Wall clock time and date at job start Tue Mar 31 2020 13:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81403 * 109.47143 * 2 1 4 4 C 1.81396 * 102.99947 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47146 * 180.02562 * 4 3 2 6 6 C 1.38840 * 120.74742 * 269.98068 * 5 4 3 7 7 C 1.38072 * 119.30763 * 180.02562 * 6 5 4 8 8 N 1.31940 * 120.84983 * 359.72309 * 7 6 5 9 9 C 1.32345 * 121.63200 * 0.56467 * 8 7 6 10 10 N 1.39405 * 119.69581 * 179.71109 * 9 8 7 11 11 C 1.34779 * 120.00011 * 4.80227 * 10 9 8 12 12 O 1.21275 * 119.99863 * 354.91685 * 11 10 9 13 13 C 1.50697 * 120.00328 * 174.91950 * 11 10 9 14 14 H 1.09003 * 109.47221 * 319.99702 * 13 11 10 15 15 N 1.46893 * 109.47317 * 199.99944 * 13 11 10 16 16 C 1.53004 * 109.47442 * 79.99340 * 13 11 10 17 17 C 1.53000 * 109.47299 * 185.00231 * 16 13 11 18 18 C 1.50694 * 109.46970 * 180.02562 * 17 16 13 19 19 H 1.07997 * 120.00000 * 359.71916 * 18 17 16 20 20 C 1.37881 * 119.99848 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99935 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99961 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46938 * 90.00218 * 22 20 18 24 24 H 1.48497 * 109.46725 * 210.00207 * 22 20 18 25 25 H 1.48497 * 109.46941 * 330.00101 * 22 20 18 26 26 C 1.38352 * 120.75573 * 90.00140 * 5 4 3 27 27 H 1.09005 * 109.47042 * 59.99606 * 1 2 3 28 28 H 1.09001 * 109.46721 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46974 * 299.99604 * 1 2 3 30 30 H 1.09002 * 109.46974 * 240.00396 * 2 1 3 31 31 H 1.08996 * 109.47577 * 120.00653 * 2 1 3 32 32 H 1.09000 * 109.47369 * 60.00410 * 4 3 2 33 33 H 1.08996 * 109.47324 * 299.99887 * 4 3 2 34 34 H 1.07999 * 120.34753 * 0.04091 * 6 5 4 35 35 H 1.08004 * 119.57685 * 179.97438 * 7 6 5 36 36 H 0.96998 * 120.00163 * 184.80021 * 10 9 8 37 37 H 1.00902 * 110.99960 * 299.99949 * 15 13 11 38 38 H 1.00896 * 111.00165 * 63.95061 * 15 13 11 39 39 H 1.08999 * 109.46372 * 64.99993 * 16 13 11 40 40 H 1.08997 * 109.47150 * 305.00567 * 16 13 11 41 41 H 1.08998 * 109.46914 * 60.00231 * 17 16 13 42 42 H 1.09009 * 109.46885 * 300.00416 * 17 16 13 43 43 H 0.96997 * 120.00004 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.44751 * 359.95384 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.5964 2.8610 -0.0002 6 6 4.9069 3.4998 -1.1932 7 6 5.5112 4.7408 -1.1580 8 7 5.7903 5.3250 -0.0084 9 6 5.5150 4.7460 1.1494 10 7 5.8328 5.3974 2.3402 11 6 6.3282 6.6505 2.3114 12 8 6.5841 7.1771 1.2494 13 6 6.5642 7.3972 3.5989 14 1 5.7442 7.1995 4.2892 15 7 6.6353 8.8383 3.3232 16 6 7.8808 6.9320 4.2244 17 6 8.0594 7.5972 5.5906 18 6 9.3564 7.1394 6.2064 19 1 9.9877 6.4401 5.6783 20 6 9.7341 7.6084 7.4468 21 7 10.8657 7.2085 7.9844 22 14 8.6383 8.8119 8.3636 23 1 7.6810 8.0603 9.2144 24 1 9.4756 9.6912 9.2184 25 1 7.8874 9.6406 7.3866 26 6 4.9064 3.4965 1.1890 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.2399 0.9545 -0.8910 33 1 4.2406 0.9542 0.8889 34 1 4.6778 3.0311 -2.1388 35 1 5.7550 5.2414 -2.0834 36 1 5.6974 4.9488 3.1895 37 1 7.3884 9.0476 2.6851 38 1 5.7554 9.1826 2.9694 39 1 8.7101 7.2096 3.5738 40 1 7.8620 5.8491 4.3472 41 1 7.2301 7.3196 6.2411 42 1 8.0781 8.6801 5.4678 43 1 11.1316 7.5388 8.8568 44 1 4.6785 3.0284 2.1352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582299249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:15 Heat of formation + Delta-G solvation = -29.073387 kcal Electronic energy + Delta-G solvation = -23768.590545 eV Core-core repulsion = 20231.855105 eV Total energy + Delta-G solvation = -3536.735439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94660 -40.44642 -36.96500 -36.18251 -34.88549 -34.73169 -33.64442 -32.29639 -31.27398 -29.14594 -28.45772 -25.77192 -24.66925 -24.19503 -23.19771 -21.94226 -21.05365 -19.23473 -18.70883 -18.32546 -17.31000 -17.18773 -16.88083 -16.70677 -16.29023 -16.20639 -15.98025 -15.70676 -15.63206 -15.28380 -14.96932 -14.72552 -14.52545 -14.18787 -14.04184 -13.97513 -13.47536 -13.18131 -12.92687 -12.80762 -12.67547 -12.54759 -12.27776 -12.03105 -11.81729 -11.74684 -11.59655 -11.36186 -11.19910 -11.04709 -10.70431 -10.46755 -10.34104 -9.65227 -9.33634 -8.71041 -8.24160 -6.27450 -0.11731 0.05298 0.95873 1.40823 1.44695 1.53006 1.58636 1.65032 1.82184 2.42567 2.89760 3.12412 3.27879 3.41267 3.56814 3.71671 3.95241 4.05050 4.05290 4.07838 4.09737 4.09804 4.23528 4.40751 4.47374 4.54178 4.69127 4.72451 4.77047 4.84326 4.88091 4.91730 5.13123 5.16333 5.23532 5.26988 5.50074 5.65727 5.72052 5.75106 5.99852 6.17170 6.33057 6.46287 6.81224 6.88686 7.25650 7.36988 8.92642 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.002218 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.593705 B =12621.541111 C =13425.238772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 S -0.297 6.297 4 C -0.036 4.036 5 C -0.009 4.009 6 C -0.180 4.180 7 C 0.114 3.886 8 N -0.518 5.518 9 C 0.337 3.663 10 N -0.652 5.652 11 C 0.478 3.522 12 O -0.517 6.517 13 C 0.089 3.911 14 H 0.127 0.873 15 N -0.816 5.816 16 C -0.080 4.080 17 C 0.002 3.998 18 C -0.531 4.531 19 H 0.027 0.973 20 C 0.001 3.999 21 N -0.955 5.955 22 Si 0.953 3.047 23 H -0.263 1.263 24 H -0.290 1.290 25 H -0.244 1.244 26 C -0.187 4.187 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.433 0.567 37 H 0.346 0.654 38 H 0.349 0.651 39 H 0.039 0.961 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.030 0.970 43 H 0.264 0.736 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.011 -16.068 -18.856 33.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.230 4.230 3 S -0.070 6.070 4 C -0.183 4.183 5 C -0.018 4.018 6 C -0.203 4.203 7 C -0.043 4.043 8 N -0.234 5.234 9 C 0.107 3.893 10 N -0.301 5.301 11 C 0.264 3.736 12 O -0.389 6.389 13 C -0.027 4.027 14 H 0.145 0.855 15 N -0.345 5.345 16 C -0.119 4.119 17 C -0.035 4.035 18 C -0.569 4.569 19 H 0.046 0.954 20 C -0.195 4.195 21 N -0.596 5.596 22 Si 0.776 3.224 23 H -0.188 1.188 24 H -0.217 1.217 25 H -0.167 1.167 26 C -0.212 4.212 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.273 0.727 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.788 -13.767 -18.603 32.479 hybrid contribution 0.465 -1.805 -0.015 1.864 sum -22.323 -15.572 -18.618 32.977 Atomic orbital electron populations 1.21534 0.91837 1.03558 1.02658 1.23413 1.00433 0.93056 1.06099 1.87544 1.05298 1.15874 1.98257 1.22262 0.92466 0.95606 1.07971 1.19569 0.94544 0.95064 0.92632 1.22196 1.01861 0.96573 0.99675 1.23022 0.93350 0.92669 0.95283 1.67592 1.20744 1.36798 0.98273 1.18800 0.93864 0.90054 0.86606 1.43792 1.62679 1.15703 1.07885 1.22878 0.75585 0.81756 0.93426 1.90748 1.47600 1.67506 1.33062 1.21732 1.01164 0.88072 0.91730 0.85512 1.59047 1.10609 1.10722 1.54080 1.21287 0.93601 1.00001 0.96973 1.19377 0.94352 0.97104 0.92696 1.21559 1.06105 1.26391 1.02860 0.95416 1.26033 0.96549 0.98373 0.98563 1.70084 1.24588 1.46838 1.18111 0.85616 0.78835 0.79259 0.78692 1.18813 1.21670 1.16742 1.21565 1.03938 0.94706 1.00961 0.92209 0.89167 0.92405 0.88725 0.89001 0.86661 0.87244 0.81902 0.80957 0.72700 0.83989 0.83739 0.94216 0.91348 0.95621 0.95189 0.92687 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.92 71.98 0.71 -0.28 16 2 C -0.08 -0.63 6.66 71.98 0.48 -0.15 16 3 S -0.30 -4.12 21.72 -56.49 -1.23 -5.34 16 4 C -0.04 -0.38 6.11 71.24 0.44 0.05 16 5 C -0.01 -0.14 5.17 -19.69 -0.10 -0.24 16 6 C -0.18 -2.99 9.81 22.37 0.22 -2.77 16 7 C 0.11 2.54 11.17 84.64 0.95 3.48 16 8 N -0.52 -15.54 7.89 -193.04 -1.52 -17.06 16 9 C 0.34 8.81 7.42 132.92 0.99 9.80 16 10 N -0.65 -16.30 5.39 -308.46 -1.66 -17.96 16 11 C 0.48 14.66 7.03 87.66 0.62 15.27 16 12 O -0.52 -19.43 14.51 -3.01 -0.04 -19.47 16 13 C 0.09 2.64 3.15 44.17 0.14 2.78 16 14 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 15 N -0.82 -24.55 8.44 -171.81 -1.45 -26.00 16 16 C -0.08 -3.02 4.78 30.60 0.15 -2.87 16 17 C 0.00 0.10 3.93 29.85 0.12 0.22 16 18 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 19 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 20 C 0.00 0.05 5.47 84.66 0.46 0.52 16 21 N -0.96 -60.58 13.96 21.45 0.30 -60.29 16 22 Si 0.95 44.62 27.47 68.60 1.88 46.50 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.24 -10.75 6.54 99.48 0.65 -10.10 16 26 C -0.19 -3.56 9.64 22.49 0.22 -3.35 16 27 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.12 0.81 8.10 -2.39 -0.02 0.79 16 33 H 0.11 0.89 8.10 -2.39 -0.02 0.87 16 34 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.43 7.82 8.70 -92.71 -0.81 7.01 16 37 H 0.35 11.08 8.58 -89.69 -0.77 10.31 16 38 H 0.35 8.98 9.06 -89.70 -0.81 8.16 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.03 1.09 7.57 -2.39 -0.02 1.07 16 42 H 0.03 1.40 6.81 -2.38 -0.02 1.39 16 43 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -79.37 382.60 0.49 -78.88 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -1.42 Total: 28.69 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.62 Total: -7.94 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -4.34 Total: -121.32 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.04 Total: -19.47 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.23 Total: -5.34 kcal Total: -79.37 0.49 -78.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582299249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.809 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds