724 4.85363 4.91083 5.04045 5.11636 5.19233 5.23658 5.30635 5.33028 5.53997 5.61602 5.66633 5.93364 6.00532 6.03388 6.11464 6.17185 6.20629 6.23073 6.32309 6.35612 6.47755 6.65549 6.75079 7.18738 7.45157 7.49651 7.56406 7.77454 8.17649 8.32032 8.57473 8.71466 9.19427 10.77038 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.002981 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.438412 B = 9389.162333 C =11170.381843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.498 6.498 5 C -0.112 4.112 6 C -0.064 4.064 7 H 0.092 0.908 8 C -0.162 4.162 9 C -0.134 4.134 10 C 0.520 3.480 11 O -0.508 6.508 12 N -0.642 5.642 13 C 0.305 3.695 14 C -0.293 4.293 15 C 0.054 3.946 16 C -0.063 4.063 17 N -0.284 5.284 18 N -0.345 5.345 19 C 0.230 3.770 20 C -0.545 4.545 21 H 0.081 0.919 22 C 0.080 3.920 23 N -0.883 5.883 24 Si 0.872 3.128 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.415 0.585 39 H 0.163 0.837 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.054 0.946 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.135 -8.823 9.828 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.385 6.385 5 C -0.149 4.149 6 C -0.083 4.083 7 H 0.110 0.890 8 C -0.219 4.219 9 C -0.174 4.174 10 C 0.307 3.693 11 O -0.381 6.381 12 N -0.289 5.289 13 C 0.083 3.917 14 C -0.325 4.325 15 C -0.111 4.111 16 C -0.122 4.122 17 N -0.109 5.109 18 N -0.130 5.130 19 C 0.111 3.889 20 C -0.583 4.583 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.520 5.520 24 Si 0.698 3.302 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.251 0.749 39 H 0.181 0.819 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.527 -7.752 9.596 20.623 hybrid contribution 0.293 -1.255 0.482 1.376 sum -16.234 -9.007 10.078 21.124 Atomic orbital electron populations 1.23251 0.76390 1.03596 1.02612 1.86508 1.23445 1.33781 1.84307 1.23804 0.92302 0.81245 0.72403 1.90681 1.67202 1.36086 1.44482 1.21523 0.87515 0.99766 1.06115 1.20718 0.93008 0.92759 1.01829 0.88958 1.22102 1.02444 1.02648 0.94659 1.21702 0.97296 0.93180 1.05213 1.20548 0.80962 0.91738 0.76093 1.90628 1.50311 1.49669 1.47538 1.42864 1.09125 1.05458 1.71491 1.17942 0.86738 0.84780 1.02243 1.21290 1.00847 0.88902 1.21414 1.22060 0.91116 0.96613 1.01286 1.20034 1.00655 0.89397 1.02066 1.77364 1.19341 0.88447 1.25735 1.48887 1.04561 1.04270 1.55278 1.19920 0.80929 0.88640 0.99423 1.21199 1.12506 1.33861 0.90762 0.90079 1.24829 0.96725 0.95238 0.95683 1.69872 1.27675 1.36599 1.17820 0.86919 0.81065 0.79708 0.82553 1.19643 1.20366 1.18769 0.91853 0.88194 0.91919 0.87289 0.87395 0.90193 0.91352 0.93627 0.87856 0.88127 0.74904 0.81923 0.91342 0.91418 0.91017 0.94770 0.92791 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.20 10.56 -39.25 -0.41 -3.61 16 3 C 0.46 4.52 7.68 36.01 0.28 4.79 16 4 O -0.50 -6.41 13.72 -18.75 -0.26 -6.66 16 5 C -0.11 -0.81 5.29 -27.88 -0.15 -0.96 16 6 C -0.06 -0.64 1.68 -90.62 -0.15 -0.79 16 7 H 0.09 1.13 7.77 -51.93 -0.40 0.73 16 8 C -0.16 -1.80 8.68 37.16 0.32 -1.47 16 9 C -0.13 -1.25 5.17 -27.88 -0.14 -1.39 16 10 C 0.52 7.49 7.51 -10.98 -0.08 7.41 16 11 O -0.51 -8.71 11.09 5.55 0.06 -8.64 16 12 N -0.64 -10.52 5.42 -11.46 -0.06 -10.59 16 13 C 0.30 6.26 7.66 -153.16 -1.17 5.08 16 14 C -0.29 -5.92 9.58 -39.78 -0.38 -6.30 16 15 C 0.05 1.09 7.21 -82.44 -0.59 0.49 16 16 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 17 N -0.28 -6.53 12.57 33.65 0.42 -6.11 16 18 N -0.34 -7.87 3.60 -61.58 -0.22 -8.09 16 19 C 0.23 5.34 5.07 -5.20 -0.03 5.31 16 20 C -0.55 -14.75 9.94 -34.44 -0.34 -15.09 16 21 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 22 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 23 N -0.88 -25.46 13.96 55.43 0.77 -24.69 16 24 Si 0.87 19.25 27.47 -169.99 -4.67 14.58 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 28 H 0.06 0.42 8.13 -51.92 -0.42 0.00 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 34 H 0.07 0.83 5.96 -51.93 -0.31 0.52 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.41 6.03 7.97 -40.82 -0.33 5.71 16 39 H 0.16 3.20 5.83 -52.49 -0.31 2.89 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 44 H 0.05 1.28 7.19 -51.93 -0.37 0.91 16 45 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 374.59 15.07 5.64 5.64 Total: -1.00 -34.93 374.59 -6.45 -41.38 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.63 Total: 6.92 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.10 Total: -0.14 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.91 Total: -49.48 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.61 Total: -18.92 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.67 Total: 14.58 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.93 -6.45 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570881140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.097 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds