Wall clock time and date at job start Tue Mar 31 2020 13:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99832 * 2 1 4 4 O 1.21286 * 119.99822 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00161 * 359.97438 * 3 2 1 6 6 N 1.46899 * 109.47107 * 180.02562 * 5 3 2 7 7 C 1.46843 * 111.00049 * 294.21372 * 6 5 3 8 8 C 1.53043 * 109.52446 * 174.16274 * 7 6 5 9 9 C 1.53115 * 109.28035 * 59.17281 * 8 7 6 10 10 C 1.52998 * 109.57792 * 182.41029 * 9 8 7 11 11 C 1.50695 * 109.47163 * 294.72133 * 10 9 8 12 12 H 1.08002 * 120.00106 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00138 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99716 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00055 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46788 * 90.00036 * 15 13 11 17 17 H 1.48501 * 109.47171 * 210.00000 * 15 13 11 18 18 H 1.48505 * 109.47253 * 330.00142 * 15 13 11 19 19 C 1.53119 * 109.16391 * 302.35079 * 9 8 7 20 20 C 1.46842 * 111.00041 * 169.99728 * 6 5 3 21 21 C 1.38996 * 119.99866 * 179.97438 * 2 1 3 22 22 N 1.29624 * 124.94293 * 179.69354 * 21 2 1 23 23 C 1.31985 * 116.91788 * 179.81879 * 22 21 2 24 24 C 1.33442 * 114.56786 * 0.46809 * 23 22 21 25 25 S 1.70970 * 124.94523 * 0.02562 * 21 2 1 26 26 H 1.08999 * 109.47333 * 89.99805 * 1 2 3 27 27 H 1.08997 * 109.47024 * 210.00620 * 1 2 3 28 28 H 1.09000 * 109.46875 * 330.00379 * 1 2 3 29 29 H 1.09002 * 109.47152 * 60.00245 * 5 3 2 30 30 H 1.09001 * 109.46980 * 300.00345 * 5 3 2 31 31 H 1.09004 * 109.46019 * 294.17499 * 7 6 5 32 32 H 1.08999 * 109.46883 * 54.14319 * 7 6 5 33 33 H 1.09007 * 109.49669 * 299.23395 * 8 7 6 34 34 H 1.08996 * 109.50102 * 179.12000 * 8 7 6 35 35 H 1.09007 * 109.52268 * 62.25145 * 9 8 7 36 36 H 1.09004 * 109.46585 * 54.71554 * 10 9 8 37 37 H 1.08993 * 109.47277 * 174.71674 * 10 9 8 38 38 H 0.97003 * 119.99779 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.50021 * 297.71564 * 19 9 8 40 40 H 1.09001 * 109.50518 * 177.59261 * 19 9 8 41 41 H 1.08998 * 109.46877 * 305.85973 * 20 6 5 42 42 H 1.09002 * 109.46171 * 65.83843 * 20 6 5 43 43 H 1.08000 * 122.72102 * 180.23223 * 23 22 21 44 44 H 1.08004 * 125.97150 * 179.71255 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3400 3.5889 -0.0011 7 6 3.1093 3.6241 1.2492 8 6 4.1892 4.7044 1.1550 9 6 3.5262 6.0614 0.9034 10 6 4.6029 7.1373 0.7483 11 6 5.3431 7.2987 2.0510 12 1 5.0723 6.6947 2.9044 13 6 6.3660 8.2175 2.1535 14 7 6.6961 8.9526 1.1141 15 14 7.2830 8.4181 3.7685 16 1 8.4445 7.4932 3.7963 17 1 7.7619 9.8180 3.8953 18 1 6.3717 8.1024 4.8977 19 6 2.6923 5.9835 -0.3784 20 6 1.6558 4.8661 -0.2398 21 6 2.1600 -1.2038 0.0005 22 7 3.4514 -1.3155 -0.0051 23 6 3.9453 -2.5394 0.0002 24 6 3.0275 -3.5081 0.0008 25 16 1.4359 -2.7526 0.0006 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 0.7584 2.5303 0.8892 30 1 0.7590 2.5298 -0.8908 31 1 2.4413 3.8498 2.0804 32 1 3.5791 2.6544 1.4141 33 1 4.8658 4.4719 0.3326 34 1 4.7499 4.7408 2.0890 35 1 2.8792 6.3122 1.7441 36 1 5.3029 6.8407 -0.0329 37 1 4.1348 8.0833 0.4767 38 1 7.4160 9.5988 1.1861 39 1 3.3453 5.7711 -1.2249 40 1 2.1835 6.9338 -0.5399 41 1 1.0698 4.7985 -1.1563 42 1 0.9948 5.0862 0.5985 43 1 5.0063 -2.7408 -0.0001 44 1 3.2256 -4.5698 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581882156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:01 Heat of formation + Delta-G solvation = 4.716483 kcal Electronic energy + Delta-G solvation = -25001.901296 eV Core-core repulsion = 21466.631096 eV Total energy + Delta-G solvation = -3535.270201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75553 -40.34017 -39.39332 -36.92350 -36.07920 -34.26007 -31.70906 -31.33889 -30.27519 -28.20607 -27.86805 -26.10575 -24.94959 -24.02394 -22.69824 -22.04998 -20.45979 -20.06431 -19.32041 -18.45629 -17.83633 -17.32615 -17.18248 -16.77753 -16.43729 -15.88538 -15.82089 -15.34268 -15.16924 -14.97258 -14.74074 -14.24737 -14.19425 -14.15143 -14.04673 -13.61634 -13.54744 -13.31172 -12.93560 -12.92106 -12.59558 -12.40834 -12.36428 -12.18284 -12.01897 -11.72935 -11.42582 -11.33726 -11.23554 -10.83426 -10.71104 -10.53223 -10.25725 -10.22487 -9.22828 -9.13865 -8.18360 -6.27787 -0.23703 0.02947 0.71105 1.36914 1.39104 1.49155 1.49418 1.61365 2.07287 2.40494 2.88363 3.14396 3.28457 3.77311 3.98935 4.04446 4.09609 4.13429 4.28600 4.30475 4.40636 4.44250 4.52158 4.57397 4.58801 4.69008 4.75653 4.77691 4.82922 4.97149 5.00180 5.09151 5.13193 5.28050 5.38683 5.42952 5.43736 5.57104 5.79050 5.82703 5.89772 6.09655 6.20876 6.29821 6.86337 6.88248 7.12282 7.40179 8.93698 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.002538 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.523715 B =11027.725746 C =11965.410619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.534 5.534 3 C 0.498 3.502 4 O -0.503 6.503 5 C 0.050 3.950 6 N -0.546 5.546 7 C 0.069 3.931 8 C -0.090 4.090 9 C -0.073 4.073 10 C 0.033 3.967 11 C -0.530 4.530 12 H 0.058 0.942 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.960 3.040 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.262 1.262 19 C -0.109 4.109 20 C 0.071 3.929 21 C 0.242 3.758 22 N -0.538 5.538 23 C 0.039 3.961 24 C -0.272 4.272 25 S 0.184 5.816 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.143 0.857 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.055 0.945 36 H -0.019 1.019 37 H -0.008 1.008 38 H 0.262 0.738 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.050 0.950 43 H 0.183 0.817 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.784 -26.402 -2.896 34.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.266 5.266 3 C 0.284 3.716 4 O -0.373 6.373 5 C -0.081 4.081 6 N -0.271 5.271 7 C -0.059 4.059 8 C -0.128 4.128 9 C -0.091 4.091 10 C -0.004 4.004 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.785 3.215 16 H -0.203 1.203 17 H -0.205 1.205 18 H -0.186 1.186 19 C -0.147 4.147 20 C -0.056 4.056 21 C -0.125 4.125 22 N -0.260 5.260 23 C -0.111 4.111 24 C -0.412 4.412 25 S 0.433 5.567 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.136 0.864 29 H 0.115 0.885 30 H 0.161 0.839 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.074 0.926 36 H -0.001 1.001 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.200 0.800 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -21.429 -26.104 -3.339 33.938 hybrid contribution 1.895 0.494 1.212 2.303 sum -19.534 -25.610 -2.127 32.280 Atomic orbital electron populations 1.22602 0.73335 1.06720 1.05831 1.45564 1.09273 1.01332 1.70445 1.21706 0.88380 0.85728 0.75772 1.90821 1.15841 1.86384 1.44261 1.22109 0.93610 0.86151 1.06221 1.61463 1.25913 1.03596 1.36159 1.22034 0.95371 0.98943 0.89563 1.21342 0.97135 0.94150 1.00188 1.21089 0.96356 0.94502 0.97195 1.19007 0.93147 0.93107 0.95099 1.21659 1.16888 1.19962 0.98294 0.92366 1.25973 0.98305 0.95628 1.00171 1.70107 1.30735 1.24911 1.31866 0.85516 0.78819 0.77371 0.79783 1.20260 1.20546 1.18581 1.21620 0.97577 0.98366 0.97140 1.22089 0.94664 0.86701 1.02119 1.24305 0.91563 0.93557 1.03052 1.66534 1.10980 1.27116 1.21413 1.21900 1.02703 0.85023 1.01519 1.27319 0.93464 1.06044 1.14349 1.83376 1.08667 0.94202 1.70413 0.88387 0.88851 0.86377 0.88468 0.83906 0.94327 0.91571 0.94715 0.93253 0.92625 1.00053 0.99007 0.92929 0.93438 0.90970 0.87849 0.93165 0.79970 0.77177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 9.93 127.77 1.27 1.60 16 2 N -0.53 -10.30 3.07 -667.14 -2.05 -12.35 16 3 C 0.50 12.99 7.31 87.66 0.64 13.63 16 4 O -0.50 -19.36 12.96 -3.05 -0.04 -19.40 16 5 C 0.05 0.93 4.00 85.56 0.34 1.27 16 6 N -0.55 -15.65 4.40 -900.93 -3.96 -19.61 16 7 C 0.07 2.36 5.11 86.33 0.44 2.80 16 8 C -0.09 -3.89 5.15 30.65 0.16 -3.73 16 9 C -0.07 -3.15 2.20 -10.72 -0.02 -3.18 16 10 C 0.03 1.86 4.45 29.85 0.13 1.99 16 11 C -0.53 -31.49 8.45 25.60 0.22 -31.27 16 12 H 0.06 3.34 7.08 -2.91 -0.02 3.32 16 13 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 14 N -0.94 -59.49 13.29 21.45 0.28 -59.21 16 15 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 19 C -0.11 -3.80 5.38 30.65 0.16 -3.64 16 20 C 0.07 1.78 5.46 86.33 0.47 2.25 16 21 C 0.24 5.53 7.68 179.21 1.38 6.90 16 22 N -0.54 -16.06 8.65 -201.76 -1.75 -17.81 16 23 C 0.04 0.85 11.34 83.58 0.95 1.80 16 24 C -0.27 -3.91 11.35 66.73 0.76 -3.15 16 25 S 0.18 2.41 21.70 -56.49 -1.23 1.18 16 26 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.09 0.31 7.05 -2.39 -0.02 0.29 16 28 H 0.12 0.16 6.44 -2.39 -0.02 0.15 16 29 H 0.10 1.22 7.38 -2.39 -0.02 1.20 16 30 H 0.14 1.60 7.95 -2.39 -0.02 1.58 16 31 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 2.53 5.78 -2.39 -0.01 2.52 16 33 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 2.28 7.06 -2.39 -0.02 2.26 16 35 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 36 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.10 1.92 8.01 -2.39 -0.02 1.90 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.18 3.40 8.06 -2.91 -0.02 3.37 16 44 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -87.26 362.65 1.63 -85.63 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 0.99 Total: 5.58 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 7.36 Total: -12.48 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -7.47 Total: -108.98 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.04 Total: -19.40 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.23 Total: 1.18 kcal Total: -87.26 1.63 -85.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581882156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.348 kcal (2) G-P(sol) polarization free energy of solvation -87.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds