Wall clock time and date at job start Tue Mar 31 2020 14:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47002 * 54.99412 * 11 10 9 13 13 N 1.46901 * 109.46962 * 294.99781 * 11 10 9 14 14 C 1.50698 * 109.47281 * 174.99629 * 11 10 9 15 15 O 1.21287 * 119.99689 * 99.99873 * 14 11 10 16 16 N 1.34770 * 120.00327 * 279.99983 * 14 11 10 17 17 C 1.46499 * 120.00541 * 179.97438 * 16 14 11 18 18 H 1.08998 * 110.28584 * 325.70656 * 17 16 14 19 19 C 1.54263 * 110.32086 * 87.82643 * 17 16 14 20 20 C 1.54378 * 105.05777 * 118.89957 * 19 17 16 21 21 N 1.48560 * 104.59601 * 23.85469 * 20 19 17 22 22 C 1.46901 * 111.00128 * 200.95936 * 21 20 19 23 23 C 1.52995 * 109.47218 * 290.12641 * 22 21 20 24 24 F 1.39904 * 109.47538 * 59.99639 * 23 22 21 25 25 F 1.39902 * 109.47389 * 179.97438 * 23 22 21 26 26 F 1.39901 * 109.47024 * 299.99894 * 23 22 21 27 27 C 1.48721 * 104.28562 * 320.56937 * 21 20 19 28 28 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 30 30 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 31 31 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 32 32 H 1.08996 * 109.47407 * 59.99213 * 10 9 7 33 33 H 1.00903 * 110.99982 * 176.03975 * 13 11 10 34 34 H 1.00900 * 111.00110 * 300.00154 * 13 11 10 35 35 H 0.97004 * 119.99761 * 0.02562 * 16 14 11 36 36 H 1.08999 * 110.32544 * 237.79456 * 19 17 16 37 37 H 1.09005 * 110.32585 * 359.90472 * 19 17 16 38 38 H 1.09006 * 110.40958 * 142.62908 * 20 19 17 39 39 H 1.08998 * 110.41291 * 265.07140 * 20 19 17 40 40 H 1.09010 * 109.46950 * 50.12324 * 22 21 20 41 41 H 1.08993 * 109.47511 * 170.12273 * 22 21 20 42 42 H 1.08995 * 110.39189 * 280.64140 * 27 21 20 43 43 H 1.09002 * 110.50816 * 158.14475 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5514 -2.6368 -0.0014 12 1 5.9148 -2.0481 0.8409 13 7 6.0410 -2.0504 -1.2561 14 6 6.0536 -4.0523 0.1211 15 8 6.4276 -4.6506 -0.8654 16 7 6.0872 -4.6535 1.3268 17 6 6.5749 -6.0298 1.4459 18 1 6.3039 -6.6047 0.5605 19 6 8.1047 -6.0408 1.6442 20 6 8.3264 -6.7108 3.0172 21 7 7.1105 -7.5371 3.2312 22 6 6.9235 -7.8393 4.6566 23 6 8.0094 -8.8133 5.1181 24 9 9.2681 -8.2339 4.9255 25 9 7.8317 -9.1007 6.4757 26 9 7.9217 -9.9956 4.3753 27 6 5.9989 -6.6950 2.7144 28 1 -0.4850 0.8401 0.0004 29 1 3.8751 -0.6798 -0.8895 30 1 3.8745 -0.6809 0.8904 31 1 3.6577 -3.1515 0.8880 32 1 3.6583 -3.1496 -0.8919 33 1 7.0476 -1.9798 -1.2537 34 1 5.7174 -2.5785 -2.0526 35 1 5.7877 -4.1752 2.1158 36 1 8.5844 -6.6226 0.8571 37 1 8.4929 -5.0222 1.6512 38 1 9.2152 -7.3415 2.9933 39 1 8.4156 -5.9561 3.7986 40 1 6.9919 -6.9181 5.2354 41 1 5.9429 -8.2907 4.8067 42 1 5.7228 -5.9382 3.4485 43 1 5.1374 -7.3130 2.4616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578353504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:29 Heat of formation + Delta-G solvation = -191.169497 kcal Electronic energy + Delta-G solvation = -27578.234159 eV Core-core repulsion = 23049.860094 eV Total energy + Delta-G solvation = -4528.374065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.47860 -48.04568 -47.90164 -40.40403 -39.01079 -35.50745 -34.88928 -32.80012 -32.11976 -30.53230 -29.32940 -28.18080 -26.52652 -23.84022 -23.54187 -21.99870 -21.22265 -20.42628 -19.95587 -18.98035 -18.85846 -17.94497 -17.37252 -16.72132 -16.53593 -16.36236 -15.69546 -15.27582 -14.96698 -14.76196 -14.67046 -14.47899 -14.33171 -14.17748 -14.13108 -14.09422 -13.96896 -13.53341 -13.46651 -13.22243 -12.64437 -12.45188 -12.33218 -12.11418 -11.96987 -11.78721 -11.68169 -11.19453 -11.05396 -10.90388 -10.45318 -9.96508 -9.82023 -9.61875 -9.34485 -9.23908 -9.14150 -8.54384 -8.44337 -6.02444 -4.00279 2.22540 2.61066 2.82951 3.27837 3.33140 3.35065 3.41580 3.49180 3.58221 3.92841 4.03224 4.32736 4.48640 4.51395 4.66907 4.68851 4.71129 4.73000 4.92356 4.94880 5.12490 5.30287 5.33639 5.35496 5.49668 5.61721 5.64061 5.72376 5.93524 6.06871 6.23618 6.37029 6.43355 6.82592 7.18371 7.31754 7.41749 7.55522 7.61769 7.83387 8.16181 8.54638 9.02130 9.60510 11.11005 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002280 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.751307 B =12279.266790 C =12986.222457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.260 1.260 6 H -0.290 1.290 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.087 4.087 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.811 5.811 14 C 0.486 3.514 15 O -0.547 6.547 16 N -0.726 5.726 17 C 0.140 3.860 18 H 0.102 0.898 19 C -0.133 4.133 20 C 0.021 3.979 21 N -0.504 5.504 22 C -0.003 4.003 23 C 0.459 3.541 24 F -0.183 7.183 25 F -0.184 7.184 26 F -0.173 7.173 27 C 0.031 3.969 28 H 0.262 0.738 29 H 0.034 0.966 30 H 0.008 0.992 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.335 0.665 34 H 0.350 0.650 35 H 0.402 0.598 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.060 0.940 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.712 -16.152 11.441 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.205 1.205 5 H -0.184 1.184 6 H -0.216 1.216 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.041 4.041 12 H 0.115 0.885 13 N -0.339 5.339 14 C 0.272 3.728 15 O -0.424 6.424 16 N -0.379 5.379 17 C 0.034 3.966 18 H 0.120 0.880 19 C -0.172 4.172 20 C -0.106 4.106 21 N -0.228 5.228 22 C -0.133 4.133 23 C 0.405 3.595 24 F -0.165 7.165 25 F -0.165 7.165 26 F -0.154 7.154 27 C -0.097 4.097 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.165 0.835 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.142 0.858 42 H 0.079 0.921 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.455 -16.344 10.645 26.852 hybrid contribution 0.803 0.692 0.980 1.444 sum 19.258 -15.652 11.625 27.404 Atomic orbital electron populations 1.69925 1.06374 1.26852 1.51380 1.25021 0.94702 0.99240 0.94567 0.86770 0.80726 0.83450 0.78375 1.20542 1.18398 1.21594 1.21176 0.89735 0.94326 1.50759 0.91315 1.19487 0.96362 0.91169 0.97162 1.21467 0.87934 1.01576 1.01545 1.21873 0.99403 0.87690 0.95111 0.88474 1.59024 1.15359 1.56085 1.03424 1.22668 0.76623 0.90998 0.82511 1.90668 1.48257 1.66512 1.36985 1.46277 1.66760 1.14373 1.10529 1.21583 0.92999 0.83354 0.98628 0.87954 1.22767 0.96195 1.01511 0.96735 1.23496 0.93915 0.95770 0.97428 1.65366 1.03990 1.41040 1.12416 1.23421 0.98538 0.99073 0.92256 1.20368 0.82721 0.81611 0.74837 1.93170 1.44519 1.84119 1.94679 1.93200 1.95311 1.94177 1.33828 1.93219 1.96174 1.49455 1.76546 1.23420 0.94425 0.95892 0.95935 0.92819 0.94774 0.97393 0.92236 0.92163 0.85318 0.83538 0.76319 0.90043 0.90387 0.88743 0.92862 0.89677 0.85838 0.92133 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.82 13.96 55.43 0.77 -27.05 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 9 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 10 C -0.09 -1.59 4.78 -26.73 -0.13 -1.71 16 11 C 0.08 1.09 3.15 -68.87 -0.22 0.88 16 12 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 13 N -0.81 -12.07 8.44 -5.65 -0.05 -12.12 16 14 C 0.49 6.61 7.07 -10.99 -0.08 6.54 16 15 O -0.55 -9.07 15.93 5.55 0.09 -8.98 16 16 N -0.73 -7.36 5.03 -52.47 -0.26 -7.63 16 17 C 0.14 1.30 3.38 -66.55 -0.22 1.08 16 18 H 0.10 1.18 7.60 -51.93 -0.39 0.78 16 19 C -0.13 -1.13 6.79 -25.35 -0.17 -1.30 16 20 C 0.02 0.15 5.20 -2.18 -0.01 0.14 16 21 N -0.50 -3.66 5.29 -229.83 -1.22 -4.87 16 22 C 0.00 -0.01 4.94 -3.83 -0.02 -0.03 16 23 C 0.46 3.39 3.27 37.16 0.12 3.51 16 24 F -0.18 -1.50 14.53 2.25 0.03 -1.46 16 25 F -0.18 -1.42 17.32 2.25 0.04 -1.38 16 26 F -0.17 -1.57 17.24 2.25 0.04 -1.53 16 27 C 0.03 0.22 6.21 -2.09 -0.01 0.20 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.03 0.81 6.81 -51.93 -0.35 0.46 16 30 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.34 4.26 9.06 -39.29 -0.36 3.90 16 34 H 0.35 5.39 8.58 -39.29 -0.34 5.05 16 35 H 0.40 3.28 8.36 -40.82 -0.34 2.94 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 38 H 0.09 0.72 6.73 -51.93 -0.35 0.37 16 39 H 0.05 0.34 7.82 -51.93 -0.41 -0.06 16 40 H 0.09 0.36 7.88 -51.92 -0.41 -0.05 16 41 H 0.12 0.52 8.13 -51.93 -0.42 0.10 16 42 H 0.06 0.35 7.60 -51.93 -0.39 -0.05 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -33.03 360.89 -7.34 -40.37 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.27 Total: 6.33 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.28 Total: -4.02 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.75 Total: -51.67 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.11 Total: -4.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.03 -7.34 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578353504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.803 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds