Wall clock time and date at job start Tue Mar 31 2020 13:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81403 * 109.47143 * 2 1 4 4 C 1.81396 * 102.99947 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47146 * 180.02562 * 4 3 2 6 6 C 1.38840 * 120.74742 * 269.98068 * 5 4 3 7 7 C 1.38072 * 119.30763 * 180.02562 * 6 5 4 8 8 N 1.31940 * 120.84983 * 359.72309 * 7 6 5 9 9 C 1.32345 * 121.63200 * 0.56467 * 8 7 6 10 10 N 1.39405 * 119.69581 * 179.71109 * 9 8 7 11 11 C 1.34779 * 120.00011 * 4.80227 * 10 9 8 12 12 O 1.21275 * 119.99863 * 354.91685 * 11 10 9 13 13 C 1.50697 * 120.00328 * 174.91950 * 11 10 9 14 14 H 1.09003 * 109.47221 * 319.99702 * 13 11 10 15 15 N 1.46893 * 109.47317 * 199.99944 * 13 11 10 16 16 C 1.53004 * 109.47442 * 79.99340 * 13 11 10 17 17 C 1.53000 * 109.47299 * 185.00231 * 16 13 11 18 18 C 1.50694 * 109.46970 * 180.02562 * 17 16 13 19 19 H 1.07997 * 120.00000 * 359.71916 * 18 17 16 20 20 C 1.37881 * 119.99848 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99935 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99961 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46938 * 90.00218 * 22 20 18 24 24 H 1.48497 * 109.46725 * 210.00207 * 22 20 18 25 25 H 1.48497 * 109.46941 * 330.00101 * 22 20 18 26 26 C 1.38352 * 120.75573 * 90.00140 * 5 4 3 27 27 H 1.09005 * 109.47042 * 59.99606 * 1 2 3 28 28 H 1.09001 * 109.46721 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46974 * 299.99604 * 1 2 3 30 30 H 1.09002 * 109.46974 * 240.00396 * 2 1 3 31 31 H 1.08996 * 109.47577 * 120.00653 * 2 1 3 32 32 H 1.09000 * 109.47369 * 60.00410 * 4 3 2 33 33 H 1.08996 * 109.47324 * 299.99887 * 4 3 2 34 34 H 1.07999 * 120.34753 * 0.04091 * 6 5 4 35 35 H 1.08004 * 119.57685 * 179.97438 * 7 6 5 36 36 H 0.96998 * 120.00163 * 184.80021 * 10 9 8 37 37 H 1.00902 * 110.99960 * 299.99949 * 15 13 11 38 38 H 1.00896 * 111.00165 * 63.95061 * 15 13 11 39 39 H 1.08999 * 109.46372 * 64.99993 * 16 13 11 40 40 H 1.08997 * 109.47150 * 305.00567 * 16 13 11 41 41 H 1.08998 * 109.46914 * 60.00231 * 17 16 13 42 42 H 1.09009 * 109.46885 * 300.00416 * 17 16 13 43 43 H 0.96997 * 120.00004 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.44751 * 359.95384 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.5964 2.8610 -0.0002 6 6 4.9069 3.4998 -1.1932 7 6 5.5112 4.7408 -1.1580 8 7 5.7903 5.3250 -0.0084 9 6 5.5150 4.7460 1.1494 10 7 5.8328 5.3974 2.3402 11 6 6.3282 6.6505 2.3114 12 8 6.5841 7.1771 1.2494 13 6 6.5642 7.3972 3.5989 14 1 5.7442 7.1995 4.2892 15 7 6.6353 8.8383 3.3232 16 6 7.8808 6.9320 4.2244 17 6 8.0594 7.5972 5.5906 18 6 9.3564 7.1394 6.2064 19 1 9.9877 6.4401 5.6783 20 6 9.7341 7.6084 7.4468 21 7 10.8657 7.2085 7.9844 22 14 8.6383 8.8119 8.3636 23 1 7.6810 8.0603 9.2144 24 1 9.4756 9.6912 9.2184 25 1 7.8874 9.6406 7.3866 26 6 4.9064 3.4965 1.1890 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.2399 0.9545 -0.8910 33 1 4.2406 0.9542 0.8889 34 1 4.6778 3.0311 -2.1388 35 1 5.7550 5.2414 -2.0834 36 1 5.6974 4.9488 3.1895 37 1 7.3884 9.0476 2.6851 38 1 5.7554 9.1826 2.9694 39 1 8.7101 7.2096 3.5738 40 1 7.8620 5.8491 4.3472 41 1 7.2301 7.3196 6.2411 42 1 8.0781 8.6801 5.4678 43 1 11.1316 7.5388 8.8568 44 1 4.6785 3.0284 2.1352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582299249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:15 Heat of formation + Delta-G solvation = -4.755480 kcal Electronic energy + Delta-G solvation = -23767.536041 eV Core-core repulsion = 20231.855105 eV Total energy + Delta-G solvation = -3535.680936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98005 -39.38666 -35.62769 -35.03379 -34.03266 -33.28662 -32.76970 -30.55328 -30.33127 -28.47613 -26.89118 -24.36012 -24.07632 -23.41835 -22.05071 -20.37294 -19.86581 -18.10040 -17.33640 -16.71992 -16.63394 -16.18233 -16.11157 -15.59829 -15.38273 -15.32548 -14.98634 -14.84993 -14.32499 -14.13103 -13.71345 -13.54871 -13.43679 -13.41476 -12.76709 -12.60584 -12.44071 -12.23074 -12.14851 -11.90812 -11.68706 -11.08960 -10.89534 -10.84293 -10.54853 -10.50106 -9.96378 -9.82805 -9.72584 -9.64360 -9.35839 -9.11126 -8.51656 -8.46062 -8.38866 -8.13589 -5.99876 -3.97686 0.56221 0.90828 1.56265 2.10856 2.69429 2.79542 3.35700 3.43843 3.51767 3.75103 4.02194 4.23962 4.38311 4.39311 4.44619 4.51127 4.71613 4.76879 4.81840 4.86457 4.94704 4.99610 5.13820 5.19108 5.26856 5.32016 5.36673 5.45309 5.56387 5.57156 5.62141 5.93021 6.09800 6.24885 6.43027 6.59113 6.83989 7.04011 7.27802 7.35326 7.57044 7.62919 7.85660 7.89163 8.23494 8.57226 9.04731 9.62939 11.13523 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.002218 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.593705 B =12621.541111 C =13425.238772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 S -0.244 6.244 4 C -0.048 4.048 5 C -0.006 4.006 6 C -0.194 4.194 7 C 0.134 3.866 8 N -0.473 5.473 9 C 0.368 3.632 10 N -0.661 5.661 11 C 0.474 3.526 12 O -0.481 6.481 13 C 0.077 3.923 14 H 0.101 0.899 15 N -0.809 5.809 16 C -0.089 4.089 17 C -0.004 4.004 18 C -0.522 4.522 19 H 0.069 0.931 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.880 3.120 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.260 1.260 26 C -0.193 4.193 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.160 0.840 36 H 0.420 0.580 37 H 0.351 0.649 38 H 0.337 0.663 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.009 0.991 42 H 0.035 0.965 43 H 0.262 0.738 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.314 -14.768 -18.573 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.243 4.243 3 S -0.016 6.016 4 C -0.195 4.195 5 C -0.015 4.015 6 C -0.217 4.217 7 C -0.024 4.024 8 N -0.189 5.189 9 C 0.137 3.863 10 N -0.308 5.308 11 C 0.259 3.741 12 O -0.350 6.350 13 C -0.039 4.039 14 H 0.119 0.881 15 N -0.337 5.337 16 C -0.127 4.127 17 C -0.042 4.042 18 C -0.560 4.560 19 H 0.087 0.913 20 C -0.136 4.136 21 N -0.545 5.545 22 Si 0.707 3.293 23 H -0.205 1.205 24 H -0.216 1.216 25 H -0.184 1.184 26 C -0.218 4.218 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.257 0.743 37 H 0.166 0.834 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.027 0.973 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.053 -12.424 -18.308 29.860 hybrid contribution -0.384 -2.052 0.009 2.087 sum -20.436 -14.476 -18.299 31.017 Atomic orbital electron populations 1.21512 0.92045 1.02661 1.03355 1.23365 1.00423 0.95497 1.05002 1.87334 1.03722 1.12457 1.98090 1.22273 0.93951 0.97001 1.06293 1.19229 0.95157 0.94055 0.93080 1.21889 1.03900 0.97641 0.98297 1.22676 0.92620 0.91503 0.95604 1.67714 1.19260 1.34954 0.96923 1.18565 0.92048 0.88768 0.86953 1.43990 1.63351 1.16486 1.06983 1.23033 0.75807 0.81080 0.94144 1.90764 1.45778 1.66470 1.32026 1.21922 1.02588 0.88045 0.91331 0.88111 1.59039 1.09939 1.10665 1.54038 1.21503 0.92145 0.99726 0.99329 1.19491 0.96692 0.97348 0.90647 1.21171 1.04534 1.27412 1.02865 0.91312 1.25023 0.94990 0.96173 0.97368 1.69922 1.22302 1.44903 1.17383 0.86768 0.80770 0.81814 0.79962 1.20514 1.21610 1.18383 1.21330 1.05227 0.95884 0.99402 0.91629 0.90967 0.91553 0.90037 0.89956 0.88585 0.88609 0.84714 0.82321 0.74272 0.83445 0.85146 0.92016 0.92215 0.97288 0.94683 0.92835 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 9.92 37.16 0.37 -0.27 16 2 C -0.09 -0.49 6.66 37.16 0.25 -0.24 16 3 S -0.24 -1.94 21.72 -107.50 -2.33 -4.28 16 4 C -0.05 -0.33 6.11 36.01 0.22 -0.11 16 5 C -0.01 -0.05 5.17 -104.35 -0.54 -0.59 16 6 C -0.19 -1.79 9.81 -39.42 -0.39 -2.18 16 7 C 0.13 1.53 11.17 -17.57 -0.20 1.33 16 8 N -0.47 -7.07 7.89 -12.37 -0.10 -7.17 16 9 C 0.37 4.91 7.42 -154.71 -1.15 3.77 16 10 N -0.66 -8.52 5.39 -11.43 -0.06 -8.58 16 11 C 0.47 7.36 7.03 -10.99 -0.08 7.28 16 12 O -0.48 -8.91 14.51 5.56 0.08 -8.83 16 13 C 0.08 1.19 3.15 -68.87 -0.22 0.98 16 14 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 15 N -0.81 -12.58 8.44 -5.66 -0.05 -12.62 16 16 C -0.09 -1.68 4.78 -26.73 -0.13 -1.81 16 17 C 0.00 -0.10 3.93 -27.89 -0.11 -0.21 16 18 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 19 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 20 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 21 N -0.91 -28.09 13.96 55.43 0.77 -27.31 16 22 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 26 C -0.19 -2.00 9.64 -39.24 -0.38 -2.38 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.51 8.10 -51.92 -0.42 0.09 16 33 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.42 4.10 8.70 -40.82 -0.36 3.74 16 37 H 0.35 5.61 8.58 -39.29 -0.34 5.28 16 38 H 0.34 4.54 9.06 -39.29 -0.36 4.18 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 42 H 0.03 0.85 6.81 -51.92 -0.35 0.49 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -35.61 382.60 -10.24 -45.85 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.87 Total: 7.75 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.78 Total: -7.75 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.57 Total: -55.69 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -2.33 Total: -4.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.61 -10.24 -45.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582299249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.092 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds