Wall clock time and date at job start Tue Mar 31 2020 14:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99881 * 2 1 4 4 H 1.48499 * 109.46796 * 239.99655 * 3 2 1 5 5 H 1.48492 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46743 * 120.00264 * 3 2 1 7 7 C 1.37877 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47593 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47522 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46732 * 305.00063 * 11 10 9 13 13 N 1.46895 * 109.46865 * 64.99842 * 11 10 9 14 14 C 1.50700 * 109.46992 * 184.99976 * 11 10 9 15 15 O 1.21287 * 119.99863 * 259.99638 * 14 11 10 16 16 N 1.34771 * 120.00365 * 80.00137 * 14 11 10 17 17 C 1.46495 * 120.00262 * 179.97438 * 16 14 11 18 18 H 1.09005 * 110.76541 * 328.19861 * 17 16 14 19 19 C 1.55398 * 110.84661 * 91.46275 * 17 16 14 20 20 C 1.54916 * 101.74107 * 153.86291 * 19 17 16 21 21 N 1.47843 * 104.79337 * 323.02060 * 20 19 17 22 22 C 1.46904 * 110.99640 * 146.36598 * 21 20 19 23 23 C 1.52996 * 109.47327 * 69.15576 * 22 21 20 24 24 F 1.39906 * 109.47351 * 59.99698 * 23 22 21 25 25 F 1.39897 * 109.47510 * 180.02562 * 23 22 21 26 26 F 1.39896 * 109.47106 * 299.99957 * 23 22 21 27 27 C 1.47439 * 108.57210 * 24.09642 * 21 20 19 28 28 H 0.97006 * 119.99947 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47225 * 59.99963 * 9 7 2 30 30 H 1.09001 * 109.47156 * 300.00519 * 9 7 2 31 31 H 1.09004 * 109.47309 * 59.99472 * 10 9 7 32 32 H 1.09001 * 109.46851 * 300.00164 * 10 9 7 33 33 H 1.00896 * 111.00554 * 60.00197 * 13 11 10 34 34 H 1.00900 * 111.00041 * 183.95424 * 13 11 10 35 35 H 0.96997 * 119.99707 * 359.97438 * 16 14 11 36 36 H 1.08995 * 110.87020 * 35.77947 * 19 17 16 37 37 H 1.08997 * 111.05714 * 272.03179 * 19 17 16 38 38 H 1.08996 * 110.37177 * 204.18825 * 20 19 17 39 39 H 1.09002 * 110.37261 * 81.84838 * 20 19 17 40 40 H 1.09006 * 109.46849 * 189.15426 * 22 21 20 41 41 H 1.08995 * 109.46868 * 309.15239 * 22 21 20 42 42 H 1.09002 * 109.88998 * 118.41597 * 27 21 20 43 43 H 1.09003 * 109.88733 * 239.44258 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7879 -5.0072 0.8404 13 7 0.7290 -5.1180 -1.2567 14 6 2.4549 -6.1298 0.1226 15 8 2.7870 -6.7531 -0.8634 16 7 2.9574 -6.4593 1.3290 17 6 3.9044 -7.5705 1.4494 18 1 3.6959 -8.3384 0.7044 19 6 5.3685 -7.0656 1.3222 20 6 6.1442 -8.1436 2.1198 21 7 5.2562 -8.4884 3.2505 22 6 5.3887 -9.9065 3.6103 23 6 6.7662 -10.1488 4.2305 24 9 6.9058 -9.3614 5.3785 25 9 6.8926 -11.4994 4.5727 26 9 7.7600 -9.8072 3.3071 27 6 3.8679 -8.1667 2.8723 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 1.3490 -5.1021 -2.0525 34 1 0.1646 -5.9544 -1.2548 35 1 2.6920 -5.9606 2.1175 36 1 5.4818 -6.0835 1.7812 37 1 5.6870 -7.0464 0.2800 38 1 7.0869 -7.7386 2.4874 39 1 6.3238 -9.0202 1.4973 40 1 4.6144 -10.1727 4.3298 41 1 5.2800 -10.5200 2.7159 42 1 3.2622 -9.0729 2.8793 43 1 3.4532 -7.4383 3.5691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578353505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:32 Heat of formation + Delta-G solvation = -195.606584 kcal Electronic energy + Delta-G solvation = -27539.511463 eV Core-core repulsion = 23010.944991 eV Total energy + Delta-G solvation = -4528.566472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.43959 -48.00451 -47.86359 -40.33933 -39.01472 -35.36169 -34.81983 -32.82275 -32.04924 -30.13531 -29.33961 -28.08911 -26.19924 -23.84962 -23.53206 -21.72169 -21.39838 -20.72789 -19.87253 -18.92002 -18.81248 -18.02990 -17.23694 -16.82600 -16.22242 -15.90581 -15.55055 -15.07354 -14.87796 -14.79174 -14.64264 -14.49848 -14.38388 -14.32816 -14.06841 -14.04560 -13.82435 -13.56134 -13.49407 -13.05105 -12.49266 -12.35752 -12.29468 -12.06589 -11.82513 -11.70201 -11.56539 -11.20909 -10.88810 -10.70662 -10.59715 -10.19073 -9.82571 -9.39990 -9.20154 -9.10007 -9.02853 -8.38936 -8.23665 -5.95146 -3.97472 2.26896 2.66386 2.91739 3.22536 3.35402 3.39913 3.40057 3.42443 3.60344 3.92399 4.14980 4.31815 4.48900 4.51762 4.66341 4.68000 4.79349 4.82042 4.92546 5.06849 5.13332 5.37961 5.40316 5.47933 5.53715 5.65952 5.78645 5.82238 6.13046 6.19361 6.34381 6.41331 6.61527 7.05494 7.30614 7.51384 7.73357 7.75375 7.93875 8.11012 8.21972 8.46561 9.10274 9.65804 11.15667 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002262 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.542243 B =12372.880011 C =13243.831618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.807 5.807 14 C 0.486 3.514 15 O -0.553 6.553 16 N -0.721 5.721 17 C 0.124 3.876 18 H 0.096 0.904 19 C -0.141 4.141 20 C 0.035 3.965 21 N -0.520 5.520 22 C 0.002 3.998 23 C 0.458 3.542 24 F -0.173 7.173 25 F -0.185 7.185 26 F -0.183 7.183 27 C 0.040 3.960 28 H 0.260 0.740 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.348 0.652 34 H 0.334 0.666 35 H 0.406 0.594 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.034 -23.510 8.729 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.272 3.728 15 O -0.431 6.431 16 N -0.374 5.374 17 C 0.017 3.983 18 H 0.114 0.886 19 C -0.180 4.180 20 C -0.092 4.092 21 N -0.244 5.244 22 C -0.128 4.128 23 C 0.404 3.596 24 F -0.154 7.154 25 F -0.167 7.167 26 F -0.164 7.164 27 C -0.088 4.088 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.241 0.759 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.139 0.861 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.907 -22.856 8.660 26.373 hybrid contribution 1.012 -0.331 -0.238 1.091 sum 10.919 -23.187 8.422 26.977 Atomic orbital electron populations 1.69962 1.05953 1.26555 1.50714 1.24989 0.94808 0.99056 0.95447 0.86711 0.79615 0.83411 0.78545 1.20319 1.21332 1.20347 1.21233 0.92853 0.91323 1.50772 0.93045 1.19008 0.93541 0.89809 0.98188 1.21658 0.98850 0.92118 1.00687 1.21853 0.93499 0.93218 0.95133 0.88361 1.58988 1.26914 1.44265 1.03272 1.22838 0.81894 0.85626 0.82448 1.90646 1.61253 1.54115 1.37054 1.46098 1.46204 1.34336 1.10728 1.22124 0.89323 0.90144 0.96729 0.88606 1.23207 0.94044 0.99543 1.01214 1.23334 0.97127 0.98450 0.90316 1.63534 1.06962 1.15089 1.38839 1.23484 0.93439 0.92841 1.03024 1.20396 0.88532 0.73630 0.77086 1.93219 1.96501 1.74335 1.51343 1.93192 1.96634 1.34122 1.92711 1.93186 1.65216 1.91963 1.66057 1.23059 0.88416 1.01471 0.95828 0.93025 0.94690 0.96889 0.92780 0.92875 0.83800 0.85473 0.75897 0.89591 0.89843 0.88886 0.92477 0.86083 0.89831 0.91306 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 10 C -0.09 -1.83 4.78 -26.73 -0.13 -1.96 16 11 C 0.08 1.24 3.15 -68.87 -0.22 1.02 16 12 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 13 N -0.81 -12.99 8.44 -5.66 -0.05 -13.04 16 14 C 0.49 6.95 7.07 -10.99 -0.08 6.87 16 15 O -0.55 -9.42 15.90 5.55 0.09 -9.34 16 16 N -0.72 -7.76 5.18 -51.91 -0.27 -8.03 16 17 C 0.12 1.15 3.32 -65.97 -0.22 0.94 16 18 H 0.10 1.02 7.55 -51.93 -0.39 0.63 16 19 C -0.14 -1.34 6.77 -24.45 -0.17 -1.50 16 20 C 0.03 0.28 5.09 -2.29 -0.01 0.27 16 21 N -0.52 -3.89 5.09 -231.25 -1.18 -5.07 16 22 C 0.00 0.01 4.69 -3.82 -0.02 0.00 16 23 C 0.46 3.49 3.26 37.16 0.12 3.61 16 24 F -0.17 -1.61 17.24 2.25 0.04 -1.57 16 25 F -0.19 -1.45 17.32 2.25 0.04 -1.41 16 26 F -0.18 -1.58 14.70 2.25 0.03 -1.55 16 27 C 0.04 0.28 6.61 -2.84 -0.02 0.26 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.35 5.73 8.58 -39.29 -0.34 5.39 16 34 H 0.33 4.61 9.06 -39.29 -0.36 4.26 16 35 H 0.41 3.67 8.37 -40.82 -0.34 3.33 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.79 7.52 -51.93 -0.39 0.40 16 39 H 0.06 0.42 7.36 -51.93 -0.38 0.04 16 40 H 0.12 0.49 8.03 -51.93 -0.42 0.07 16 41 H 0.08 0.38 7.85 -51.93 -0.41 -0.03 16 42 H 0.07 0.37 7.55 -51.93 -0.39 -0.02 16 43 H 0.09 0.63 7.71 -51.93 -0.40 0.23 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -32.49 364.41 -7.66 -40.15 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.30 Total: 6.95 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.28 Total: -3.20 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.76 Total: -52.09 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.11 Total: -4.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.49 -7.66 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578353505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.455 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds