Wall clock time and date at job start Tue Mar 31 2020 13:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46977 * 111.00056 * 2 1 4 4 C 1.53186 * 109.61455 * 52.25982 * 3 2 1 5 5 C 1.52208 * 108.14550 * 50.47397 * 4 3 2 6 6 N 1.32481 * 124.98052 * 163.47439 * 5 4 3 7 7 C 1.29367 * 117.59931 * 180.24988 * 6 5 4 8 8 N 1.39003 * 124.94347 * 179.82024 * 7 6 5 9 9 C 1.34777 * 119.99882 * 179.44381 * 8 7 6 10 10 O 1.21283 * 120.00222 * 0.28137 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27697 * 9 8 7 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47009 * 59.99434 * 19 17 15 21 21 H 1.48498 * 109.47590 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46858 * 299.99875 * 19 17 15 23 23 S 1.70944 * 110.11159 * 359.55574 * 7 6 5 24 24 C 1.34621 * 121.71380 * 343.22920 * 5 4 3 25 25 C 1.47213 * 110.99913 * 123.84611 * 2 1 3 26 26 H 1.09000 * 109.47056 * 300.10498 * 1 2 3 27 27 H 1.08996 * 109.47112 * 60.10960 * 1 2 3 28 28 H 1.08995 * 109.46641 * 180.10738 * 1 2 3 29 29 H 1.08999 * 109.45075 * 172.30916 * 3 2 1 30 30 H 1.09007 * 109.44637 * 292.24810 * 3 2 1 31 31 H 1.08994 * 109.73150 * 170.13350 * 4 3 2 32 32 H 1.09003 * 109.73255 * 290.76547 * 4 3 2 33 33 H 0.97001 * 120.00330 * 359.72797 * 8 7 6 34 34 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 35 35 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 36 36 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 37 37 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 38 38 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 39 39 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 40 40 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 41 41 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 42 42 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.63990 * 167.05646 * 25 2 1 44 44 H 1.08993 * 109.81625 * 46.53551 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3721 0.0000 4 6 1.3555 2.1687 1.1411 5 6 1.4937 1.3573 2.4214 6 7 1.3451 1.8399 3.6462 7 6 1.4998 1.0212 4.6359 8 7 1.3830 1.3635 5.9780 9 6 1.5541 0.4250 6.9301 10 8 1.8150 -0.7170 6.6160 11 6 1.4214 0.7947 8.3851 12 6 1.6619 -0.4441 9.2500 13 6 1.5278 -0.0687 10.7271 14 6 1.7689 -1.3074 11.5922 15 6 1.6362 -0.9377 13.0471 16 1 1.4036 0.0792 13.3268 17 6 1.8128 -1.8974 14.0212 18 7 2.0965 -3.1356 13.6806 19 14 1.6476 -1.4394 15.8246 20 1 0.2812 -0.9167 16.0794 21 1 1.8829 -2.6413 16.6643 22 1 2.6480 -0.3956 16.1638 23 16 1.8614 -0.5444 4.0525 24 6 1.7826 0.0427 2.3984 25 6 1.9966 -0.7655 1.1415 26 1 -0.3633 0.5155 0.8890 27 1 -0.3633 0.5121 -0.8909 28 1 -0.3632 -1.0276 0.0019 29 1 3.0767 1.3460 0.1375 30 1 1.7625 1.8504 -0.9514 31 1 1.8666 3.1247 1.2545 32 1 0.3008 2.3389 0.9246 33 1 1.1744 2.2769 6.2293 34 1 2.1569 1.5596 8.6341 35 1 0.4190 1.1799 8.5721 36 1 0.9268 -1.2094 9.0011 37 1 2.6645 -0.8289 9.0629 38 1 2.2632 0.6964 10.9758 39 1 0.5254 0.3163 10.9146 40 1 1.0338 -2.0728 11.3437 41 1 2.7715 -1.6919 11.4047 42 1 2.2204 -3.8108 14.3658 43 1 3.0619 -0.9473 0.9997 44 1 1.4704 -1.7165 1.2234 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588253994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:50 Heat of formation + Delta-G solvation = -1.859596 kcal Electronic energy + Delta-G solvation = -23811.534844 eV Core-core repulsion = 20275.979483 eV Total energy + Delta-G solvation = -3535.555361 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91111 -40.29711 -37.99534 -35.22886 -34.92015 -32.73694 -31.61895 -30.77353 -29.82304 -27.52119 -26.07829 -24.63846 -24.22200 -22.62809 -21.92628 -21.02824 -20.11745 -19.04957 -18.39906 -17.12467 -16.88848 -16.35994 -16.18702 -15.90415 -15.50704 -15.03137 -14.72853 -14.59557 -14.41554 -14.21402 -13.95089 -13.32084 -13.00423 -12.72735 -12.62602 -12.43413 -12.29487 -12.21004 -11.85088 -11.74827 -11.68688 -11.21326 -11.04359 -10.84823 -10.63549 -10.58281 -10.51123 -10.15662 -9.92186 -9.69494 -9.32070 -9.27941 -9.06287 -8.86452 -8.34196 -8.33663 -5.98958 -4.01852 0.50441 0.94052 1.68286 2.02455 2.35177 2.70611 3.32811 3.37539 3.39487 3.51343 4.04929 4.44282 4.48546 4.55077 4.61911 4.66044 4.75230 5.00509 5.06720 5.09090 5.12836 5.20787 5.23758 5.35856 5.36417 5.43825 5.55093 5.59139 5.59598 5.68368 5.98445 6.01295 6.13244 6.40434 6.48823 6.54094 6.63132 6.71277 6.89419 7.11786 7.54435 7.59219 7.68621 7.83382 8.01339 8.42858 9.05418 9.62059 11.12245 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.044678 B = 0.001833 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.549378 B =15268.050820 C =15678.595878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.053 3.947 4 C -0.074 4.074 5 C 0.091 3.909 6 N -0.518 5.518 7 C 0.246 3.754 8 N -0.629 5.629 9 C 0.511 3.489 10 O -0.497 6.497 11 C -0.130 4.130 12 C -0.105 4.105 13 C -0.111 4.111 14 C 0.020 3.980 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 S 0.261 5.739 24 C -0.333 4.333 25 C 0.138 3.862 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.423 0.577 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.261 0.739 43 H 0.093 0.907 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 10.454 -28.929 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.248 5.248 3 C -0.075 4.075 4 C -0.116 4.116 5 C -0.043 4.043 6 N -0.240 5.240 7 C -0.121 4.121 8 N -0.280 5.280 9 C 0.299 3.701 10 O -0.370 6.370 11 C -0.170 4.170 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.561 4.561 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 S 0.512 5.488 24 C -0.456 4.456 25 C 0.007 3.993 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.262 0.738 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.438 8.771 -28.761 30.104 hybrid contribution -0.635 1.862 1.381 2.404 sum -2.073 10.634 -27.380 29.446 Atomic orbital electron populations 1.22475 0.87173 1.02463 1.01130 1.62629 1.08630 1.13709 1.39847 1.22268 1.00114 0.87643 0.97503 1.21008 1.02641 0.98560 0.89343 1.20198 1.01461 0.91106 0.91498 1.65763 1.23318 1.36932 0.98008 1.23253 1.03125 0.96244 0.89449 1.43183 1.68914 1.15043 1.00836 1.21754 0.75083 0.84416 0.88812 1.90654 1.45178 1.19542 1.81599 1.21833 1.04902 1.02838 0.87423 1.21523 1.03011 0.94583 0.95229 1.21655 1.00286 1.00949 0.91934 1.19090 0.97171 0.91963 0.93464 1.21227 1.48011 0.95303 0.91540 0.92785 1.25037 0.95362 0.95045 0.99091 1.69955 1.48444 1.01598 1.33392 0.86663 0.78566 0.77767 0.85012 1.20280 1.21294 1.20283 1.84982 1.64398 1.06228 0.93147 1.27401 1.15611 0.99890 1.02742 1.20742 1.01405 0.95038 0.82076 0.94662 0.91106 0.91240 0.90133 0.89356 0.89389 0.89837 0.73815 0.88040 0.88051 0.91432 0.91422 0.93280 0.93284 0.96544 0.96538 0.92941 0.88918 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 8.85 60.06 0.53 0.64 16 2 N -0.53 -4.00 5.24 -243.76 -1.28 -5.27 16 3 C 0.05 0.35 5.94 -3.69 -0.02 0.33 16 4 C -0.07 -0.59 5.71 -27.04 -0.15 -0.74 16 5 C 0.09 1.00 6.19 -82.84 -0.51 0.49 16 6 N -0.52 -6.56 10.55 -10.49 -0.11 -6.67 16 7 C 0.25 3.11 8.19 -87.55 -0.72 2.39 16 8 N -0.63 -6.82 5.40 -13.13 -0.07 -6.89 16 9 C 0.51 6.38 7.79 -10.98 -0.09 6.30 16 10 O -0.50 -7.78 13.45 5.55 0.07 -7.70 16 11 C -0.13 -1.48 5.70 -27.89 -0.16 -1.64 16 12 C -0.11 -1.70 4.50 -26.74 -0.12 -1.82 16 13 C -0.11 -2.14 5.15 -26.73 -0.14 -2.28 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 S 0.26 3.18 20.20 -107.50 -2.17 1.01 16 24 C -0.33 -3.50 5.99 -35.46 -0.21 -3.71 16 25 C 0.14 1.13 6.13 -4.68 -0.03 1.11 16 26 H 0.03 0.29 5.65 -51.93 -0.29 0.00 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.45 8.03 -51.93 -0.42 0.03 16 29 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 30 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.62 6.93 -51.93 -0.36 0.26 16 33 H 0.42 3.37 8.82 -40.82 -0.36 3.01 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 37 H 0.07 1.16 8.10 -51.92 -0.42 0.74 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.67 7.97 -51.93 -0.41 0.25 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -33.48 367.82 -11.34 -44.82 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.87 Total: -2.99 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.17 Total: -12.11 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.72 Total: -45.17 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.07 Total: -7.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.17 Total: 1.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.48 -11.34 -44.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588253994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.959 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds