Wall clock time and date at job start Tue Mar 31 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 14 14 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 15 15 O 1.21283 * 120.00117 * 260.00788 * 14 11 10 16 16 N 1.34772 * 119.99971 * 79.99728 * 14 11 10 17 17 C 1.46496 * 120.00222 * 180.02562 * 16 14 11 18 18 H 1.09002 * 110.27735 * 34.29754 * 17 16 14 19 19 C 1.54600 * 110.30746 * 272.21057 * 17 16 14 20 20 C 1.55107 * 102.84508 * 219.18362 * 19 17 16 21 21 N 1.48529 * 103.28415 * 37.30427 * 20 19 17 22 22 C 1.46902 * 111.00238 * 200.33368 * 21 20 19 23 23 C 1.53000 * 109.46826 * 287.39593 * 22 21 20 24 24 F 1.39905 * 109.46989 * 59.99760 * 23 22 21 25 25 F 1.39898 * 109.47119 * 179.97438 * 23 22 21 26 26 F 1.39897 * 109.47539 * 300.00371 * 23 22 21 27 27 C 1.47907 * 105.82322 * 320.84850 * 21 20 19 28 28 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 32 32 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 33 33 H 1.00894 * 110.99558 * 296.04896 * 13 11 10 34 34 H 1.00892 * 110.99957 * 60.00190 * 13 11 10 35 35 H 0.97003 * 120.00400 * 0.02562 * 16 14 11 36 36 H 1.08992 * 110.72249 * 337.48327 * 19 17 16 37 37 H 1.09004 * 110.72236 * 100.77082 * 19 17 16 38 38 H 1.09003 * 110.59205 * 278.87331 * 20 19 17 39 39 H 1.08997 * 110.82431 * 155.84733 * 20 19 17 40 40 H 1.08998 * 109.46735 * 47.39716 * 22 21 20 41 41 H 1.08998 * 109.47007 * 167.39753 * 22 21 20 42 42 H 1.09003 * 109.91435 * 265.97951 * 27 21 20 43 43 H 1.08997 * 110.08488 * 144.77503 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7882 -5.0068 0.8432 13 7 0.7279 -5.1189 -1.2538 14 6 2.4547 -6.1299 0.1250 15 8 2.7862 -6.7537 -0.8608 16 7 2.9579 -6.4586 1.3313 17 6 3.9057 -7.5692 1.4516 18 1 4.5395 -7.6226 0.5664 19 6 3.1480 -8.9021 1.6501 20 6 4.0273 -9.6472 2.6882 21 7 4.4843 -8.5602 3.5913 22 6 5.6848 -8.9640 4.3356 23 6 5.3015 -9.9904 5.4035 24 9 4.7340 -11.1123 4.7895 25 9 6.4447 -10.3754 6.1119 26 9 4.3752 -9.4228 6.2849 27 6 4.7677 -7.4016 2.7167 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 0.8903 30 1 0.6246 -2.5571 -0.8897 31 1 2.8718 -3.6044 -0.8895 32 1 2.8718 -3.6044 0.8904 33 1 0.0232 -4.4009 -1.3300 34 1 1.3475 -5.1034 -2.0500 35 1 2.6926 -5.9599 2.1198 36 1 2.1496 -8.7225 2.0488 37 1 3.0967 -9.4596 0.7149 38 1 4.8769 -10.1239 2.1992 39 1 3.4392 -10.3822 3.2377 40 1 6.4064 -9.4062 3.6488 41 1 6.1268 -8.0899 4.8139 42 1 5.8238 -7.3892 2.4474 43 1 4.5035 -6.4748 3.2259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578353503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:26 Heat of formation + Delta-G solvation = -219.619007 kcal Electronic energy + Delta-G solvation = -27538.128911 eV Core-core repulsion = 23008.521182 eV Total energy + Delta-G solvation = -4529.607729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.02950 -48.59178 -48.48819 -41.22214 -39.74891 -37.06606 -35.69043 -34.82060 -32.77436 -31.66522 -29.92199 -28.96381 -27.72158 -25.56450 -24.15975 -22.69248 -22.34826 -21.73459 -21.17782 -19.51509 -19.40220 -18.96853 -18.46613 -18.04317 -17.55610 -16.74038 -16.46665 -15.96100 -15.92571 -15.73403 -15.57659 -15.37983 -15.28956 -15.07739 -14.95506 -14.75053 -14.67680 -14.65969 -14.54656 -13.96823 -13.86521 -13.55558 -13.42839 -13.07733 -12.95401 -12.86653 -12.66784 -12.48572 -12.41313 -12.34843 -11.88765 -11.78749 -11.69077 -11.27035 -10.71253 -10.55658 -10.10526 -9.70123 -9.61373 -8.20632 -6.30760 1.39521 1.41251 1.52728 1.63097 1.74590 2.13188 2.40813 2.53602 2.88924 3.10521 3.13372 3.33675 3.53557 3.69280 3.78834 3.85095 4.06325 4.15891 4.19533 4.20675 4.26446 4.28302 4.35720 4.59881 4.69454 4.74851 4.83281 4.87963 4.96398 5.09321 5.11695 5.48127 5.49067 5.59282 5.64268 5.67802 5.82410 6.09601 6.22473 6.49146 6.55681 6.85519 7.26211 7.38526 8.90369 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.002305 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.332114 B =12143.641625 C =13186.734946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.119 4.119 11 C 0.079 3.921 12 H 0.107 0.893 13 N -0.831 5.831 14 C 0.531 3.469 15 O -0.570 6.570 16 N -0.711 5.711 17 C 0.135 3.865 18 H 0.085 0.915 19 C -0.130 4.130 20 C 0.032 3.968 21 N -0.523 5.523 22 C 0.002 3.998 23 C 0.456 3.544 24 F -0.190 7.190 25 F -0.187 7.187 26 F -0.186 7.186 27 C 0.040 3.960 28 H 0.263 0.737 29 H 0.002 0.998 30 H 0.001 0.999 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.352 0.648 34 H 0.344 0.656 35 H 0.414 0.586 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.140 0.860 42 H 0.084 0.916 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.838 -20.575 10.551 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.159 4.159 11 C -0.036 4.036 12 H 0.125 0.875 13 N -0.362 5.362 14 C 0.317 3.683 15 O -0.448 6.448 16 N -0.364 5.364 17 C 0.030 3.970 18 H 0.104 0.896 19 C -0.170 4.170 20 C -0.096 4.096 21 N -0.247 5.247 22 C -0.128 4.128 23 C 0.402 3.598 24 F -0.172 7.172 25 F -0.169 7.169 26 F -0.168 7.168 27 C -0.087 4.087 28 H 0.072 0.928 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.158 0.842 42 H 0.102 0.898 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.311 -21.522 10.552 26.946 hybrid contribution 0.755 1.777 -0.338 1.960 sum 13.066 -19.745 10.214 25.786 Atomic orbital electron populations 1.70070 1.07530 1.27665 1.51530 1.25876 0.95717 1.03025 0.94844 0.85489 0.79101 0.79294 0.77706 1.18820 1.20720 1.20356 1.21656 0.93386 0.92401 1.50547 0.92578 1.18982 0.94101 0.92128 0.95657 1.22111 0.98706 0.93559 1.01513 1.21426 0.94837 0.91508 0.95820 0.87482 1.58761 1.18414 1.55637 1.03433 1.20651 0.80722 0.83848 0.83066 1.90621 1.61078 1.54656 1.38472 1.45980 1.46137 1.34785 1.09453 1.21800 0.90514 0.86108 0.98624 0.89642 1.22907 0.99636 0.95353 0.99070 1.23540 0.99157 0.93759 0.93112 1.64636 1.28689 1.06161 1.25242 1.23521 0.94014 0.99377 0.95842 1.20709 0.74285 0.81854 0.82960 1.93156 1.85616 1.55819 1.82569 1.93187 1.50831 1.92172 1.80680 1.93192 1.67512 1.84652 1.71406 1.23095 0.99607 0.94788 0.91194 0.92784 0.98005 0.98092 0.93708 0.91273 0.83351 0.84348 0.74883 0.90872 0.90791 0.91418 0.89077 0.87604 0.84190 0.89800 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -29.18 9.11 25.60 0.23 -28.94 16 8 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.37 4.74 29.85 0.14 1.51 16 10 C -0.12 -4.43 4.78 30.59 0.15 -4.28 16 11 C 0.08 2.54 3.21 44.16 0.14 2.68 16 12 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 13 N -0.83 -27.99 8.94 -171.79 -1.54 -29.53 16 14 C 0.53 15.92 7.08 87.66 0.62 16.54 16 15 O -0.57 -20.69 15.92 -3.04 -0.05 -20.74 16 16 N -0.71 -15.47 5.07 -438.37 -2.22 -17.69 16 17 C 0.14 2.44 3.31 45.87 0.15 2.59 16 18 H 0.09 1.79 7.60 -2.39 -0.02 1.77 16 19 C -0.13 -2.30 6.79 31.86 0.22 -2.08 16 20 C 0.03 0.43 5.41 86.71 0.47 0.90 16 21 N -0.52 -6.67 5.17 -882.66 -4.56 -11.23 16 22 C 0.00 0.02 4.83 86.30 0.42 0.44 16 23 C 0.46 6.22 3.28 71.98 0.24 6.46 16 24 F -0.19 -2.97 14.67 44.97 0.66 -2.31 16 25 F -0.19 -2.66 17.32 44.97 0.78 -1.88 16 26 F -0.19 -3.34 17.24 44.97 0.78 -2.56 16 27 C 0.04 0.49 6.43 86.45 0.56 1.05 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.00 0.04 6.87 -2.39 -0.02 0.02 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 33 H 0.35 12.10 7.55 -89.70 -0.68 11.43 16 34 H 0.34 11.78 8.58 -89.70 -0.77 11.01 16 35 H 0.41 7.47 8.33 -92.71 -0.77 6.70 16 36 H 0.07 1.45 8.06 -2.39 -0.02 1.43 16 37 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.07 0.75 7.81 -2.39 -0.02 0.73 16 39 H 0.09 1.35 6.73 -2.39 -0.02 1.34 16 40 H 0.11 0.53 7.83 -2.39 -0.02 0.52 16 41 H 0.14 0.75 8.08 -2.39 -0.02 0.73 16 42 H 0.08 0.71 7.77 -2.39 -0.02 0.69 16 43 H 0.10 1.18 7.63 -2.39 -0.02 1.16 16 Total: -1.00 -66.88 362.50 -1.20 -68.09 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -1.15 Total: 29.25 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 3.79 Total: -2.48 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -8.04 Total: -112.16 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 2.21 Total: -6.75 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -66.88 -1.20 -68.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578353503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.533 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds