Wall clock time and date at job start Tue Mar 31 2020 14:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35732 * 126.27349 * 2 1 4 4 C 1.41332 * 104.20709 * 179.97438 * 3 2 1 5 5 N 1.34122 * 127.15851 * 179.97438 * 4 3 2 6 6 C 1.32485 * 120.00410 * 180.02562 * 5 4 3 7 7 O 1.21675 * 119.99829 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00186 * 179.97438 * 6 5 4 9 9 N 1.46499 * 109.47078 * 179.97438 * 8 6 5 10 10 C 1.46495 * 120.00125 * 90.00247 * 9 8 6 11 11 C 1.34783 * 119.99830 * 270.00203 * 9 8 6 12 12 O 1.21272 * 120.00013 * 359.97438 * 11 9 8 13 13 C 1.50699 * 119.99540 * 180.02562 * 11 9 8 14 14 C 1.53004 * 109.46852 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.46981 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46753 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46627 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00088 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99408 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00362 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99607 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47365 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46961 * 119.99751 * 21 19 17 24 24 H 1.48498 * 109.47340 * 239.99995 * 21 19 17 25 25 N 1.35109 * 105.68869 * 0.02562 * 4 3 2 26 26 H 0.97002 * 124.71242 * 179.97438 * 25 4 3 27 27 O 1.20978 * 110.57621 * 359.70193 * 25 4 3 28 28 H 1.08999 * 109.47015 * 90.00070 * 1 2 3 29 29 H 1.09000 * 109.46646 * 209.99222 * 1 2 3 30 30 H 1.09000 * 109.47248 * 329.99940 * 1 2 3 31 31 H 1.07997 * 127.90096 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47442 * 300.00456 * 8 6 5 33 33 H 1.09009 * 109.47054 * 60.00006 * 8 6 5 34 34 H 1.09007 * 109.46944 * 89.99788 * 10 9 8 35 35 H 1.09001 * 109.47649 * 209.99789 * 10 9 8 36 36 H 1.09001 * 109.47045 * 329.99956 * 10 9 8 37 37 H 1.09002 * 109.46575 * 299.99400 * 13 11 9 38 38 H 1.08994 * 109.47644 * 59.99810 * 13 11 9 39 39 H 1.08999 * 109.46993 * 299.99669 * 14 13 11 40 40 H 1.09002 * 109.46817 * 59.99371 * 14 13 11 41 41 H 1.08999 * 109.47540 * 300.00012 * 15 14 13 42 42 H 1.08998 * 109.46588 * 60.00372 * 15 14 13 43 43 H 1.08999 * 109.47354 * 300.00428 * 16 15 14 44 44 H 1.08998 * 109.47023 * 60.00941 * 16 15 14 45 45 H 0.97003 * 119.99796 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3101 1.0943 0.0000 4 6 3.6199 0.5633 0.0006 5 7 4.7723 1.2496 0.0004 6 6 5.9285 0.6028 0.0005 7 8 5.9450 -0.6138 0.0013 8 6 7.2232 1.3739 -0.0003 9 7 8.3495 0.4371 0.0006 10 6 8.9127 -0.0326 -1.2676 11 6 8.8676 0.0074 1.1684 12 8 8.4017 0.3966 2.2182 13 6 10.0266 -0.9558 1.1693 14 6 10.4191 -1.2800 2.6121 15 6 11.5953 -2.2585 2.6131 16 6 11.9881 -2.5822 4.0560 17 6 13.1472 -3.5454 4.0569 18 1 13.5618 -3.8923 3.1220 19 6 13.6775 -3.9846 5.2515 20 7 13.1717 -3.5633 6.3900 21 14 15.1137 -5.1791 5.2527 22 1 15.4943 -5.4971 3.8530 23 1 16.2698 -4.5624 5.9515 24 1 14.7192 -6.4269 5.9546 25 7 3.4698 -0.7794 0.0003 26 1 4.2009 -1.4170 0.0003 27 8 2.2970 -1.0761 0.0056 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 2.0156 2.1333 -0.0004 32 1 7.2723 2.0008 -0.8907 33 1 7.2727 2.0020 0.8893 34 1 9.7096 0.6411 -1.5829 35 1 9.3164 -1.0365 -1.1362 36 1 8.1312 -0.0517 -2.0272 37 1 9.7371 -1.8729 0.6563 38 1 10.8749 -0.5041 0.6552 39 1 10.7086 -0.3627 3.1248 40 1 9.5708 -1.7315 3.1266 41 1 11.3055 -3.1757 2.1006 42 1 12.4436 -1.8072 2.0985 43 1 12.2781 -1.6647 4.5682 44 1 11.1400 -3.0333 4.5709 45 1 13.5451 -3.8720 7.2304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588148304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:42 Heat of formation + Delta-G solvation = -14.759156 kcal Electronic energy + Delta-G solvation = -26303.574189 eV Core-core repulsion = 22324.706590 eV Total energy + Delta-G solvation = -3978.867599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.63035 -41.39143 -40.22501 -36.92683 -36.56439 -36.09287 -35.32601 -34.65128 -32.77103 -31.74221 -29.85534 -29.53970 -27.80547 -26.83862 -24.69766 -24.24749 -23.25732 -21.83521 -21.59748 -20.22762 -19.59688 -19.33906 -18.46324 -18.05860 -17.83194 -17.37393 -16.85754 -16.52373 -16.33383 -15.98154 -15.88132 -15.30933 -14.94858 -14.61477 -14.55947 -14.48395 -14.09498 -14.06198 -13.67524 -13.60137 -13.42501 -13.39936 -13.05182 -12.98222 -12.85887 -12.65505 -12.30796 -12.19868 -12.17358 -11.95057 -11.42046 -11.37221 -11.16619 -10.96883 -10.82907 -10.59077 -10.57552 -9.73477 -9.35442 -8.20132 -6.32730 -0.40382 0.75201 0.84199 1.38922 1.40559 1.53662 1.54204 1.92006 2.22415 2.34113 2.40789 2.87037 3.12287 3.51750 3.59336 3.70018 3.97962 4.07163 4.11518 4.21222 4.25810 4.42710 4.57947 4.60379 4.61195 4.69488 4.73466 4.74344 4.76237 4.83255 4.89316 4.91739 5.14216 5.21098 5.24437 5.29728 5.32593 5.46838 5.54055 5.74727 5.85382 6.19458 6.23141 6.28357 6.65100 6.85469 7.10270 7.33954 7.36829 8.92549 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019936 B = 0.001910 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.155297 B =14658.132884 C =15452.058512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.105 3.895 3 C -0.250 4.250 4 C 0.394 3.606 5 N -0.658 5.658 6 C 0.461 3.539 7 O -0.622 6.622 8 C 0.119 3.881 9 N -0.604 5.604 10 C 0.077 3.923 11 C 0.511 3.489 12 O -0.590 6.590 13 C -0.123 4.123 14 C -0.095 4.095 15 C -0.094 4.094 16 C 0.018 3.982 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.009 4.009 20 N -0.938 5.938 21 Si 0.973 3.027 22 H -0.257 1.257 23 H -0.277 1.277 24 H -0.279 1.279 25 N -0.508 5.508 26 H 0.470 0.530 27 O 0.005 5.995 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.219 0.781 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.058 0.942 42 H 0.065 0.935 43 H -0.014 1.014 44 H -0.018 1.018 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.762 10.801 -23.539 39.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.045 3.955 3 C -0.273 4.273 4 C 0.148 3.852 5 N -0.426 5.426 6 C 0.248 3.752 7 O -0.508 6.508 8 C -0.007 4.007 9 N -0.336 5.336 10 C -0.064 4.064 11 C 0.301 3.699 12 O -0.470 6.470 13 C -0.162 4.162 14 C -0.133 4.133 15 C -0.131 4.131 16 C -0.019 4.019 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.797 3.203 22 H -0.181 1.181 23 H -0.203 1.203 24 H -0.205 1.205 25 N -0.178 5.178 26 H 0.334 0.666 27 O -0.008 6.008 28 H 0.143 0.857 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.235 0.765 32 H 0.159 0.841 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.005 0.995 44 H 0.000 1.000 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.722 10.615 -22.855 38.967 hybrid contribution 1.207 -1.399 0.816 2.020 sum -28.515 9.216 -22.039 37.199 Atomic orbital electron populations 1.21035 0.77919 1.07636 1.07169 1.25087 0.96972 0.81937 0.91499 1.22111 0.86353 1.03109 1.15746 1.22366 0.97424 0.79683 0.85698 1.69977 0.95402 1.33742 1.43438 1.22234 0.91816 0.86870 0.74265 1.90351 1.90033 1.18291 1.52082 1.20963 0.82111 0.91369 1.06245 1.47677 1.32326 1.46253 1.07388 1.22063 0.99714 1.01366 0.83303 1.21312 0.84561 0.81156 0.82880 1.90655 1.63837 1.59369 1.33180 1.21676 0.96477 0.99185 0.98857 1.21250 0.97618 0.98929 0.95479 1.21441 0.96533 0.97895 0.97278 1.19064 0.94773 0.94775 0.93280 1.21781 1.16350 1.26849 0.92970 0.91463 1.26137 1.00539 0.98727 0.95155 1.70150 1.43498 1.46150 0.98093 0.85283 0.78199 0.78013 0.78822 1.18050 1.20301 1.20457 1.44536 0.97712 1.10710 1.64847 0.66646 1.84005 1.05493 1.33641 1.77653 0.85691 0.87870 0.85016 0.76467 0.84148 0.88594 0.89520 0.89972 0.90546 0.87180 0.85826 0.93556 0.94652 0.92284 0.91616 0.99542 0.99982 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.39 10.44 71.24 0.74 1.14 16 2 C 0.10 0.63 7.43 25.11 0.19 0.82 16 3 C -0.25 -2.68 11.07 22.45 0.25 -2.43 16 4 C 0.39 8.46 7.77 134.37 1.04 9.50 16 5 N -0.66 -17.97 10.52 -311.13 -3.27 -21.24 16 6 C 0.46 14.13 7.77 88.01 0.68 14.81 16 7 O -0.62 -21.40 13.84 -4.27 -0.06 -21.46 16 8 C 0.12 3.16 5.96 85.63 0.51 3.67 16 9 N -0.60 -16.45 2.36 -851.13 -2.01 -18.46 16 10 C 0.08 1.34 10.24 127.77 1.31 2.65 16 11 C 0.51 17.85 7.67 87.66 0.67 18.53 16 12 O -0.59 -26.47 15.56 -3.01 -0.05 -26.52 16 13 C -0.12 -3.78 4.25 29.85 0.13 -3.65 16 14 C -0.09 -3.89 4.50 30.60 0.14 -3.75 16 15 C -0.09 -4.17 5.15 30.60 0.16 -4.01 16 16 C 0.02 1.05 4.97 29.85 0.15 1.20 16 17 C -0.54 -32.62 9.11 25.60 0.23 -32.39 16 18 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 19 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 20 N -0.94 -60.78 13.29 21.45 0.28 -60.49 16 21 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 N -0.51 -10.04 6.47 -55.46 -0.36 -10.40 16 26 H 0.47 11.02 6.28 -92.71 -0.58 10.44 16 27 O 0.00 0.06 11.14 76.55 0.85 0.91 16 28 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 29 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 31 H 0.22 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.14 2.60 8.07 -2.39 -0.02 2.58 16 33 H 0.10 2.89 7.42 -2.38 -0.02 2.87 16 34 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.08 1.36 6.44 -2.39 -0.02 1.34 16 36 H 0.08 1.19 8.07 -2.39 -0.02 1.17 16 37 H 0.11 2.98 7.40 -2.39 -0.02 2.96 16 38 H 0.12 2.99 8.11 -2.39 -0.02 2.97 16 39 H 0.05 2.03 8.10 -2.39 -0.02 2.01 16 40 H 0.03 1.61 8.10 -2.39 -0.02 1.59 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 43 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 45 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -93.78 383.09 4.50 -89.28 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.42 Total: 14.21 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 6.66 Total: 6.03 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -5.36 Total: -110.59 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: 0.75 Total: -47.07 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -93.78 4.50 -89.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.518 kcal (2) G-P(sol) polarization free energy of solvation -93.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds