Wall clock time and date at job start Tue Mar 31 2020 14:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99915 * 2 1 4 4 H 1.48502 * 109.46766 * 270.00165 * 3 2 1 5 5 H 1.48501 * 109.47295 * 29.99698 * 3 2 1 6 6 H 1.48501 * 109.47159 * 150.00054 * 3 2 1 7 7 C 1.37877 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99605 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00243 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47610 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46800 * 54.99947 * 11 10 9 13 13 N 1.46899 * 109.47376 * 295.00479 * 11 10 9 14 14 C 1.50703 * 109.47428 * 174.99781 * 11 10 9 15 15 O 1.21276 * 119.99414 * 99.99986 * 14 11 10 16 16 N 1.34777 * 119.99937 * 280.00329 * 14 11 10 17 17 C 1.46500 * 119.99562 * 179.97438 * 16 14 11 18 18 H 1.08998 * 110.35549 * 32.86032 * 17 16 14 19 19 C 1.54593 * 110.30964 * 270.71481 * 17 16 14 20 20 C 1.54933 * 102.92591 * 219.13023 * 19 17 16 21 21 N 1.48538 * 103.22579 * 37.41127 * 20 19 17 22 22 C 1.46897 * 111.00123 * 200.28130 * 21 20 19 23 23 C 1.52995 * 109.47492 * 287.39971 * 22 21 20 24 24 F 1.39906 * 109.47102 * 59.99667 * 23 22 21 25 25 F 1.39900 * 109.47693 * 179.97438 * 23 22 21 26 26 F 1.39907 * 109.46784 * 300.00068 * 23 22 21 27 27 C 1.47899 * 105.82096 * 320.79703 * 21 20 19 28 28 H 0.97004 * 120.00052 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47410 * 60.00113 * 9 7 2 30 30 H 1.09006 * 109.47203 * 300.00256 * 9 7 2 31 31 H 1.09005 * 109.46705 * 59.99737 * 10 9 7 32 32 H 1.08999 * 109.46986 * 300.00523 * 10 9 7 33 33 H 1.00904 * 110.99731 * 299.99910 * 13 11 10 34 34 H 1.00905 * 111.00341 * 63.94654 * 13 11 10 35 35 H 0.96998 * 120.00179 * 359.97438 * 16 14 11 36 36 H 1.09007 * 110.72450 * 337.49014 * 19 17 16 37 37 H 1.09004 * 110.72461 * 100.76937 * 19 17 16 38 38 H 1.09007 * 110.66620 * 278.98326 * 20 19 17 39 39 H 1.08993 * 110.81619 * 155.91514 * 20 19 17 40 40 H 1.09008 * 109.47211 * 47.40082 * 22 21 20 41 41 H 1.09000 * 109.47208 * 167.39693 * 22 21 20 42 42 H 1.09004 * 109.91646 * 265.97786 * 27 21 20 43 43 H 1.09001 * 110.08341 * 144.77463 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5515 -2.6365 -0.0012 12 1 5.9155 -2.0467 0.8402 13 7 6.0403 -2.0516 -1.2569 14 6 6.0540 -4.0519 0.1228 15 8 6.4273 -4.6513 -0.8631 16 7 6.0885 -4.6515 1.3294 17 6 6.5764 -6.0276 1.4498 18 1 7.3574 -6.2187 0.7138 19 6 5.4117 -7.0277 1.2682 20 6 5.7271 -8.1215 2.3192 21 7 6.2675 -7.3461 3.4650 22 6 7.0569 -8.2058 4.3570 23 6 6.1189 -9.1280 5.1384 24 9 5.3953 -9.9238 4.2437 25 9 6.8708 -9.9472 5.9874 26 9 5.2329 -8.3566 5.8981 27 6 7.1082 -6.2835 2.8722 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6796 0.8894 30 1 3.8745 -0.6807 -0.8905 31 1 3.6579 -3.1505 -0.8897 32 1 3.6585 -3.1501 0.8903 33 1 5.7161 -2.5808 -2.0525 34 1 5.7708 -1.0822 -1.3334 35 1 5.7902 -4.1719 2.1180 36 1 4.4558 -6.5499 1.4837 37 1 5.4164 -7.4468 0.2620 38 1 6.4752 -8.8168 1.9382 39 1 4.8209 -8.6538 2.6081 40 1 7.7473 -8.8068 3.7650 41 1 7.6207 -7.5858 5.0540 42 1 8.1462 -6.6133 2.8267 43 1 7.0340 -5.3725 3.4659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578353506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:34 Heat of formation + Delta-G solvation = -217.659741 kcal Electronic energy + Delta-G solvation = -27688.693198 eV Core-core repulsion = 23159.170430 eV Total energy + Delta-G solvation = -4529.522769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.03031 -48.59479 -48.49133 -41.22977 -39.76280 -37.12693 -35.69520 -34.79893 -32.79162 -32.06234 -29.94376 -29.03447 -27.89804 -25.39110 -24.15544 -22.48252 -22.35492 -21.77567 -21.17614 -19.51639 -19.40581 -19.15853 -18.61676 -18.19347 -17.56732 -16.67444 -16.27937 -16.05979 -15.93081 -15.78429 -15.57684 -15.39704 -15.35140 -15.11173 -14.97344 -14.75790 -14.70030 -14.65924 -14.50292 -14.35146 -13.89098 -13.62201 -13.48546 -13.10935 -13.03746 -12.85774 -12.64004 -12.43109 -12.36241 -12.07439 -11.90656 -11.87650 -11.65278 -11.39871 -10.78299 -10.74058 -10.10138 -9.68607 -9.64064 -8.29308 -6.34981 1.39142 1.40713 1.52171 1.62618 1.75003 2.13629 2.36949 2.53878 2.89114 3.06469 3.10299 3.33417 3.53780 3.67947 3.76939 3.83039 4.06421 4.12045 4.18518 4.20766 4.21748 4.26161 4.35106 4.57901 4.61167 4.72911 4.76098 4.84187 4.95096 4.96266 5.08040 5.37700 5.47181 5.49818 5.60735 5.63544 5.64042 6.08358 6.25825 6.49991 6.56194 6.74005 7.26397 7.29980 8.87641 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.002479 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.903619 B =11291.635397 C =12237.893832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.235 1.235 7 C -0.535 4.535 8 H 0.025 0.975 9 C -0.006 4.006 10 C -0.118 4.118 11 C 0.080 3.920 12 H 0.121 0.879 13 N -0.830 5.830 14 C 0.528 3.472 15 O -0.570 6.570 16 N -0.711 5.711 17 C 0.136 3.864 18 H 0.090 0.910 19 C -0.136 4.136 20 C 0.032 3.968 21 N -0.525 5.525 22 C 0.004 3.996 23 C 0.454 3.546 24 F -0.192 7.192 25 F -0.187 7.187 26 F -0.187 7.187 27 C 0.042 3.958 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.023 0.977 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.344 0.656 34 H 0.354 0.646 35 H 0.415 0.585 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.143 0.857 42 H 0.087 0.913 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.600 -16.515 10.912 28.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.158 1.158 7 C -0.573 4.573 8 H 0.043 0.957 9 C -0.043 4.043 10 C -0.158 4.158 11 C -0.035 4.035 12 H 0.139 0.861 13 N -0.362 5.362 14 C 0.315 3.685 15 O -0.449 6.449 16 N -0.364 5.364 17 C 0.031 3.969 18 H 0.108 0.892 19 C -0.175 4.175 20 C -0.095 4.095 21 N -0.250 5.250 22 C -0.126 4.126 23 C 0.400 3.600 24 F -0.173 7.173 25 F -0.168 7.168 26 F -0.169 7.169 27 C -0.085 4.085 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.252 0.748 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.161 0.839 42 H 0.106 0.894 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.045 -16.798 10.840 29.028 hybrid contribution -1.481 0.358 -0.376 1.569 sum 19.564 -16.441 10.464 27.614 Atomic orbital electron populations 1.70088 1.08617 1.28238 1.52563 1.26108 0.95621 1.03874 0.93981 0.85590 0.79800 0.77621 0.79200 1.19330 1.21506 1.15763 1.21459 0.92328 0.92845 1.50643 0.95680 1.19500 0.93674 0.93929 0.97224 1.22005 0.93699 0.98598 1.01448 1.21454 0.93104 0.92651 0.96328 0.86146 1.58771 1.66429 1.07635 1.03341 1.20713 0.76341 0.88417 0.83078 1.90628 1.49069 1.66863 1.38317 1.45981 1.65907 1.14884 1.09604 1.21791 0.96225 0.81098 0.97801 0.89187 1.22908 0.99027 0.96384 0.99199 1.23485 1.01190 0.95320 0.89504 1.64629 1.32460 1.11143 1.16792 1.23520 0.93442 0.96720 0.98873 1.20789 0.80801 0.80074 0.78362 1.93157 1.80034 1.76301 1.67845 1.93185 1.76083 1.74739 1.72827 1.93195 1.71141 1.75070 1.77466 1.23104 0.96354 0.96301 0.92719 0.92545 0.94899 0.95864 0.94198 0.91819 0.84267 0.83088 0.74815 0.91487 0.90959 0.91187 0.89550 0.87498 0.83880 0.89436 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 2 C 0.00 0.04 5.47 84.65 0.46 0.50 16 3 Si 0.96 42.26 27.47 68.60 1.88 44.15 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.23 -9.18 6.54 99.48 0.65 -8.53 16 7 C -0.53 -29.88 9.66 25.60 0.25 -29.63 16 8 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 9 C -0.01 -0.25 3.81 29.85 0.11 -0.13 16 10 C -0.12 -4.19 4.78 30.59 0.15 -4.05 16 11 C 0.08 2.27 3.21 44.17 0.14 2.41 16 12 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 13 N -0.83 -24.14 8.94 -171.80 -1.54 -25.68 16 14 C 0.53 14.84 7.08 87.66 0.62 15.46 16 15 O -0.57 -19.88 15.90 -3.02 -0.05 -19.93 16 16 N -0.71 -14.52 5.06 -438.38 -2.22 -16.73 16 17 C 0.14 2.36 3.34 45.87 0.15 2.51 16 18 H 0.09 1.77 7.56 -2.39 -0.02 1.75 16 19 C -0.14 -2.59 6.78 31.80 0.22 -2.38 16 20 C 0.03 0.48 5.41 86.65 0.47 0.95 16 21 N -0.53 -6.77 5.17 -883.01 -4.56 -11.33 16 22 C 0.00 0.04 4.82 86.30 0.42 0.45 16 23 C 0.45 6.44 3.28 71.98 0.24 6.68 16 24 F -0.19 -3.24 14.67 44.97 0.66 -2.58 16 25 F -0.19 -2.69 17.32 44.97 0.78 -1.91 16 26 F -0.19 -3.54 17.24 44.97 0.78 -2.76 16 27 C 0.04 0.45 6.43 86.45 0.56 1.01 16 28 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 30 H 0.02 0.94 6.30 -2.38 -0.02 0.92 16 31 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.34 10.62 8.58 -89.69 -0.77 9.85 16 34 H 0.35 9.73 7.55 -89.69 -0.68 9.05 16 35 H 0.41 6.81 8.35 -92.71 -0.77 6.04 16 36 H 0.07 1.54 8.06 -2.38 -0.02 1.52 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.07 0.81 7.81 -2.38 -0.02 0.79 16 39 H 0.09 1.47 6.73 -2.39 -0.02 1.45 16 40 H 0.11 0.47 7.83 -2.38 -0.02 0.46 16 41 H 0.14 0.61 8.08 -2.39 -0.02 0.59 16 42 H 0.09 0.55 7.77 -2.39 -0.02 0.53 16 43 H 0.11 0.97 7.65 -2.39 -0.02 0.96 16 Total: -1.00 -72.60 358.87 -1.40 -73.99 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -1.21 Total: 28.17 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 3.78 Total: -6.22 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -8.02 Total: -112.91 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.05 Total: -19.93 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 2.21 Total: -7.25 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.15 kcal Total: -72.60 -1.40 -73.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578353506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.667 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds