Wall clock time and date at job start Tue Mar 31 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 14 14 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 15 15 O 1.21283 * 120.00117 * 260.00788 * 14 11 10 16 16 N 1.34772 * 119.99971 * 79.99728 * 14 11 10 17 17 C 1.46496 * 120.00222 * 180.02562 * 16 14 11 18 18 H 1.09002 * 110.27735 * 34.29754 * 17 16 14 19 19 C 1.54600 * 110.30746 * 272.21057 * 17 16 14 20 20 C 1.55107 * 102.84508 * 219.18362 * 19 17 16 21 21 N 1.48529 * 103.28415 * 37.30427 * 20 19 17 22 22 C 1.46902 * 111.00238 * 200.33368 * 21 20 19 23 23 C 1.53000 * 109.46826 * 287.39593 * 22 21 20 24 24 F 1.39905 * 109.46989 * 59.99760 * 23 22 21 25 25 F 1.39898 * 109.47119 * 179.97438 * 23 22 21 26 26 F 1.39897 * 109.47539 * 300.00371 * 23 22 21 27 27 C 1.47907 * 105.82322 * 320.84850 * 21 20 19 28 28 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 32 32 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 33 33 H 1.00894 * 110.99558 * 296.04896 * 13 11 10 34 34 H 1.00892 * 110.99957 * 60.00190 * 13 11 10 35 35 H 0.97003 * 120.00400 * 0.02562 * 16 14 11 36 36 H 1.08992 * 110.72249 * 337.48327 * 19 17 16 37 37 H 1.09004 * 110.72236 * 100.77082 * 19 17 16 38 38 H 1.09003 * 110.59205 * 278.87331 * 20 19 17 39 39 H 1.08997 * 110.82431 * 155.84733 * 20 19 17 40 40 H 1.08998 * 109.46735 * 47.39716 * 22 21 20 41 41 H 1.08998 * 109.47007 * 167.39753 * 22 21 20 42 42 H 1.09003 * 109.91435 * 265.97951 * 27 21 20 43 43 H 1.08997 * 110.08488 * 144.77503 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7882 -5.0068 0.8432 13 7 0.7279 -5.1189 -1.2538 14 6 2.4547 -6.1299 0.1250 15 8 2.7862 -6.7537 -0.8608 16 7 2.9579 -6.4586 1.3313 17 6 3.9057 -7.5692 1.4516 18 1 4.5395 -7.6226 0.5664 19 6 3.1480 -8.9021 1.6501 20 6 4.0273 -9.6472 2.6882 21 7 4.4843 -8.5602 3.5913 22 6 5.6848 -8.9640 4.3356 23 6 5.3015 -9.9904 5.4035 24 9 4.7340 -11.1123 4.7895 25 9 6.4447 -10.3754 6.1119 26 9 4.3752 -9.4228 6.2849 27 6 4.7677 -7.4016 2.7167 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 0.8903 30 1 0.6246 -2.5571 -0.8897 31 1 2.8718 -3.6044 -0.8895 32 1 2.8718 -3.6044 0.8904 33 1 0.0232 -4.4009 -1.3300 34 1 1.3475 -5.1034 -2.0500 35 1 2.6926 -5.9599 2.1198 36 1 2.1496 -8.7225 2.0488 37 1 3.0967 -9.4596 0.7149 38 1 4.8769 -10.1239 2.1992 39 1 3.4392 -10.3822 3.2377 40 1 6.4064 -9.4062 3.6488 41 1 6.1268 -8.0899 4.8139 42 1 5.8238 -7.3892 2.4474 43 1 4.5035 -6.4748 3.2259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578353503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:26 Heat of formation + Delta-G solvation = -195.761228 kcal Electronic energy + Delta-G solvation = -27537.094360 eV Core-core repulsion = 23008.521182 eV Total energy + Delta-G solvation = -4528.573178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.41414 -47.98418 -47.83671 -40.22442 -38.84504 -35.58509 -34.72178 -32.87569 -32.00875 -29.91210 -29.25225 -28.10514 -26.24772 -23.95773 -23.53765 -21.80029 -21.31656 -20.63286 -19.89064 -18.90146 -18.79393 -17.98536 -17.32524 -16.69118 -16.25683 -15.94366 -15.09355 -15.00587 -14.82945 -14.68509 -14.52715 -14.48422 -14.43923 -14.31015 -14.06311 -14.03002 -13.94267 -13.35025 -13.20457 -13.06070 -12.72429 -12.41790 -12.22779 -12.13744 -11.85648 -11.70676 -11.64902 -11.17540 -11.08073 -10.95121 -10.68840 -10.02185 -9.94457 -9.31813 -9.22850 -9.21334 -9.02809 -8.46663 -8.20954 -6.10913 -4.14075 2.29872 2.87328 3.02594 3.22611 3.24364 3.32538 3.36003 3.42806 3.63546 3.97728 4.14512 4.36452 4.37907 4.57724 4.73046 4.79309 4.83613 4.94863 5.04894 5.15785 5.22894 5.25521 5.42068 5.51862 5.56600 5.67458 5.73774 5.85307 6.13023 6.20209 6.25437 6.47250 6.51738 6.84629 7.40210 7.49493 7.58682 7.66599 7.86123 7.88610 8.28529 8.41876 8.92177 9.51036 11.00030 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.002305 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.332114 B =12143.641625 C =13186.734946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.074 3.926 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.528 3.472 15 O -0.538 6.538 16 N -0.726 5.726 17 C 0.139 3.861 18 H 0.096 0.904 19 C -0.132 4.132 20 C 0.025 3.975 21 N -0.510 5.510 22 C -0.001 4.001 23 C 0.459 3.541 24 F -0.183 7.183 25 F -0.185 7.185 26 F -0.172 7.172 27 C 0.032 3.968 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.354 0.646 34 H 0.345 0.655 35 H 0.404 0.596 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.063 0.937 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.029 -20.512 9.655 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.176 4.176 11 C -0.041 4.041 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.414 6.414 16 N -0.380 5.380 17 C 0.033 3.967 18 H 0.114 0.886 19 C -0.172 4.172 20 C -0.103 4.103 21 N -0.235 5.235 22 C -0.131 4.131 23 C 0.405 3.595 24 F -0.165 7.165 25 F -0.167 7.167 26 F -0.154 7.154 27 C -0.095 4.095 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.240 0.760 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.081 0.919 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.483 -21.445 9.615 25.734 hybrid contribution 1.339 1.814 -0.094 2.256 sum 11.822 -19.631 9.521 24.815 Atomic orbital electron populations 1.69957 1.06024 1.26700 1.50475 1.25018 0.94870 0.99333 0.95134 0.86531 0.80080 0.83696 0.77673 1.19773 1.20951 1.20928 1.21210 0.93028 0.90883 1.51042 0.92690 1.19110 0.93733 0.91124 0.97386 1.22372 0.99858 0.93970 1.01434 1.21480 0.94685 0.92243 0.95661 0.88520 1.58743 1.18447 1.55914 1.03184 1.20928 0.80940 0.84257 0.82380 1.90630 1.59983 1.53572 1.37193 1.46079 1.46839 1.34721 1.10370 1.21658 0.90726 0.86712 0.97609 0.88556 1.22989 0.99862 0.95399 0.98912 1.23617 0.99080 0.93945 0.93634 1.64686 1.27386 1.06210 1.25211 1.23425 0.94440 0.99049 0.96213 1.20386 0.74705 0.81657 0.82785 1.93168 1.85462 1.55308 1.82545 1.93192 1.50858 1.92102 1.80514 1.93219 1.66898 1.84472 1.70773 1.23156 0.99087 0.94682 0.92600 0.92910 0.96286 0.96411 0.92728 0.92545 0.83024 0.84176 0.76046 0.89759 0.89952 0.92778 0.88612 0.89745 0.86041 0.91895 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.56 4.74 -27.88 -0.13 0.43 16 10 C -0.14 -2.57 4.78 -26.74 -0.13 -2.70 16 11 C 0.07 1.21 3.21 -68.86 -0.22 0.99 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 13 N -0.83 -13.95 8.94 -5.65 -0.05 -14.00 16 14 C 0.53 8.14 7.08 -10.99 -0.08 8.07 16 15 O -0.54 -9.88 15.92 5.55 0.09 -9.79 16 16 N -0.73 -8.44 5.07 -52.49 -0.27 -8.71 16 17 C 0.14 1.37 3.31 -66.57 -0.22 1.15 16 18 H 0.10 1.08 7.60 -51.93 -0.39 0.68 16 19 C -0.13 -1.24 6.79 -24.78 -0.17 -1.40 16 20 C 0.02 0.19 5.41 -1.81 -0.01 0.18 16 21 N -0.51 -3.89 5.17 -230.34 -1.19 -5.09 16 22 C 0.00 -0.01 4.83 -3.82 -0.02 -0.02 16 23 C 0.46 3.55 3.28 37.16 0.12 3.67 16 24 F -0.18 -1.56 14.67 2.25 0.03 -1.53 16 25 F -0.19 -1.48 17.32 2.25 0.04 -1.44 16 26 F -0.17 -1.65 17.24 2.25 0.04 -1.61 16 27 C 0.03 0.24 6.43 -2.75 -0.02 0.22 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.35 6.00 7.55 -39.29 -0.30 5.70 16 34 H 0.35 5.87 8.58 -39.30 -0.34 5.54 16 35 H 0.40 4.04 8.33 -40.82 -0.34 3.70 16 36 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.36 7.81 -51.93 -0.41 -0.04 16 39 H 0.10 0.77 6.73 -51.93 -0.35 0.42 16 40 H 0.08 0.37 7.83 -51.93 -0.41 -0.04 16 41 H 0.12 0.54 8.08 -51.93 -0.42 0.12 16 42 H 0.06 0.38 7.77 -51.93 -0.40 -0.02 16 43 H 0.10 0.71 7.63 -51.93 -0.40 0.32 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -31.34 362.50 -7.59 -38.93 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.18 Total: 9.16 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.28 Total: -2.35 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.77 Total: -52.83 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.11 Total: -4.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.34 -7.59 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578353503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.828 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds