Wall clock time and date at job start Tue Mar 31 2020 14:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99881 * 2 1 4 4 H 1.48499 * 109.46796 * 239.99655 * 3 2 1 5 5 H 1.48492 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46743 * 120.00264 * 3 2 1 7 7 C 1.37877 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47593 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47522 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46732 * 305.00063 * 11 10 9 13 13 N 1.46895 * 109.46865 * 64.99842 * 11 10 9 14 14 C 1.50700 * 109.46992 * 184.99976 * 11 10 9 15 15 O 1.21287 * 119.99863 * 259.99638 * 14 11 10 16 16 N 1.34771 * 120.00365 * 80.00137 * 14 11 10 17 17 C 1.46495 * 120.00262 * 179.97438 * 16 14 11 18 18 H 1.09005 * 110.76541 * 328.19861 * 17 16 14 19 19 C 1.55398 * 110.84661 * 91.46275 * 17 16 14 20 20 C 1.54916 * 101.74107 * 153.86291 * 19 17 16 21 21 N 1.47843 * 104.79337 * 323.02060 * 20 19 17 22 22 C 1.46904 * 110.99640 * 146.36598 * 21 20 19 23 23 C 1.52996 * 109.47327 * 69.15576 * 22 21 20 24 24 F 1.39906 * 109.47351 * 59.99698 * 23 22 21 25 25 F 1.39897 * 109.47510 * 180.02562 * 23 22 21 26 26 F 1.39896 * 109.47106 * 299.99957 * 23 22 21 27 27 C 1.47439 * 108.57210 * 24.09642 * 21 20 19 28 28 H 0.97006 * 119.99947 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47225 * 59.99963 * 9 7 2 30 30 H 1.09001 * 109.47156 * 300.00519 * 9 7 2 31 31 H 1.09004 * 109.47309 * 59.99472 * 10 9 7 32 32 H 1.09001 * 109.46851 * 300.00164 * 10 9 7 33 33 H 1.00896 * 111.00554 * 60.00197 * 13 11 10 34 34 H 1.00900 * 111.00041 * 183.95424 * 13 11 10 35 35 H 0.96997 * 119.99707 * 359.97438 * 16 14 11 36 36 H 1.08995 * 110.87020 * 35.77947 * 19 17 16 37 37 H 1.08997 * 111.05714 * 272.03179 * 19 17 16 38 38 H 1.08996 * 110.37177 * 204.18825 * 20 19 17 39 39 H 1.09002 * 110.37261 * 81.84838 * 20 19 17 40 40 H 1.09006 * 109.46849 * 189.15426 * 22 21 20 41 41 H 1.08995 * 109.46868 * 309.15239 * 22 21 20 42 42 H 1.09002 * 109.88998 * 118.41597 * 27 21 20 43 43 H 1.09003 * 109.88733 * 239.44258 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7879 -5.0072 0.8404 13 7 0.7290 -5.1180 -1.2567 14 6 2.4549 -6.1298 0.1226 15 8 2.7870 -6.7531 -0.8634 16 7 2.9574 -6.4593 1.3290 17 6 3.9044 -7.5705 1.4494 18 1 3.6959 -8.3384 0.7044 19 6 5.3685 -7.0656 1.3222 20 6 6.1442 -8.1436 2.1198 21 7 5.2562 -8.4884 3.2505 22 6 5.3887 -9.9065 3.6103 23 6 6.7662 -10.1488 4.2305 24 9 6.9058 -9.3614 5.3785 25 9 6.8926 -11.4994 4.5727 26 9 7.7600 -9.8072 3.3071 27 6 3.8679 -8.1667 2.8723 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 1.3490 -5.1021 -2.0525 34 1 0.1646 -5.9544 -1.2548 35 1 2.6920 -5.9606 2.1175 36 1 5.4818 -6.0835 1.7812 37 1 5.6870 -7.0464 0.2800 38 1 7.0869 -7.7386 2.4874 39 1 6.3238 -9.0202 1.4973 40 1 4.6144 -10.1727 4.3298 41 1 5.2800 -10.5200 2.7159 42 1 3.2622 -9.0729 2.8793 43 1 3.4532 -7.4383 3.5691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578353505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:31 Heat of formation + Delta-G solvation = -220.752523 kcal Electronic energy + Delta-G solvation = -27540.601873 eV Core-core repulsion = 23010.944991 eV Total energy + Delta-G solvation = -4529.656882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.04878 -48.60987 -48.50421 -41.30742 -39.86163 -36.81001 -35.76772 -34.79535 -32.77931 -31.90777 -29.99650 -28.92280 -27.75158 -25.37583 -24.19641 -22.67097 -22.27847 -21.93159 -21.15984 -19.52657 -19.41705 -18.82374 -18.47325 -18.02240 -17.66067 -16.91511 -16.60319 -16.44896 -15.87033 -15.76194 -15.50396 -15.41986 -15.13662 -15.03046 -14.96062 -14.78055 -14.69816 -14.61181 -14.26229 -14.19838 -13.81319 -13.75533 -13.41054 -13.08760 -12.93317 -12.76986 -12.54305 -12.47558 -12.33359 -12.24335 -11.96325 -11.73254 -11.62047 -11.24082 -10.98428 -10.47259 -10.13378 -9.67169 -9.58745 -8.12693 -6.22656 1.42595 1.45024 1.50064 1.53141 1.71635 2.10967 2.45392 2.53179 2.86494 3.08163 3.20406 3.30065 3.54938 3.60138 3.63715 3.87899 3.94051 4.12334 4.15014 4.19477 4.22797 4.30304 4.34852 4.52092 4.76829 4.80591 4.85345 4.91416 4.97208 5.03271 5.27900 5.46981 5.57688 5.58632 5.62978 5.86758 6.00582 6.12398 6.32018 6.45531 6.55822 6.96272 7.15015 7.45385 8.98190 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002262 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.542243 B =12372.880011 C =13243.831618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.081 4.081 11 C 0.085 3.915 12 H 0.113 0.887 13 N -0.820 5.820 14 C 0.493 3.507 15 O -0.581 6.581 16 N -0.705 5.705 17 C 0.123 3.877 18 H 0.087 0.913 19 C -0.141 4.141 20 C 0.042 3.958 21 N -0.530 5.530 22 C 0.005 3.995 23 C 0.455 3.545 24 F -0.185 7.185 25 F -0.187 7.187 26 F -0.191 7.191 27 C 0.048 3.952 28 H 0.262 0.738 29 H 0.005 0.995 30 H -0.005 1.005 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.344 0.656 34 H 0.347 0.653 35 H 0.416 0.584 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.144 0.856 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.661 -24.345 9.858 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.119 4.119 11 C -0.030 4.030 12 H 0.130 0.870 13 N -0.349 5.349 14 C 0.279 3.721 15 O -0.461 6.461 16 N -0.357 5.357 17 C 0.016 3.984 18 H 0.105 0.895 19 C -0.180 4.180 20 C -0.085 4.085 21 N -0.254 5.254 22 C -0.125 4.125 23 C 0.401 3.599 24 F -0.166 7.166 25 F -0.168 7.168 26 F -0.173 7.173 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.023 0.977 30 H 0.013 0.987 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.254 0.746 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.162 0.838 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.547 -23.711 9.832 27.751 hybrid contribution 0.831 -0.106 -0.568 1.012 sum 11.379 -23.816 9.264 27.973 Atomic orbital electron populations 1.70093 1.07584 1.27540 1.51742 1.25884 0.95689 1.02958 0.95052 0.85623 0.78359 0.78756 0.79020 1.19684 1.20989 1.19098 1.21712 0.93334 0.92798 1.50341 0.92678 1.18823 0.93896 0.91309 0.95763 1.21376 0.97671 0.92156 1.00731 1.21641 0.93792 0.92037 0.95564 0.86969 1.58962 1.27284 1.45344 1.03321 1.22331 0.81619 0.85116 0.83077 1.90642 1.62141 1.55064 1.38232 1.45959 1.45426 1.34399 1.09947 1.22214 0.88529 0.89268 0.98354 0.89523 1.23139 0.94567 0.99740 1.00538 1.23229 0.96771 0.98135 0.90415 1.63498 1.07033 1.16493 1.38424 1.23601 0.92639 0.92029 1.04206 1.20726 0.89244 0.73312 0.76656 1.93193 1.96622 1.74700 1.52133 1.93187 1.96695 1.34229 1.92732 1.93169 1.65829 1.92030 1.66263 1.23031 0.88469 1.02523 0.93875 0.92949 0.97682 0.98661 0.91362 0.94125 0.84201 0.83989 0.74628 0.90444 0.91315 0.89545 0.91730 0.83820 0.88056 0.89021 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.04 2.00 4.86 29.85 0.15 2.14 16 10 C -0.08 -3.12 4.78 30.59 0.15 -2.97 16 11 C 0.09 2.62 3.15 44.17 0.14 2.76 16 12 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 13 N -0.82 -26.38 8.44 -171.81 -1.45 -27.83 16 14 C 0.49 13.53 7.07 87.66 0.62 14.15 16 15 O -0.58 -19.38 15.90 -3.05 -0.05 -19.43 16 16 N -0.71 -13.89 5.18 -436.53 -2.26 -16.15 16 17 C 0.12 2.06 3.32 46.27 0.15 2.21 16 18 H 0.09 1.69 7.55 -2.38 -0.02 1.67 16 19 C -0.14 -2.54 6.77 32.07 0.22 -2.32 16 20 C 0.04 0.61 5.09 86.78 0.44 1.05 16 21 N -0.53 -6.62 5.09 -885.52 -4.50 -11.13 16 22 C 0.00 0.04 4.69 86.30 0.40 0.45 16 23 C 0.46 6.14 3.26 71.98 0.23 6.38 16 24 F -0.18 -3.21 17.24 44.97 0.78 -2.43 16 25 F -0.19 -2.62 17.32 44.97 0.78 -1.84 16 26 F -0.19 -3.08 14.70 44.97 0.66 -2.42 16 27 C 0.05 0.52 6.61 86.65 0.57 1.10 16 28 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 29 H 0.00 0.27 7.75 -2.38 -0.02 0.25 16 30 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.34 11.46 8.58 -89.70 -0.77 10.69 16 34 H 0.35 9.41 9.06 -89.69 -0.81 8.60 16 35 H 0.42 6.54 8.37 -92.71 -0.78 5.77 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.39 7.52 -2.39 -0.02 1.37 16 39 H 0.06 0.85 7.36 -2.39 -0.02 0.83 16 40 H 0.14 0.62 8.03 -2.38 -0.02 0.60 16 41 H 0.10 0.57 7.85 -2.39 -0.02 0.55 16 42 H 0.09 0.62 7.55 -2.39 -0.02 0.60 16 43 H 0.10 1.01 7.71 -2.39 -0.02 0.99 16 Total: -1.00 -70.26 364.41 -1.26 -71.53 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.29 Total: 24.21 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 3.77 Total: -4.73 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -7.93 Total: -111.06 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 2.21 Total: -6.69 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -70.26 -1.26 -71.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578353505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.226 kcal (2) G-P(sol) polarization free energy of solvation -70.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds