Wall clock time and date at job start Tue Mar 31 2020 14:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00449 * 2 1 4 4 C 1.52998 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47224 * 64.99643 * 4 3 2 6 6 C 1.37093 * 120.00330 * 270.00059 * 5 4 3 7 7 H 1.07996 * 120.00278 * 139.97668 * 6 5 4 8 8 C 1.38952 * 120.00033 * 319.97361 * 6 5 4 9 9 N 1.31408 * 119.99984 * 163.85543 * 8 6 5 10 10 Si 1.86801 * 119.99898 * 343.85020 * 8 6 5 11 11 H 1.48500 * 109.46981 * 95.34686 * 10 8 6 12 12 H 1.48497 * 109.47595 * 215.34882 * 10 8 6 13 13 H 1.48508 * 109.47206 * 335.35182 * 10 8 6 14 14 C 1.34780 * 119.99604 * 90.00347 * 5 4 3 15 15 O 1.21293 * 120.00479 * 5.46889 * 14 5 4 16 16 C 1.50707 * 119.99702 * 185.47140 * 14 5 4 17 17 O 1.42897 * 109.47126 * 175.10406 * 16 14 5 18 18 C 1.42897 * 114.00194 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47303 * 180.02562 * 18 17 16 20 20 C 1.38288 * 119.96973 * 269.97887 * 19 18 17 21 21 C 1.38247 * 120.10751 * 180.02562 * 20 19 18 22 22 C 1.38168 * 120.05878 * 359.67687 * 21 20 19 23 23 C 1.38710 * 119.94127 * 0.61857 * 22 21 20 24 24 O 1.35893 * 120.05647 * 179.67784 * 23 22 21 25 25 C 1.42902 * 117.00052 * 359.72578 * 24 23 22 26 26 C 1.38123 * 119.97389 * 89.99862 * 19 18 17 27 27 H 1.08996 * 109.47901 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47108 * 300.00325 * 1 2 3 29 29 H 1.09006 * 109.47097 * 59.99515 * 1 2 3 30 30 H 1.09006 * 109.46837 * 59.99522 * 3 2 1 31 31 H 1.09004 * 109.47137 * 299.99997 * 3 2 1 32 32 H 1.09001 * 109.46913 * 304.99464 * 4 3 2 33 33 H 1.09003 * 109.47104 * 184.99957 * 4 3 2 34 34 H 0.97001 * 119.99849 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47101 * 55.10412 * 16 14 5 36 36 H 1.08997 * 109.47005 * 295.10400 * 16 14 5 37 37 H 1.08999 * 109.47171 * 59.99888 * 18 17 16 38 38 H 1.09000 * 109.47149 * 300.00105 * 18 17 16 39 39 H 1.08000 * 119.94939 * 359.97438 * 20 19 18 40 40 H 1.08008 * 119.96846 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.02900 * 180.30145 * 22 21 20 42 42 H 1.08996 * 109.46892 * 60.00318 * 25 24 23 43 43 H 1.09004 * 109.47087 * 179.97438 * 25 24 23 44 44 H 1.09005 * 109.47131 * 300.00251 * 25 24 23 45 45 H 1.08001 * 120.02375 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2526 6 6 4.0968 -0.7988 -1.3369 7 1 3.7844 -1.3144 -2.2329 8 6 4.6216 -1.5170 -0.2694 9 7 4.4522 -2.8186 -0.2065 10 14 5.5680 -0.6322 1.0763 11 1 4.6524 -0.3227 2.2038 12 1 6.6714 -1.5010 1.5589 13 1 6.1324 0.6308 0.5362 14 6 4.2616 1.3335 -2.3217 15 8 4.2508 2.5421 -2.2196 16 6 4.5947 0.6920 -3.6441 17 8 4.7462 1.7053 -4.6403 18 6 5.0655 1.2009 -5.9386 19 6 5.2019 2.3497 -6.9043 20 6 4.0970 2.7986 -7.6044 21 6 4.2190 3.8519 -8.4914 22 6 5.4444 4.4632 -8.6756 23 6 6.5554 4.0108 -7.9792 24 8 7.7630 4.6061 -8.1635 25 6 7.8173 5.6889 -9.0945 26 6 6.4304 2.9532 -7.0898 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8514 0.5681 0.8410 33 1 3.9787 2.1763 0.0889 34 1 4.8182 -3.3199 0.5389 35 1 3.7900 0.0160 -3.9330 36 1 5.5248 0.1313 -3.5519 37 1 4.2709 0.5351 -6.2753 38 1 6.0055 0.6509 -5.8936 39 1 3.1374 2.3250 -7.4586 40 1 3.3547 4.2004 -9.0373 41 1 5.5381 5.2892 -9.3650 42 1 7.1462 6.4831 -8.7675 43 1 8.8361 6.0729 -9.1461 44 1 7.5109 5.3368 -10.0795 45 1 7.2931 2.6017 -6.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573540032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:35 Heat of formation + Delta-G solvation = -134.692435 kcal Electronic energy + Delta-G solvation = -27136.132949 eV Core-core repulsion = 23119.771902 eV Total energy + Delta-G solvation = -4016.361047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14669 -40.85045 -39.19694 -38.58892 -37.80827 -36.64050 -33.95392 -32.92951 -31.61639 -31.30837 -28.87109 -28.14766 -27.24334 -26.76177 -26.15980 -23.94242 -23.53153 -22.14500 -20.99930 -19.16990 -18.82400 -18.19812 -17.79855 -17.46847 -17.25384 -17.04025 -16.82187 -16.69040 -16.59934 -16.14769 -16.09240 -15.86384 -15.31342 -15.07425 -14.68973 -14.50613 -14.31294 -14.10938 -13.67302 -13.59874 -13.32936 -13.16081 -13.08121 -12.86217 -12.72129 -12.58410 -12.43296 -12.32845 -11.98068 -11.97085 -11.71878 -11.68196 -11.09040 -10.66524 -10.60514 -10.41247 -9.92265 -9.73216 -9.19065 -8.42609 -6.08539 0.21168 0.46093 1.21133 1.32577 1.42543 1.79471 2.10730 2.23033 2.36938 2.73807 2.90873 3.07884 3.34551 3.83580 3.85053 4.01093 4.08029 4.11812 4.15386 4.23661 4.30839 4.36149 4.36360 4.38434 4.40334 4.46643 4.48320 4.54817 4.55816 4.57866 4.61635 4.73042 4.74553 4.76828 4.85688 5.02325 5.28524 5.43221 5.45092 5.60935 5.76916 6.01904 6.16264 6.25618 6.39094 6.44700 7.00062 7.39746 7.73090 8.71233 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.002753 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.072080 B =10168.180834 C =10793.261382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.060 3.940 4 C 0.092 3.908 5 N -0.464 5.464 6 C -0.326 4.326 7 H 0.085 0.915 8 C 0.037 3.963 9 N -0.897 5.897 10 Si 0.924 3.076 11 H -0.261 1.261 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.478 3.522 15 O -0.608 6.608 16 C 0.073 3.927 17 O -0.387 6.387 18 C 0.094 3.906 19 C -0.061 4.061 20 C -0.146 4.146 21 C -0.082 4.082 22 C -0.202 4.202 23 C 0.110 3.890 24 O -0.340 6.340 25 C 0.018 3.982 26 C -0.153 4.153 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.277 0.723 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.136 0.864 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.063 0.937 43 H 0.117 0.883 44 H 0.070 0.930 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 11.337 -14.365 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.017 4.017 4 C -0.030 4.030 5 N -0.187 5.187 6 C -0.453 4.453 7 H 0.103 0.897 8 C -0.167 4.167 9 N -0.535 5.535 10 Si 0.751 3.249 11 H -0.187 1.187 12 H -0.213 1.213 13 H -0.193 1.193 14 C 0.268 3.732 15 O -0.493 6.493 16 C -0.006 4.006 17 O -0.306 6.306 18 C 0.019 3.981 19 C -0.061 4.061 20 C -0.165 4.165 21 C -0.100 4.100 22 C -0.221 4.221 23 C 0.065 3.935 24 O -0.254 6.254 25 C -0.076 4.076 26 C -0.172 4.172 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.154 0.846 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.088 0.912 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.591 11.730 -14.087 18.341 hybrid contribution 0.218 -0.087 0.771 0.806 sum -0.373 11.643 -13.316 17.692 Atomic orbital electron populations 1.22870 0.80464 1.03191 1.00437 1.88150 1.20618 1.27347 1.95344 1.22802 0.93008 0.85227 1.00676 1.21869 0.94376 0.98844 0.87933 1.43646 1.58560 1.06551 1.09910 1.18821 1.41987 0.79581 1.04946 0.89717 1.25722 0.96151 0.95487 0.99303 1.69767 1.43294 1.07774 1.32634 0.86178 0.79079 0.79056 0.80556 1.18747 1.21268 1.19344 1.20597 0.79056 0.86454 0.87071 1.90536 1.57346 1.15500 1.85938 1.21915 1.02656 0.89840 0.86202 1.87989 1.91793 1.32925 1.17893 1.21536 1.01419 0.93879 0.81308 1.19478 0.93313 0.97081 0.96272 1.21261 0.98304 0.98840 0.98056 1.21295 0.97805 0.94230 0.96686 1.21580 0.92602 1.03955 1.03948 1.19110 0.85421 0.93300 0.95685 1.86050 1.28514 1.48728 1.62098 1.23361 1.05289 0.87275 0.91695 1.20440 0.98503 0.97611 1.00671 0.89388 0.92624 0.93965 0.90318 0.93933 0.91651 0.89135 0.91320 0.89857 0.89646 0.90330 0.91284 0.84597 0.82484 0.82613 0.91796 0.86480 0.91178 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.54 10.18 -148.98 -1.52 -18.05 16 3 C 0.06 2.34 6.28 71.98 0.45 2.79 16 4 C 0.09 4.11 4.59 86.38 0.40 4.50 16 5 N -0.46 -22.71 2.14 -635.55 -1.36 -24.07 16 6 C -0.33 -17.05 8.64 84.04 0.73 -16.32 16 7 H 0.09 4.65 7.18 -2.91 -0.02 4.63 16 8 C 0.04 1.99 5.39 84.93 0.46 2.45 16 9 N -0.90 -50.13 13.96 21.66 0.30 -49.83 16 10 Si 0.92 42.68 24.75 68.60 1.70 44.38 16 11 H -0.26 -11.44 6.77 99.48 0.67 -10.77 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.27 -12.59 7.05 99.48 0.70 -11.88 16 14 C 0.48 23.21 7.70 87.66 0.67 23.89 16 15 O -0.61 -32.26 16.06 15.92 0.26 -32.00 16 16 C 0.07 2.99 5.13 71.24 0.37 3.36 16 17 O -0.39 -15.42 9.86 -129.99 -1.28 -16.71 16 18 C 0.09 2.84 6.06 71.24 0.43 3.27 16 19 C -0.06 -1.77 5.51 -19.88 -0.11 -1.88 16 20 C -0.15 -3.60 9.70 22.28 0.22 -3.38 16 21 C -0.08 -1.65 10.04 22.26 0.22 -1.42 16 22 C -0.20 -4.09 9.04 22.37 0.20 -3.89 16 23 C 0.11 2.80 6.69 22.51 0.15 2.95 16 24 O -0.34 -8.00 10.50 -92.35 -0.97 -8.97 16 25 C 0.02 0.23 9.81 113.37 1.11 1.34 16 26 C -0.15 -4.47 9.64 22.37 0.22 -4.25 16 27 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.98 3.13 -2.39 -0.01 2.97 16 33 H 0.09 3.89 7.35 -2.39 -0.02 3.87 16 34 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.08 3.20 7.59 -2.39 -0.02 3.19 16 36 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.08 2.02 8.09 -2.39 -0.02 2.00 16 38 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 39 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.16 2.09 6.30 -2.91 -0.02 2.07 16 42 H 0.06 0.71 7.65 -2.39 -0.02 0.69 16 43 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 0.68 7.67 -2.38 -0.02 0.66 16 45 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -71.77 376.11 4.84 -66.93 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.95 Total: 22.85 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 6.76 Total: 15.46 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.06 Total: -73.90 kcal Atomic # 8 Polarization: -72.21 SS G_CDS: -3.51 Total: -75.73 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.70 Total: 44.38 kcal Total: -71.77 4.84 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573540032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.759 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds