Wall clock time and date at job start Tue Mar 31 2020 13:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81396 * 109.47513 * 2 1 4 4 C 1.81395 * 103.00574 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47459 * 180.02562 * 4 3 2 6 6 C 1.38838 * 120.75049 * 269.97522 * 5 4 3 7 7 C 1.38076 * 119.31173 * 180.02562 * 6 5 4 8 8 N 1.31935 * 120.84627 * 359.72467 * 7 6 5 9 9 C 1.32353 * 121.63842 * 0.56734 * 8 7 6 10 10 N 1.39400 * 119.69793 * 179.71073 * 9 8 7 11 11 C 1.34773 * 120.00128 * 4.79441 * 10 9 8 12 12 O 1.21278 * 120.00250 * 354.91561 * 11 10 9 13 13 C 1.50704 * 119.99949 * 174.91928 * 11 10 9 14 14 H 1.08993 * 109.47335 * 39.99713 * 13 11 10 15 15 N 1.46904 * 109.46977 * 160.00220 * 13 11 10 16 16 C 1.53002 * 109.46936 * 279.99606 * 13 11 10 17 17 C 1.53001 * 109.47205 * 174.99945 * 16 13 11 18 18 C 1.50699 * 109.47377 * 180.02562 * 17 16 13 19 19 H 1.07997 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99905 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00124 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99704 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46969 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47054 * 119.99892 * 22 20 18 25 25 H 1.48497 * 109.47067 * 239.99619 * 22 20 18 26 26 C 1.38358 * 120.75592 * 90.00046 * 5 4 3 27 27 H 1.08998 * 109.46918 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46481 * 299.99895 * 1 2 3 29 29 H 1.08999 * 109.47061 * 59.99837 * 1 2 3 30 30 H 1.09002 * 109.47199 * 240.00155 * 2 1 3 31 31 H 1.09006 * 109.47354 * 120.00401 * 2 1 3 32 32 H 1.09000 * 109.47354 * 59.99570 * 4 3 2 33 33 H 1.09006 * 109.46651 * 300.00245 * 4 3 2 34 34 H 1.07998 * 120.34994 * 0.04569 * 6 5 4 35 35 H 1.07999 * 119.58107 * 180.02562 * 7 6 5 36 36 H 0.96998 * 120.00055 * 184.79730 * 10 9 8 37 37 H 1.00898 * 111.00375 * 59.99539 * 15 13 11 38 38 H 1.00904 * 110.99950 * 183.95474 * 15 13 11 39 39 H 1.08996 * 109.47218 * 295.00098 * 16 13 11 40 40 H 1.08999 * 109.47059 * 55.00262 * 16 13 11 41 41 H 1.09000 * 109.47253 * 300.00937 * 17 16 13 42 42 H 1.09009 * 109.46823 * 60.00216 * 17 16 13 43 43 H 0.96998 * 119.99522 * 180.02562 * 21 20 18 44 44 H 1.08006 * 120.44920 * 359.95107 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.5964 2.8609 -0.0002 6 6 4.9070 3.4997 -1.1931 7 6 5.5114 4.7407 -1.1580 8 7 5.7903 5.3249 -0.0084 9 6 5.5150 4.7459 1.1495 10 7 5.8328 5.3973 2.3403 11 6 6.3283 6.6503 2.3115 12 8 6.5844 7.1769 1.2494 13 6 6.5642 7.3971 3.5990 14 1 6.9719 6.7151 4.3451 15 7 7.5160 8.4910 3.3633 16 6 5.2400 7.9734 4.1043 17 6 5.4558 8.6239 5.4723 18 6 4.1514 9.1909 5.9703 19 1 3.2580 9.0972 5.3709 20 6 4.0989 9.8304 7.1907 21 7 5.1871 9.9450 7.9204 22 14 2.4819 10.5327 7.8083 23 1 1.4155 10.2734 6.8079 24 1 2.1213 9.8866 9.0958 25 1 2.6237 11.9968 8.0118 26 6 4.9064 3.4964 1.1890 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.2399 0.9544 -0.8909 33 1 4.2406 0.9541 0.8890 34 1 4.6780 3.0311 -2.1388 35 1 5.7545 5.2417 -2.0833 36 1 5.6973 4.9488 3.1896 37 1 7.1608 9.1374 2.6748 38 1 7.7404 8.9669 4.2243 39 1 4.8768 8.7213 3.3996 40 1 4.5062 7.1725 4.1946 41 1 5.8192 7.8760 6.1770 42 1 6.1897 9.4248 5.3820 43 1 5.1500 10.3946 8.7791 44 1 4.6785 3.0284 2.1353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582299250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:18 Heat of formation + Delta-G solvation = -30.337650 kcal Electronic energy + Delta-G solvation = -23808.455130 eV Core-core repulsion = 20271.664869 eV Total energy + Delta-G solvation = -3536.790262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.89199 -40.36117 -37.17872 -36.11543 -34.90282 -34.75191 -33.63633 -31.70533 -31.25822 -29.11657 -28.24848 -26.01993 -24.65755 -24.21659 -23.39756 -22.08581 -21.02959 -19.16889 -18.60405 -18.20024 -17.28291 -17.03779 -16.85562 -16.59923 -16.34242 -15.94086 -15.85098 -15.72172 -15.63609 -15.30903 -14.97601 -14.71164 -14.44327 -14.12904 -13.99959 -13.94858 -13.47135 -13.17006 -12.97900 -12.89032 -12.70371 -12.64298 -12.50934 -12.26922 -11.84895 -11.75747 -11.75542 -11.29910 -11.06683 -10.99938 -10.56950 -10.43908 -10.11487 -9.65797 -9.30193 -8.69862 -8.22300 -6.32253 -0.08923 0.09452 0.98965 1.37951 1.39803 1.51489 1.59435 1.69279 1.80065 2.39412 2.93087 3.11436 3.30101 3.45425 3.71688 3.72365 3.97634 4.06349 4.08769 4.09221 4.12004 4.12502 4.20767 4.43902 4.49374 4.55024 4.63266 4.75697 4.78529 4.84806 4.88227 4.92312 5.06349 5.19197 5.24266 5.30049 5.46076 5.64615 5.76464 5.80036 6.00581 6.20188 6.22376 6.45397 6.83036 6.96389 7.31183 7.36821 8.88579 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.002560 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.454919 B =10934.207252 C =12956.346910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 S -0.305 6.305 4 C -0.033 4.033 5 C -0.009 4.009 6 C -0.180 4.180 7 C 0.115 3.885 8 N -0.519 5.519 9 C 0.341 3.659 10 N -0.653 5.653 11 C 0.517 3.483 12 O -0.505 6.505 13 C 0.086 3.914 14 H 0.117 0.883 15 N -0.829 5.829 16 C -0.121 4.121 17 C 0.031 3.969 18 C -0.544 4.544 19 H 0.052 0.948 20 C 0.006 3.994 21 N -0.925 5.925 22 Si 0.958 3.042 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.280 1.280 26 C -0.187 4.187 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.432 0.568 37 H 0.344 0.656 38 H 0.355 0.645 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.006 0.994 42 H 0.004 0.996 43 H 0.264 0.736 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -24.521 -16.988 30.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.228 4.228 3 S -0.077 6.077 4 C -0.180 4.180 5 C -0.018 4.018 6 C -0.203 4.203 7 C -0.042 4.042 8 N -0.235 5.235 9 C 0.110 3.890 10 N -0.302 5.302 11 C 0.303 3.697 12 O -0.376 6.376 13 C -0.029 4.029 14 H 0.135 0.865 15 N -0.361 5.361 16 C -0.161 4.161 17 C -0.006 4.006 18 C -0.582 4.582 19 H 0.070 0.930 20 C -0.193 4.193 21 N -0.565 5.565 22 Si 0.783 3.217 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.206 1.206 26 C -0.212 4.212 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.182 0.818 35 H 0.191 0.809 36 H 0.272 0.728 37 H 0.157 0.843 38 H 0.171 0.829 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.073 0.927 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.443 -22.840 -17.757 29.135 hybrid contribution -1.125 -0.550 1.412 1.887 sum -4.568 -23.390 -16.345 28.898 Atomic orbital electron populations 1.21536 0.92020 1.03544 1.02574 1.23399 1.00293 0.92938 1.06163 1.87691 1.05760 1.16028 1.98266 1.22254 0.92107 0.95577 1.08087 1.19563 0.94520 0.95145 0.92578 1.22196 1.01849 0.96570 0.99676 1.23033 0.93364 0.92611 0.95242 1.67596 1.20973 1.36610 0.98310 1.18729 0.93904 0.89937 0.86385 1.43575 1.63096 1.15480 1.08017 1.21092 0.75795 0.81254 0.91535 1.90725 1.46907 1.67185 1.32766 1.21399 0.93398 0.95071 0.93060 0.86517 1.58750 1.45333 1.16111 1.15925 1.22143 0.95933 0.99918 0.98111 1.18971 0.95770 0.94800 0.91108 1.21630 0.96246 1.36635 1.03696 0.92951 1.25845 0.99867 0.96444 0.97106 1.70062 1.29407 1.44044 1.13027 0.85503 0.79773 0.78072 0.78339 1.19180 1.20120 1.20552 1.21545 1.03906 0.94715 1.01006 0.89069 0.92601 0.92280 0.88556 0.88918 0.86454 0.87080 0.81815 0.80910 0.72801 0.84313 0.82923 0.93975 0.91578 0.97551 0.97774 0.92700 0.82264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.92 71.98 0.71 -0.51 16 2 C -0.08 -0.71 6.66 71.98 0.48 -0.23 16 3 S -0.30 -4.77 21.72 -56.49 -1.23 -5.99 16 4 C -0.03 -0.37 6.11 71.23 0.44 0.06 16 5 C -0.01 -0.15 5.17 -19.69 -0.10 -0.25 16 6 C -0.18 -3.15 9.81 22.37 0.22 -2.93 16 7 C 0.11 2.70 11.18 84.64 0.95 3.64 16 8 N -0.52 -16.50 7.89 -193.04 -1.52 -18.03 16 9 C 0.34 9.52 7.42 132.92 0.99 10.51 16 10 N -0.65 -17.99 5.39 -308.45 -1.66 -19.66 16 11 C 0.52 17.85 7.04 87.66 0.62 18.47 16 12 O -0.51 -21.07 14.51 -3.02 -0.04 -21.12 16 13 C 0.09 2.91 3.21 44.17 0.14 3.06 16 14 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 15 N -0.83 -29.01 8.94 -171.79 -1.54 -30.55 16 16 C -0.12 -4.78 4.78 30.60 0.15 -4.64 16 17 C 0.03 1.50 4.74 29.85 0.14 1.64 16 18 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16 19 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 20 C 0.01 0.33 5.46 84.65 0.46 0.79 16 21 N -0.93 -54.17 13.29 21.45 0.28 -53.88 16 22 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C -0.19 -3.80 9.64 22.49 0.22 -3.59 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.12 0.83 8.10 -2.39 -0.02 0.81 16 33 H 0.11 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.43 8.74 8.70 -92.71 -0.81 7.93 16 37 H 0.34 12.42 8.58 -89.70 -0.77 11.65 16 38 H 0.36 12.41 7.55 -89.69 -0.68 11.74 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.00 0.21 6.87 -2.38 -0.02 0.19 16 43 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -74.45 384.25 0.73 -73.72 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -1.23 Total: 33.59 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.64 Total: -3.78 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -4.43 Total: -122.11 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.04 Total: -21.12 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -4.77 SS G_CDS: -1.23 Total: -5.99 kcal Total: -74.45 0.73 -73.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582299250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.383 kcal (2) G-P(sol) polarization free energy of solvation -74.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds