Wall clock time and date at job start Tue Mar 31 2020 14:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00449 * 2 1 4 4 C 1.52998 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47224 * 64.99643 * 4 3 2 6 6 C 1.37093 * 120.00330 * 270.00059 * 5 4 3 7 7 H 1.07996 * 120.00278 * 139.97668 * 6 5 4 8 8 C 1.38952 * 120.00033 * 319.97361 * 6 5 4 9 9 N 1.31408 * 119.99984 * 163.85543 * 8 6 5 10 10 Si 1.86801 * 119.99898 * 343.85020 * 8 6 5 11 11 H 1.48500 * 109.46981 * 95.34686 * 10 8 6 12 12 H 1.48497 * 109.47595 * 215.34882 * 10 8 6 13 13 H 1.48508 * 109.47206 * 335.35182 * 10 8 6 14 14 C 1.34780 * 119.99604 * 90.00347 * 5 4 3 15 15 O 1.21293 * 120.00479 * 5.46889 * 14 5 4 16 16 C 1.50707 * 119.99702 * 185.47140 * 14 5 4 17 17 O 1.42897 * 109.47126 * 175.10406 * 16 14 5 18 18 C 1.42897 * 114.00194 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47303 * 180.02562 * 18 17 16 20 20 C 1.38288 * 119.96973 * 269.97887 * 19 18 17 21 21 C 1.38247 * 120.10751 * 180.02562 * 20 19 18 22 22 C 1.38168 * 120.05878 * 359.67687 * 21 20 19 23 23 C 1.38710 * 119.94127 * 0.61857 * 22 21 20 24 24 O 1.35893 * 120.05647 * 179.67784 * 23 22 21 25 25 C 1.42902 * 117.00052 * 359.72578 * 24 23 22 26 26 C 1.38123 * 119.97389 * 89.99862 * 19 18 17 27 27 H 1.08996 * 109.47901 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47108 * 300.00325 * 1 2 3 29 29 H 1.09006 * 109.47097 * 59.99515 * 1 2 3 30 30 H 1.09006 * 109.46837 * 59.99522 * 3 2 1 31 31 H 1.09004 * 109.47137 * 299.99997 * 3 2 1 32 32 H 1.09001 * 109.46913 * 304.99464 * 4 3 2 33 33 H 1.09003 * 109.47104 * 184.99957 * 4 3 2 34 34 H 0.97001 * 119.99849 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47101 * 55.10412 * 16 14 5 36 36 H 1.08997 * 109.47005 * 295.10400 * 16 14 5 37 37 H 1.08999 * 109.47171 * 59.99888 * 18 17 16 38 38 H 1.09000 * 109.47149 * 300.00105 * 18 17 16 39 39 H 1.08000 * 119.94939 * 359.97438 * 20 19 18 40 40 H 1.08008 * 119.96846 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.02900 * 180.30145 * 22 21 20 42 42 H 1.08996 * 109.46892 * 60.00318 * 25 24 23 43 43 H 1.09004 * 109.47087 * 179.97438 * 25 24 23 44 44 H 1.09005 * 109.47131 * 300.00251 * 25 24 23 45 45 H 1.08001 * 120.02375 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2526 6 6 4.0968 -0.7988 -1.3369 7 1 3.7844 -1.3144 -2.2329 8 6 4.6216 -1.5170 -0.2694 9 7 4.4522 -2.8186 -0.2065 10 14 5.5680 -0.6322 1.0763 11 1 4.6524 -0.3227 2.2038 12 1 6.6714 -1.5010 1.5589 13 1 6.1324 0.6308 0.5362 14 6 4.2616 1.3335 -2.3217 15 8 4.2508 2.5421 -2.2196 16 6 4.5947 0.6920 -3.6441 17 8 4.7462 1.7053 -4.6403 18 6 5.0655 1.2009 -5.9386 19 6 5.2019 2.3497 -6.9043 20 6 4.0970 2.7986 -7.6044 21 6 4.2190 3.8519 -8.4914 22 6 5.4444 4.4632 -8.6756 23 6 6.5554 4.0108 -7.9792 24 8 7.7630 4.6061 -8.1635 25 6 7.8173 5.6889 -9.0945 26 6 6.4304 2.9532 -7.0898 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8514 0.5681 0.8410 33 1 3.9787 2.1763 0.0889 34 1 4.8182 -3.3199 0.5389 35 1 3.7900 0.0160 -3.9330 36 1 5.5248 0.1313 -3.5519 37 1 4.2709 0.5351 -6.2753 38 1 6.0055 0.6509 -5.8936 39 1 3.1374 2.3250 -7.4586 40 1 3.3547 4.2004 -9.0373 41 1 5.5381 5.2892 -9.3650 42 1 7.1462 6.4831 -8.7675 43 1 8.8361 6.0729 -9.1461 44 1 7.5109 5.3368 -10.0795 45 1 7.2931 2.6017 -6.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573540032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:36 Heat of formation + Delta-G solvation = -113.212310 kcal Electronic energy + Delta-G solvation = -27135.201501 eV Core-core repulsion = 23119.771902 eV Total energy + Delta-G solvation = -4015.429599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.21973 -39.05872 -38.00683 -37.15763 -36.47412 -34.72408 -31.96433 -31.85209 -30.50897 -29.84570 -27.62760 -27.18728 -25.83856 -25.32008 -24.44460 -22.60085 -22.28448 -21.17973 -19.08541 -17.98600 -17.19412 -16.53861 -16.46358 -16.14637 -16.03054 -15.86907 -15.72723 -15.31110 -15.23087 -14.53500 -14.49604 -14.40177 -13.99491 -13.72353 -13.33159 -13.28573 -12.77131 -12.65273 -12.51419 -12.23054 -11.92350 -11.82844 -11.67638 -11.44278 -11.38816 -11.22469 -11.08404 -10.88209 -10.78274 -10.73175 -10.10291 -9.84440 -9.24129 -9.15229 -9.06613 -8.96601 -8.51175 -8.26031 -7.76800 -6.37995 -4.02440 1.19242 1.41270 3.10067 3.11119 3.25126 3.31846 3.50603 3.69024 3.98512 4.19529 4.42904 4.63485 4.67836 4.88236 4.90353 4.92337 5.02954 5.14691 5.23573 5.24150 5.34362 5.41809 5.58665 5.60877 5.67265 5.68411 5.78439 5.84702 5.91470 5.93640 5.97730 6.04806 6.06715 6.14363 6.21067 6.30084 6.35661 6.45107 6.58386 6.68083 7.29293 7.37461 7.52621 7.80879 8.11734 8.26761 9.00982 9.37348 9.67661 10.72879 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.002753 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.072080 B =10168.180834 C =10793.261382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.055 3.945 4 C 0.103 3.897 5 N -0.458 5.458 6 C -0.334 4.334 7 H 0.102 0.898 8 C 0.074 3.926 9 N -0.863 5.863 10 Si 0.877 3.123 11 H -0.274 1.274 12 H -0.289 1.289 13 H -0.262 1.262 14 C 0.486 3.514 15 O -0.582 6.582 16 C 0.064 3.936 17 O -0.362 6.362 18 C 0.099 3.901 19 C -0.041 4.041 20 C -0.133 4.133 21 C -0.086 4.086 22 C -0.207 4.207 23 C 0.120 3.880 24 O -0.318 6.318 25 C 0.028 3.972 26 C -0.128 4.128 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.273 0.727 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 9.874 -13.529 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.023 4.023 4 C -0.020 4.020 5 N -0.181 5.181 6 C -0.461 4.461 7 H 0.119 0.881 8 C -0.133 4.133 9 N -0.498 5.498 10 Si 0.706 3.294 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.187 1.187 14 C 0.275 3.725 15 O -0.465 6.465 16 C -0.015 4.015 17 O -0.281 6.281 18 C 0.022 3.978 19 C -0.041 4.041 20 C -0.152 4.152 21 C -0.104 4.104 22 C -0.225 4.225 23 C 0.075 3.925 24 O -0.232 6.232 25 C -0.067 4.067 26 C -0.146 4.146 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.147 10.265 -13.246 16.758 hybrid contribution 0.011 0.286 0.635 0.697 sum 0.158 10.551 -12.611 16.443 Atomic orbital electron populations 1.22661 0.83053 1.02092 0.98735 1.88224 1.17656 1.26553 1.95005 1.22887 0.94915 0.85256 0.99287 1.21706 0.92166 0.99069 0.89032 1.43539 1.58425 1.07056 1.09052 1.18949 1.42608 0.78974 1.05556 0.88054 1.25239 0.95533 0.95070 0.97496 1.69704 1.41941 1.06674 1.31517 0.86930 0.79939 0.80361 0.82175 1.20118 1.21657 1.18656 1.19982 0.79858 0.86658 0.86007 1.90568 1.56234 1.14417 1.85329 1.22069 1.02123 0.89956 0.87361 1.88030 1.91479 1.32335 1.16267 1.21299 1.00331 0.92953 0.83199 1.19430 0.92563 0.96552 0.95596 1.21011 0.98391 0.98090 0.97690 1.20892 0.96679 0.95316 0.97503 1.21210 0.93342 1.03636 1.04347 1.18957 0.84376 0.93447 0.95682 1.86077 1.28727 1.47504 1.60842 1.23030 1.03628 0.88216 0.91802 1.20343 0.98570 0.96286 0.99433 0.90073 0.95207 0.94902 0.93830 0.93384 0.90987 0.89530 0.91658 0.90910 0.90247 0.92166 0.92194 0.85601 0.85723 0.85657 0.92703 0.88351 0.92789 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.65 10.18 -35.23 -0.36 -8.00 16 3 C 0.05 1.09 6.28 37.16 0.23 1.33 16 4 C 0.10 2.33 4.59 -4.05 -0.02 2.31 16 5 N -0.46 -11.20 2.14 -114.82 -0.25 -11.44 16 6 C -0.33 -8.67 8.64 -14.93 -0.13 -8.80 16 7 H 0.10 2.73 7.18 -52.49 -0.38 2.35 16 8 C 0.07 1.96 5.39 -17.47 -0.09 1.87 16 9 N -0.86 -23.96 13.96 55.50 0.77 -23.19 16 10 Si 0.88 20.83 24.75 -169.99 -4.21 16.63 16 11 H -0.27 -6.31 6.77 56.52 0.38 -5.93 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.26 -6.28 7.05 56.52 0.40 -5.89 16 14 C 0.49 11.72 7.70 -10.98 -0.08 11.63 16 15 O -0.58 -15.34 16.06 -14.31 -0.23 -15.57 16 16 C 0.06 1.30 5.13 36.01 0.18 1.49 16 17 O -0.36 -7.16 9.86 -55.09 -0.54 -7.70 16 18 C 0.10 1.48 6.06 36.01 0.22 1.70 16 19 C -0.04 -0.59 5.51 -104.64 -0.58 -1.17 16 20 C -0.13 -1.72 9.70 -39.56 -0.38 -2.10 16 21 C -0.09 -0.96 10.04 -39.60 -0.40 -1.36 16 22 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 23 C 0.12 1.57 6.69 -39.22 -0.26 1.31 16 24 O -0.32 -3.86 10.50 -19.41 -0.20 -4.07 16 25 C 0.03 0.21 9.81 101.05 0.99 1.21 16 26 C -0.13 -1.82 9.64 -39.43 -0.38 -2.20 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.68 3.13 -51.93 -0.16 1.52 16 33 H 0.09 1.89 7.35 -51.93 -0.38 1.50 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.07 1.39 7.59 -51.93 -0.39 1.00 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 42 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.33 7.67 -51.93 -0.40 -0.06 16 45 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -33.25 376.11 -5.95 -39.20 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.67 Total: 2.31 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 0.06 Total: 6.16 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.53 Total: -34.63 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.34 Total: -35.34 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.21 Total: 16.63 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.25 -5.95 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573540032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.011 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds