Wall clock time and date at job start Tue Mar 31 2020 13:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34899 * 116.99849 * 179.97438 * 3 2 1 5 5 O 1.21621 * 119.99770 * 359.97438 * 4 3 2 6 6 C 1.46472 * 119.99841 * 179.97438 * 4 3 2 7 7 C 1.36633 * 125.99579 * 180.02562 * 6 4 3 8 8 C 1.40313 * 106.70585 * 179.97438 * 7 6 4 9 9 C 1.35166 * 107.12115 * 359.97438 * 8 7 6 10 10 C 1.50704 * 125.60914 * 180.02562 * 9 8 7 11 11 N 1.46497 * 109.47154 * 89.99900 * 10 9 8 12 12 C 1.34775 * 120.00021 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00147 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00271 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47429 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47512 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47138 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46847 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00100 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00110 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99799 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00241 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46984 * 59.99706 * 22 20 18 24 24 H 1.48497 * 109.47329 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47132 * 300.00285 * 22 20 18 26 26 O 1.33919 * 108.78686 * 359.75846 * 9 8 7 27 27 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 30 30 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 32 32 H 1.08007 * 126.65224 * 359.97438 * 7 6 4 33 33 H 1.07997 * 126.43611 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.47308 * 210.00368 * 10 9 8 35 35 H 1.08998 * 109.46716 * 330.00221 * 10 9 8 36 36 H 0.97003 * 120.00460 * 0.02562 * 11 10 9 37 37 H 1.08998 * 109.46659 * 299.99732 * 14 12 11 38 38 H 1.08994 * 109.47074 * 59.99362 * 14 12 11 39 39 H 1.09003 * 109.47121 * 300.00153 * 15 14 12 40 40 H 1.09011 * 109.47111 * 59.99670 * 15 14 12 41 41 H 1.08998 * 109.46903 * 300.00206 * 16 15 14 42 42 H 1.09001 * 109.46455 * 59.99577 * 16 15 14 43 43 H 1.08990 * 109.47228 * 300.00139 * 17 16 15 44 44 H 1.08998 * 109.47063 * 60.00456 * 17 16 15 45 45 H 0.97002 * 120.00049 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3513 1.5458 0.0005 5 8 4.0921 0.5813 0.0015 6 6 3.9110 2.8994 0.0000 7 6 5.2395 3.2190 0.0000 8 6 5.3172 4.6200 -0.0012 9 6 4.0495 5.0889 -0.0024 10 6 3.6516 6.5424 -0.0045 11 7 3.5233 7.0116 -1.3864 12 6 3.1741 8.2895 -1.6344 13 8 2.9655 9.0509 -0.7137 14 6 3.0415 8.7721 -3.0559 15 6 2.6377 10.2478 -3.0581 16 6 2.5037 10.7379 -4.5012 17 6 2.0992 12.2135 -4.5032 18 6 1.9667 12.6960 -5.9247 19 1 2.1520 12.0179 -6.7447 20 6 1.6089 14.0031 -6.1786 21 7 1.3828 14.8287 -5.1801 22 14 1.4439 14.6011 -7.9405 23 1 0.4048 13.8025 -8.6390 24 1 1.0527 16.0336 -7.9426 25 1 2.7438 14.4425 -8.6409 26 8 3.2052 4.0494 -0.0074 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 6.0690 2.5273 0.0007 33 1 6.2203 5.2122 -0.0020 34 1 2.6970 6.6586 0.5088 35 1 4.4139 7.1285 0.5089 36 1 3.6897 6.4027 -2.1228 37 1 3.9958 8.6554 -3.5696 38 1 2.2788 8.1863 -3.5689 39 1 1.6833 10.3640 -2.5444 40 1 3.4002 10.8339 -2.5449 41 1 3.4583 10.6217 -5.0144 42 1 1.7415 10.1518 -5.0146 43 1 1.1446 12.3292 -3.9902 44 1 2.8612 12.7998 -3.9897 45 1 1.1314 15.7484 -5.3586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:06 Heat of formation + Delta-G solvation = -131.742920 kcal Electronic energy + Delta-G solvation = -25276.147259 eV Core-core repulsion = 21259.914113 eV Total energy + Delta-G solvation = -4016.233146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.37343 -40.75060 -39.75610 -37.24857 -35.54177 -34.80940 -33.70699 -32.65526 -32.39072 -31.27192 -29.72975 -27.51148 -25.47297 -24.29837 -22.87592 -22.44663 -22.06737 -21.03028 -20.43811 -19.98259 -19.05653 -17.66037 -17.46808 -17.11931 -16.74183 -16.22188 -15.99981 -15.86980 -15.25895 -14.59692 -14.54772 -14.43942 -14.27587 -13.86463 -13.72850 -13.59695 -13.41053 -13.27120 -12.71442 -12.57580 -12.54183 -12.18264 -12.10625 -11.70276 -11.60877 -11.42864 -11.11757 -10.96860 -10.68725 -10.54005 -10.53494 -10.41293 -10.04830 -9.61589 -9.40698 -9.34353 -9.18023 -8.98142 -8.29584 -5.94505 -3.97111 0.18692 1.53693 1.65937 2.31152 2.32273 2.60650 3.10371 3.35779 3.40234 3.42439 3.83529 4.21819 4.24818 4.38620 4.41021 4.49420 4.70627 4.72506 4.82364 4.91147 5.04688 5.08072 5.23585 5.24756 5.29233 5.30528 5.34822 5.40812 5.44382 5.68610 5.75975 5.82320 6.04033 6.12750 6.24879 6.28989 6.53701 6.83361 7.01036 7.07205 7.18886 7.25716 7.74411 7.90563 8.06614 8.11014 8.48453 9.10355 9.66457 11.16705 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019862 B = 0.001588 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.410716 B =17626.070123 C =18332.888080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.063 3.937 3 O -0.346 6.346 4 C 0.555 3.445 5 O -0.487 6.487 6 C -0.061 4.061 7 C -0.102 4.102 8 C -0.198 4.198 9 C 0.017 3.983 10 C 0.195 3.805 11 N -0.738 5.738 12 C 0.516 3.484 13 O -0.530 6.530 14 C -0.137 4.137 15 C -0.104 4.104 16 C -0.111 4.111 17 C 0.020 3.980 18 C -0.522 4.522 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 O -0.142 6.142 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.404 0.596 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -31.372 12.939 34.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.011 4.011 3 O -0.263 6.263 4 C 0.400 3.600 5 O -0.376 6.376 6 C -0.112 4.112 7 C -0.122 4.122 8 C -0.218 4.218 9 C -0.036 4.036 10 C 0.072 3.928 11 N -0.394 5.394 12 C 0.304 3.696 13 O -0.405 6.405 14 C -0.177 4.177 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.017 4.017 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 O -0.037 6.037 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.186 0.814 33 H 0.184 0.816 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.239 0.761 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.795 -30.925 13.664 34.148 hybrid contribution 0.195 -0.193 -1.266 1.296 sum 4.990 -31.119 12.398 33.867 Atomic orbital electron populations 1.21833 0.92067 1.03291 1.03961 1.23176 0.95814 0.79086 1.03010 1.86682 1.22701 1.33226 1.83672 1.19118 0.81256 0.86345 0.73305 1.90962 1.60684 1.39576 1.46390 1.20745 0.90398 0.83785 1.16285 1.22047 0.95074 0.96188 0.98852 1.21764 0.97927 0.94206 1.07906 1.22906 0.88538 0.89425 1.02744 1.19718 1.04185 0.83122 0.85753 1.46157 1.73071 1.12835 1.07314 1.21173 0.75104 0.80499 0.92794 1.90731 1.48612 1.54461 1.46743 1.21806 1.03930 1.00261 0.91730 1.21471 1.02171 0.91276 0.99276 1.21653 1.00106 1.00089 0.92981 1.19093 0.96721 0.89145 0.96780 1.21250 1.46455 0.95662 0.92629 0.92808 1.25037 0.95561 0.97004 0.96933 1.69964 1.47418 1.05376 1.30666 0.86670 0.78467 0.77652 0.85245 1.20306 1.21321 1.20305 1.84143 1.36611 1.13232 1.69689 0.91166 0.89831 0.91237 0.90719 0.90765 0.81442 0.81591 0.89117 0.87549 0.76145 0.88913 0.88936 0.91721 0.91717 0.93442 0.93454 0.96571 0.96566 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.29 37.16 0.38 -0.26 16 2 C 0.06 0.38 6.20 37.16 0.23 0.61 16 3 O -0.35 -3.11 10.23 -42.48 -0.43 -3.55 16 4 C 0.56 5.38 7.93 34.05 0.27 5.65 16 5 O -0.49 -5.38 16.66 -19.36 -0.32 -5.71 16 6 C -0.06 -0.56 7.18 -36.85 -0.26 -0.82 16 7 C -0.10 -0.74 10.62 -39.38 -0.42 -1.16 16 8 C -0.20 -1.27 10.77 -39.89 -0.43 -1.70 16 9 C 0.02 0.13 6.68 -35.40 -0.24 -0.11 16 10 C 0.20 1.56 6.20 -5.19 -0.03 1.53 16 11 N -0.74 -6.56 5.55 -61.47 -0.34 -6.91 16 12 C 0.52 6.54 7.83 -10.99 -0.09 6.45 16 13 O -0.53 -8.92 15.98 5.55 0.09 -8.83 16 14 C -0.14 -1.70 5.70 -27.88 -0.16 -1.86 16 15 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 16 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 22 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 O -0.14 -1.33 10.67 4.72 0.05 -1.28 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.40 2.70 8.46 -40.82 -0.35 2.35 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.06 1.19 8.10 -51.92 -0.42 0.77 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 394.50 15.07 5.95 5.95 Total: -1.00 -35.32 394.50 -7.92 -43.24 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -7.07 Total: -3.71 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.55 Total: -9.37 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.40 Total: -33.58 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.62 Total: -19.36 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.32 -7.92 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.502 kcal (2) G-P(sol) polarization free energy of solvation -35.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds