Wall clock time and date at job start Tue Mar 31 2020 14:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47002 * 54.99412 * 11 10 9 13 13 N 1.46901 * 109.46962 * 294.99781 * 11 10 9 14 14 C 1.50698 * 109.47281 * 174.99629 * 11 10 9 15 15 O 1.21287 * 119.99689 * 99.99873 * 14 11 10 16 16 N 1.34770 * 120.00327 * 279.99983 * 14 11 10 17 17 C 1.46499 * 120.00541 * 179.97438 * 16 14 11 18 18 H 1.08998 * 110.28584 * 325.70656 * 17 16 14 19 19 C 1.54263 * 110.32086 * 87.82643 * 17 16 14 20 20 C 1.54378 * 105.05777 * 118.89957 * 19 17 16 21 21 N 1.48560 * 104.59601 * 23.85469 * 20 19 17 22 22 C 1.46901 * 111.00128 * 200.95936 * 21 20 19 23 23 C 1.52995 * 109.47218 * 290.12641 * 22 21 20 24 24 F 1.39904 * 109.47538 * 59.99639 * 23 22 21 25 25 F 1.39902 * 109.47389 * 179.97438 * 23 22 21 26 26 F 1.39901 * 109.47024 * 299.99894 * 23 22 21 27 27 C 1.48721 * 104.28562 * 320.56937 * 21 20 19 28 28 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 30 30 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 31 31 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 32 32 H 1.08996 * 109.47407 * 59.99213 * 10 9 7 33 33 H 1.00903 * 110.99982 * 176.03975 * 13 11 10 34 34 H 1.00900 * 111.00110 * 300.00154 * 13 11 10 35 35 H 0.97004 * 119.99761 * 0.02562 * 16 14 11 36 36 H 1.08999 * 110.32544 * 237.79456 * 19 17 16 37 37 H 1.09005 * 110.32585 * 359.90472 * 19 17 16 38 38 H 1.09006 * 110.40958 * 142.62908 * 20 19 17 39 39 H 1.08998 * 110.41291 * 265.07140 * 20 19 17 40 40 H 1.09010 * 109.46950 * 50.12324 * 22 21 20 41 41 H 1.08993 * 109.47511 * 170.12273 * 22 21 20 42 42 H 1.08995 * 110.39189 * 280.64140 * 27 21 20 43 43 H 1.09002 * 110.50816 * 158.14475 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5514 -2.6368 -0.0014 12 1 5.9148 -2.0481 0.8409 13 7 6.0410 -2.0504 -1.2561 14 6 6.0536 -4.0523 0.1211 15 8 6.4276 -4.6506 -0.8654 16 7 6.0872 -4.6535 1.3268 17 6 6.5749 -6.0298 1.4459 18 1 6.3039 -6.6047 0.5605 19 6 8.1047 -6.0408 1.6442 20 6 8.3264 -6.7108 3.0172 21 7 7.1105 -7.5371 3.2312 22 6 6.9235 -7.8393 4.6566 23 6 8.0094 -8.8133 5.1181 24 9 9.2681 -8.2339 4.9255 25 9 7.8317 -9.1007 6.4757 26 9 7.9217 -9.9956 4.3753 27 6 5.9989 -6.6950 2.7144 28 1 -0.4850 0.8401 0.0004 29 1 3.8751 -0.6798 -0.8895 30 1 3.8745 -0.6809 0.8904 31 1 3.6577 -3.1515 0.8880 32 1 3.6583 -3.1496 -0.8919 33 1 7.0476 -1.9798 -1.2537 34 1 5.7174 -2.5785 -2.0526 35 1 5.7877 -4.1752 2.1158 36 1 8.5844 -6.6226 0.8571 37 1 8.4929 -5.0222 1.6512 38 1 9.2152 -7.3415 2.9933 39 1 8.4156 -5.9561 3.7986 40 1 6.9919 -6.9181 5.2354 41 1 5.9429 -8.2907 4.8067 42 1 5.7228 -5.9382 3.4485 43 1 5.1374 -7.3130 2.4616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578353504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:29 Heat of formation + Delta-G solvation = -217.689644 kcal Electronic energy + Delta-G solvation = -27579.384159 eV Core-core repulsion = 23049.860094 eV Total energy + Delta-G solvation = -4529.524065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.06855 -48.62904 -48.52517 -41.32478 -39.80498 -36.85335 -35.78302 -34.76465 -32.81046 -32.26156 -29.94761 -29.02039 -27.93023 -25.19929 -24.21391 -22.62510 -22.37069 -21.61645 -21.13689 -19.56487 -19.44142 -18.98598 -18.52770 -18.21421 -17.38111 -17.16059 -16.77016 -16.24491 -15.99656 -15.65978 -15.53076 -15.42253 -15.21432 -15.06861 -14.97201 -14.74621 -14.72847 -14.68147 -14.55591 -14.21512 -13.96189 -13.76253 -13.46885 -12.96562 -12.79907 -12.74323 -12.58714 -12.48792 -12.38622 -11.98652 -11.82401 -11.72786 -11.57631 -11.27619 -11.08999 -10.69282 -10.15950 -9.83443 -9.62736 -8.23495 -6.26516 1.40915 1.45138 1.51573 1.58713 1.69447 2.07756 2.43033 2.60239 2.84005 3.07130 3.13405 3.31490 3.46629 3.58513 3.70604 3.88299 3.98291 4.10692 4.13848 4.18079 4.26138 4.30062 4.33050 4.54107 4.73795 4.74518 4.84892 4.90386 4.93838 5.04986 5.17169 5.26258 5.52898 5.56274 5.61996 5.67954 5.76556 6.09603 6.34340 6.45287 6.55035 6.82715 7.17210 7.38190 8.93355 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002280 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.751307 B =12279.266790 C =12986.222457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.244 1.244 6 H -0.292 1.292 7 C -0.530 4.530 8 H 0.029 0.971 9 C 0.002 3.998 10 C -0.079 4.079 11 C 0.084 3.916 12 H 0.122 0.878 13 N -0.821 5.821 14 C 0.490 3.510 15 O -0.580 6.580 16 N -0.709 5.709 17 C 0.138 3.862 18 H 0.076 0.924 19 C -0.128 4.128 20 C 0.028 3.972 21 N -0.518 5.518 22 C 0.001 3.999 23 C 0.457 3.543 24 F -0.189 7.189 25 F -0.186 7.186 26 F -0.186 7.186 27 C 0.039 3.961 28 H 0.264 0.736 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.348 0.652 34 H 0.345 0.655 35 H 0.415 0.585 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.140 0.860 42 H 0.082 0.918 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.432 -15.276 13.120 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.168 1.168 6 H -0.218 1.218 7 C -0.568 4.568 8 H 0.047 0.953 9 C -0.036 4.036 10 C -0.117 4.117 11 C -0.031 4.031 12 H 0.140 0.860 13 N -0.350 5.350 14 C 0.275 3.725 15 O -0.460 6.460 16 N -0.362 5.362 17 C 0.032 3.968 18 H 0.095 0.905 19 C -0.168 4.168 20 C -0.100 4.100 21 N -0.243 5.243 22 C -0.129 4.129 23 C 0.402 3.598 24 F -0.171 7.171 25 F -0.168 7.168 26 F -0.168 7.168 27 C -0.089 4.089 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.158 0.842 42 H 0.100 0.900 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 20.199 -15.487 12.371 28.300 hybrid contribution 0.228 0.305 0.466 0.602 sum 20.428 -15.182 12.837 28.506 Atomic orbital electron populations 1.70087 1.08420 1.27997 1.53224 1.26020 0.95543 1.03606 0.94310 0.85631 0.79577 0.78049 0.79227 1.18860 1.16763 1.21784 1.21583 0.92594 0.92820 1.49796 0.95288 1.19378 0.92770 0.94140 0.97297 1.21257 0.90827 0.98542 1.01084 1.21690 0.96583 0.88902 0.95961 0.86009 1.59020 1.16507 1.56076 1.03349 1.22384 0.76555 0.90523 0.83006 1.90665 1.49993 1.66999 1.38330 1.46119 1.65429 1.14662 1.09966 1.21595 0.93820 0.82452 0.98937 0.90541 1.22680 0.95304 1.01458 0.97319 1.23431 0.93807 0.95886 0.96863 1.65312 1.03925 1.41244 1.13783 1.23509 0.98475 0.99535 0.91368 1.20680 0.83018 0.81507 0.74590 1.93159 1.45128 1.84103 1.94695 1.93193 1.95312 1.94229 1.34047 1.93192 1.96237 1.50445 1.76885 1.23351 0.94161 0.96236 0.95111 0.92718 0.95439 0.95826 0.91228 0.94327 0.83827 0.84129 0.74725 0.91315 0.90358 0.89346 0.91385 0.87508 0.84199 0.89977 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.84 13.96 21.45 0.30 -59.54 16 2 C 0.00 0.07 5.47 84.66 0.46 0.54 16 3 Si 0.95 43.82 27.47 68.60 1.88 45.70 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 8 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 9 C 0.00 0.07 3.93 29.85 0.12 0.19 16 10 C -0.08 -2.78 4.78 30.59 0.15 -2.64 16 11 C 0.08 2.27 3.15 44.17 0.14 2.41 16 12 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 13 N -0.82 -23.03 8.44 -171.80 -1.45 -24.48 16 14 C 0.49 12.56 7.07 87.66 0.62 13.18 16 15 O -0.58 -18.92 15.93 -3.05 -0.05 -18.97 16 16 N -0.71 -12.81 5.03 -438.30 -2.21 -15.02 16 17 C 0.14 2.35 3.38 45.89 0.16 2.51 16 18 H 0.08 1.75 7.60 -2.39 -0.02 1.73 16 19 C -0.13 -2.00 6.79 31.49 0.21 -1.79 16 20 C 0.03 0.34 5.20 86.45 0.45 0.79 16 21 N -0.52 -6.36 5.29 -881.06 -4.66 -11.03 16 22 C 0.00 0.01 4.94 86.30 0.43 0.43 16 23 C 0.46 5.97 3.27 71.98 0.24 6.21 16 24 F -0.19 -2.80 14.53 44.97 0.65 -2.15 16 25 F -0.19 -2.58 17.32 44.97 0.78 -1.80 16 26 F -0.19 -3.21 17.24 44.97 0.78 -2.44 16 27 C 0.04 0.45 6.21 86.42 0.54 0.98 16 28 H 0.26 15.46 8.31 -92.70 -0.77 14.68 16 29 H 0.03 1.25 6.81 -2.39 -0.02 1.24 16 30 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.35 8.15 9.06 -89.69 -0.81 7.33 16 34 H 0.35 10.38 8.58 -89.69 -0.77 9.61 16 35 H 0.42 5.37 8.36 -92.71 -0.78 4.60 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.22 7.95 -2.38 -0.02 1.20 16 38 H 0.09 1.23 6.73 -2.38 -0.02 1.21 16 39 H 0.07 0.66 7.82 -2.39 -0.02 0.64 16 40 H 0.11 0.49 7.88 -2.38 -0.02 0.47 16 41 H 0.14 0.74 8.13 -2.39 -0.02 0.72 16 42 H 0.08 0.61 7.60 -2.39 -0.02 0.60 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.69 360.89 -1.57 -74.26 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -1.35 Total: 22.27 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 3.75 Total: -6.81 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -8.02 Total: -110.06 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 9 Polarization: -8.60 SS G_CDS: 2.21 Total: -6.39 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -72.69 -1.57 -74.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578353504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.428 kcal (2) G-P(sol) polarization free energy of solvation -72.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds