Wall clock time and date at job start Tue Mar 31 2020 14:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00266 * 2 1 4 4 O 1.20820 * 119.99792 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00166 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47155 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.46858 * 305.00177 * 6 5 3 8 8 C 1.52996 * 109.47162 * 64.99809 * 6 5 3 9 9 C 1.52995 * 109.46959 * 185.00251 * 6 5 3 10 10 C 1.50705 * 109.47209 * 175.00134 * 9 6 5 11 11 O 1.21293 * 119.99570 * 359.97438 * 10 9 6 12 12 N 1.34773 * 120.00446 * 179.97438 * 10 9 6 13 13 C 1.39474 * 120.00130 * 179.97438 * 12 10 9 14 14 C 1.36105 * 126.21666 * 359.97438 * 13 12 10 15 15 C 1.39753 * 107.82545 * 180.02562 * 14 13 12 16 16 C 1.50707 * 125.83557 * 180.02562 * 15 14 13 17 17 N 1.30851 * 108.32779 * 359.75576 * 15 14 13 18 18 N 1.35261 * 126.20928 * 179.97438 * 13 12 10 19 19 C 1.46491 * 126.05417 * 359.95919 * 18 13 12 20 20 C 1.50702 * 109.46957 * 89.99946 * 19 18 13 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99985 * 180.27663 * 22 20 19 24 24 Si 1.86800 * 119.99777 * 0.28166 * 22 20 19 25 25 H 1.48498 * 109.47109 * 89.99834 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99405 * 24 22 20 28 28 H 1.09007 * 109.46748 * 60.00337 * 1 2 3 29 29 H 1.08994 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47351 * 300.00174 * 1 2 3 31 31 H 1.09002 * 109.47321 * 59.99751 * 5 3 2 32 32 H 1.08999 * 109.46693 * 299.99866 * 5 3 2 33 33 H 1.09002 * 109.46861 * 180.02562 * 8 6 5 34 34 H 1.09000 * 109.47018 * 299.99985 * 8 6 5 35 35 H 1.08995 * 109.47457 * 60.00174 * 8 6 5 36 36 H 1.08994 * 109.47763 * 55.00010 * 9 6 5 37 37 H 1.09006 * 109.47229 * 294.99262 * 9 6 5 38 38 H 0.97007 * 119.99513 * 359.97438 * 12 10 9 39 39 H 1.07997 * 126.08664 * 359.96300 * 14 13 12 40 40 H 1.09004 * 109.46881 * 90.00440 * 16 15 14 41 41 H 1.09003 * 109.47025 * 209.99602 * 16 15 14 42 42 H 1.08998 * 109.47195 * 329.99863 * 16 15 14 43 43 H 1.09004 * 109.47166 * 330.00212 * 19 18 13 44 44 H 1.08994 * 109.47507 * 209.99918 * 19 18 13 45 45 H 0.96996 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 1 3.5383 3.2570 -0.8426 8 6 3.5596 3.4048 1.3065 9 6 5.5229 2.8234 -0.1254 10 6 5.9402 4.2662 -0.2496 11 8 5.1021 5.1429 -0.2395 12 7 7.2446 4.5823 -0.3720 13 6 7.6308 5.9175 -0.4875 14 6 6.8017 6.9969 -0.4920 15 6 7.5911 8.1422 -0.6274 16 6 7.0859 9.5611 -0.6785 17 7 8.8444 7.7722 -0.6963 18 7 8.8973 6.3748 -0.6154 19 6 10.1102 5.5544 -0.6564 20 6 10.4163 5.1816 -2.0842 21 1 9.7721 5.5222 -2.8813 22 6 11.5225 4.4109 -2.3735 23 7 11.7927 4.0901 -3.6199 24 14 12.6371 3.8223 -0.9948 25 1 12.1587 2.5068 -0.4989 26 1 14.0248 3.6840 -1.5052 27 1 12.6140 4.8081 0.1155 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9565 0.7804 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 3.8684 4.4502 1.3057 34 1 2.4748 3.3467 1.3956 35 1 4.0215 2.8898 2.1489 36 1 5.8446 2.2747 -1.0104 37 1 5.9842 2.3869 0.7605 38 1 7.9149 3.8811 -0.3796 39 1 5.7254 6.9726 -0.4072 40 1 7.0445 9.9686 0.3316 41 1 7.7596 10.1650 -1.2865 42 1 6.0884 9.5760 -1.1176 43 1 9.9563 4.6488 -0.0695 44 1 10.9450 6.1189 -0.2414 45 1 12.5706 3.5476 -3.8233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570881140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:17 Heat of formation + Delta-G solvation = -75.928418 kcal Electronic energy + Delta-G solvation = -27113.733948 eV Core-core repulsion = 23132.213851 eV Total energy + Delta-G solvation = -3981.520097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44636 -41.57040 -40.65519 -37.86119 -36.47575 -36.08602 -35.48224 -33.97329 -31.34069 -30.76131 -29.85082 -28.46544 -27.99359 -27.79676 -24.47295 -23.64515 -22.34366 -21.29885 -20.88538 -20.51156 -19.24999 -18.71786 -18.33500 -17.92100 -17.53053 -17.29647 -16.84610 -16.53467 -16.09197 -15.83443 -15.46231 -15.05862 -14.85497 -14.77114 -14.37905 -14.26531 -14.17584 -13.84266 -13.76764 -13.49456 -13.24305 -13.13447 -12.99766 -12.91010 -12.83662 -12.52552 -12.31180 -12.12288 -12.02359 -11.84211 -11.78457 -11.67417 -11.64253 -11.44986 -11.29092 -10.89930 -10.74755 -9.60295 -9.04957 -8.41122 -6.53991 0.81614 1.24332 1.31518 1.34504 1.41750 1.49743 1.66803 1.82508 2.07834 2.26478 2.28130 2.90398 3.47313 3.73900 3.78925 3.90163 3.97520 4.18062 4.31157 4.33565 4.36209 4.46875 4.56640 4.57556 4.59949 4.69837 4.70768 4.73577 4.75759 4.87283 4.90004 4.94536 4.96044 5.11983 5.14721 5.20296 5.23206 5.37156 5.47214 5.57395 5.87956 6.00182 6.25931 6.38061 6.50705 6.79634 6.96871 7.08575 7.12101 8.75402 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.002981 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.438412 B = 9389.162333 C =11170.381843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.457 3.543 4 O -0.538 6.538 5 C -0.104 4.104 6 C -0.061 4.061 7 H 0.060 0.940 8 C -0.157 4.157 9 C -0.122 4.122 10 C 0.514 3.486 11 O -0.538 6.538 12 N -0.641 5.641 13 C 0.305 3.695 14 C -0.310 4.310 15 C 0.058 3.942 16 C -0.061 4.061 17 N -0.331 5.331 18 N -0.367 5.367 19 C 0.239 3.761 20 C -0.553 4.553 21 H 0.020 0.980 22 C 0.025 3.975 23 N -0.935 5.935 24 Si 0.951 3.049 25 H -0.240 1.240 26 H -0.282 1.282 27 H -0.249 1.249 28 H 0.057 0.943 29 H 0.130 0.870 30 H 0.059 0.941 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.424 0.576 39 H 0.166 0.834 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.828 -11.333 12.079 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.428 6.428 5 C -0.141 4.141 6 C -0.080 4.080 7 H 0.079 0.921 8 C -0.214 4.214 9 C -0.161 4.161 10 C 0.304 3.696 11 O -0.413 6.413 12 N -0.289 5.289 13 C 0.082 3.918 14 C -0.342 4.342 15 C -0.107 4.107 16 C -0.120 4.120 17 N -0.156 5.156 18 N -0.153 5.153 19 C 0.119 3.881 20 C -0.591 4.591 21 H 0.039 0.961 22 C -0.176 4.176 23 N -0.573 5.573 24 Si 0.771 3.229 25 H -0.164 1.164 26 H -0.207 1.207 27 H -0.173 1.173 28 H 0.075 0.925 29 H 0.148 0.852 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.262 0.738 39 H 0.183 0.817 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.254 -10.294 11.854 22.598 hybrid contribution 0.015 -0.422 -0.309 0.523 sum -16.238 -10.716 11.545 22.623 Atomic orbital electron populations 1.23481 0.75340 1.05468 1.02210 1.86503 1.24575 1.33162 1.83883 1.24367 0.93363 0.80900 0.71192 1.90677 1.68262 1.37389 1.46491 1.21564 0.85692 0.97932 1.08927 1.20612 0.93259 0.94378 0.99780 0.92144 1.22023 1.01579 1.01334 0.96480 1.21806 0.96721 0.89377 1.08227 1.21661 0.79734 0.93752 0.74447 1.90620 1.50887 1.51250 1.48569 1.43114 1.10249 1.03949 1.71625 1.18346 0.85994 0.86801 1.00660 1.21480 1.00987 0.89300 1.22458 1.22875 0.90261 0.98779 0.98779 1.20221 1.01430 0.86505 1.03820 1.77296 1.21074 0.89022 1.28188 1.48824 1.05055 1.04447 1.56934 1.19754 0.81446 0.89868 0.97053 1.21211 1.12161 1.34246 0.91504 0.96122 1.25843 0.98157 0.94872 0.98697 1.70038 1.28721 1.37747 1.20786 0.85687 0.77845 0.80594 0.78748 1.16358 1.20722 1.17255 0.92462 0.85191 0.92220 0.84620 0.84143 0.93151 0.92957 0.91202 0.85176 0.84258 0.73827 0.81658 0.88978 0.91006 0.89138 0.91199 0.93244 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -5.72 10.56 -51.38 -0.54 -6.26 16 3 C 0.46 8.31 7.68 71.24 0.55 8.86 16 4 O -0.54 -13.96 13.72 21.98 0.30 -13.66 16 5 C -0.10 -1.17 5.29 29.85 0.16 -1.01 16 6 C -0.06 -1.10 1.68 -10.80 -0.02 -1.12 16 7 H 0.06 1.48 7.77 -2.38 -0.02 1.46 16 8 C -0.16 -3.35 8.68 71.98 0.62 -2.73 16 9 C -0.12 -1.88 5.17 29.85 0.15 -1.72 16 10 C 0.51 14.23 7.51 87.66 0.66 14.89 16 11 O -0.54 -18.62 11.09 -3.07 -0.03 -18.66 16 12 N -0.64 -20.34 5.42 -308.56 -1.67 -22.01 16 13 C 0.30 12.56 7.66 131.32 1.01 13.56 16 14 C -0.31 -12.73 9.58 22.14 0.21 -12.52 16 15 C 0.06 2.36 7.21 43.07 0.31 2.67 16 16 C -0.06 -1.77 10.44 71.24 0.74 -1.03 16 17 N -0.33 -15.55 12.57 -47.44 -0.60 -16.14 16 18 N -0.37 -16.96 3.60 -348.74 -1.26 -18.22 16 19 C 0.24 10.96 5.07 85.64 0.43 11.40 16 20 C -0.55 -30.69 9.94 25.60 0.25 -30.43 16 21 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 22 C 0.02 1.32 5.47 84.66 0.46 1.79 16 23 N -0.94 -55.07 13.96 21.45 0.30 -54.77 16 24 Si 0.95 38.51 27.47 68.60 1.88 40.40 16 25 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 26 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.25 -9.47 6.54 99.48 0.65 -8.82 16 28 H 0.06 0.73 8.13 -2.38 -0.02 0.71 16 29 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 1.37 5.95 -2.39 -0.01 1.36 16 34 H 0.05 1.28 5.96 -2.39 -0.01 1.27 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.42 11.48 7.97 -92.70 -0.74 10.75 16 39 H 0.17 6.64 5.83 -2.91 -0.02 6.62 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 43 H 0.07 2.69 6.93 -2.38 -0.02 2.67 16 44 H 0.05 2.30 7.19 -2.39 -0.02 2.29 16 45 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -82.44 374.59 5.35 -77.09 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.22 Total: 28.09 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.74 Total: 4.14 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -3.22 Total: -111.14 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.28 Total: -38.57 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.88 Total: 40.40 kcal Total: -82.44 5.35 -77.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570881140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.159 kcal (2) G-P(sol) polarization free energy of solvation -82.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds