Wall clock time and date at job start Tue Mar 31 2020 13:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46977 * 111.00056 * 2 1 4 4 C 1.53186 * 109.61455 * 52.25982 * 3 2 1 5 5 C 1.52208 * 108.14550 * 50.47397 * 4 3 2 6 6 N 1.32481 * 124.98052 * 163.47439 * 5 4 3 7 7 C 1.29367 * 117.59931 * 180.24988 * 6 5 4 8 8 N 1.39003 * 124.94347 * 179.82024 * 7 6 5 9 9 C 1.34777 * 119.99882 * 179.44381 * 8 7 6 10 10 O 1.21283 * 120.00222 * 0.28137 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27697 * 9 8 7 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47009 * 59.99434 * 19 17 15 21 21 H 1.48498 * 109.47590 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46858 * 299.99875 * 19 17 15 23 23 S 1.70944 * 110.11159 * 359.55574 * 7 6 5 24 24 C 1.34621 * 121.71380 * 343.22920 * 5 4 3 25 25 C 1.47213 * 110.99913 * 123.84611 * 2 1 3 26 26 H 1.09000 * 109.47056 * 300.10498 * 1 2 3 27 27 H 1.08996 * 109.47112 * 60.10960 * 1 2 3 28 28 H 1.08995 * 109.46641 * 180.10738 * 1 2 3 29 29 H 1.08999 * 109.45075 * 172.30916 * 3 2 1 30 30 H 1.09007 * 109.44637 * 292.24810 * 3 2 1 31 31 H 1.08994 * 109.73150 * 170.13350 * 4 3 2 32 32 H 1.09003 * 109.73255 * 290.76547 * 4 3 2 33 33 H 0.97001 * 120.00330 * 359.72797 * 8 7 6 34 34 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 35 35 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 36 36 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 37 37 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 38 38 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 39 39 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 40 40 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 41 41 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 42 42 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.63990 * 167.05646 * 25 2 1 44 44 H 1.08993 * 109.81625 * 46.53551 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3721 0.0000 4 6 1.3555 2.1687 1.1411 5 6 1.4937 1.3573 2.4214 6 7 1.3451 1.8399 3.6462 7 6 1.4998 1.0212 4.6359 8 7 1.3830 1.3635 5.9780 9 6 1.5541 0.4250 6.9301 10 8 1.8150 -0.7170 6.6160 11 6 1.4214 0.7947 8.3851 12 6 1.6619 -0.4441 9.2500 13 6 1.5278 -0.0687 10.7271 14 6 1.7689 -1.3074 11.5922 15 6 1.6362 -0.9377 13.0471 16 1 1.4036 0.0792 13.3268 17 6 1.8128 -1.8974 14.0212 18 7 2.0965 -3.1356 13.6806 19 14 1.6476 -1.4394 15.8246 20 1 0.2812 -0.9167 16.0794 21 1 1.8829 -2.6413 16.6643 22 1 2.6480 -0.3956 16.1638 23 16 1.8614 -0.5444 4.0525 24 6 1.7826 0.0427 2.3984 25 6 1.9966 -0.7655 1.1415 26 1 -0.3633 0.5155 0.8890 27 1 -0.3633 0.5121 -0.8909 28 1 -0.3632 -1.0276 0.0019 29 1 3.0767 1.3460 0.1375 30 1 1.7625 1.8504 -0.9514 31 1 1.8666 3.1247 1.2545 32 1 0.3008 2.3389 0.9246 33 1 1.1744 2.2769 6.2293 34 1 2.1569 1.5596 8.6341 35 1 0.4190 1.1799 8.5721 36 1 0.9268 -1.2094 9.0011 37 1 2.6645 -0.8289 9.0629 38 1 2.2632 0.6964 10.9758 39 1 0.5254 0.3163 10.9146 40 1 1.0338 -2.0728 11.3437 41 1 2.7715 -1.6919 11.4047 42 1 2.2204 -3.8108 14.3658 43 1 3.0619 -0.9473 0.9997 44 1 1.4704 -1.7165 1.2234 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588253994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:49 Heat of formation + Delta-G solvation = -24.396193 kcal Electronic energy + Delta-G solvation = -23812.512104 eV Core-core repulsion = 20275.979483 eV Total energy + Delta-G solvation = -3536.532621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78951 -41.17320 -38.75425 -36.73343 -35.93545 -34.65622 -32.27823 -31.86206 -31.10996 -28.32669 -27.53837 -25.64943 -25.09964 -24.00695 -22.71003 -22.20124 -21.60958 -19.84379 -19.31512 -18.42325 -17.92753 -17.77291 -17.35469 -16.58310 -16.48412 -16.38128 -15.82048 -15.61039 -15.52268 -15.12522 -14.86365 -14.54205 -14.13933 -13.86956 -13.66682 -13.56749 -13.34325 -13.28993 -12.90580 -12.81046 -12.78820 -12.40535 -12.33303 -12.19306 -12.17428 -11.94956 -11.68133 -11.36188 -11.33551 -11.17303 -10.98873 -10.83129 -10.53701 -10.20444 -9.47903 -9.19762 -8.18341 -6.30109 -0.39269 0.05033 0.81805 1.10436 1.40531 1.44022 1.44512 1.51920 1.80839 2.41969 2.91534 3.14536 3.29203 3.56004 3.87351 3.95972 3.96191 4.07661 4.11153 4.14765 4.39201 4.49079 4.54697 4.57999 4.64628 4.64709 4.77305 4.80118 4.82165 4.86434 4.89652 5.03081 5.05570 5.17141 5.23767 5.32829 5.37844 5.57362 5.79389 5.81781 5.89375 5.89982 5.98734 6.25996 6.66057 6.67538 6.88589 7.39456 8.93429 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.044678 B = 0.001833 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.549378 B =15268.050820 C =15678.595878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.527 5.527 3 C 0.055 3.945 4 C -0.070 4.070 5 C 0.072 3.928 6 N -0.526 5.526 7 C 0.231 3.769 8 N -0.615 5.615 9 C 0.514 3.486 10 O -0.535 6.535 11 C -0.117 4.117 12 C -0.098 4.098 13 C -0.097 4.097 14 C 0.018 3.982 15 C -0.542 4.542 16 H 0.066 0.934 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.265 1.265 23 S 0.226 5.774 24 C -0.320 4.320 25 C 0.136 3.864 26 H 0.020 0.980 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.437 0.563 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.062 0.938 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.262 0.738 43 H 0.101 0.899 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 12.886 -29.661 32.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.249 5.249 3 C -0.073 4.073 4 C -0.111 4.111 5 C -0.061 4.061 6 N -0.249 5.249 7 C -0.136 4.136 8 N -0.267 5.267 9 C 0.303 3.697 10 O -0.410 6.410 11 C -0.156 4.156 12 C -0.136 4.136 13 C -0.134 4.134 14 C -0.019 4.019 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.190 1.190 23 S 0.477 5.523 24 C -0.444 4.444 25 C 0.005 3.995 26 H 0.039 0.961 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.279 0.721 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.004 0.996 41 H 0.004 0.996 42 H 0.071 0.929 43 H 0.119 0.881 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.961 11.259 -29.518 31.654 hybrid contribution -0.474 1.078 1.517 1.921 sum -2.436 12.338 -28.001 30.696 Atomic orbital electron populations 1.22501 0.86734 1.02673 1.01202 1.62690 1.09025 1.14275 1.38890 1.22354 0.99989 0.86993 0.97974 1.21112 1.03227 0.98575 0.88159 1.20786 1.01450 0.91798 0.92019 1.65821 1.23330 1.37166 0.98588 1.23411 1.03911 0.96218 0.90049 1.42982 1.68209 1.15470 1.00052 1.21880 0.74429 0.84002 0.89382 1.90660 1.47003 1.21188 1.82189 1.21703 1.07596 1.00813 0.85523 1.21292 1.01541 0.96539 0.94240 1.21445 1.01383 0.97996 0.92612 1.19058 0.94449 0.94103 0.94308 1.21739 1.47570 0.95903 0.92815 0.91593 1.26065 0.94901 0.94891 1.04516 1.70114 1.49620 1.02892 1.35076 0.85470 0.79221 0.77640 0.78525 1.18991 1.21172 1.18994 1.85091 1.65019 1.07200 0.95007 1.27653 1.14457 0.99944 1.02319 1.20887 1.02127 0.95109 0.81336 0.96135 0.89416 0.91066 0.90095 0.87074 0.88764 0.89297 0.72116 0.85059 0.85081 0.93188 0.93171 0.91893 0.91902 0.99582 0.99571 0.92894 0.88058 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.85 127.69 1.13 1.34 16 2 N -0.53 -7.03 5.24 -925.11 -4.85 -11.87 16 3 C 0.06 0.60 5.94 86.35 0.51 1.12 16 4 C -0.07 -0.98 5.71 30.39 0.17 -0.81 16 5 C 0.07 1.52 6.19 42.12 0.26 1.78 16 6 N -0.53 -12.93 10.55 -187.11 -1.97 -14.91 16 7 C 0.23 5.75 8.19 179.28 1.47 7.21 16 8 N -0.62 -12.64 5.40 -313.83 -1.70 -14.33 16 9 C 0.51 12.42 7.79 87.66 0.68 13.10 16 10 O -0.53 -17.09 13.45 -3.04 -0.04 -17.13 16 11 C -0.12 -2.41 5.70 29.85 0.17 -2.24 16 12 C -0.10 -3.14 4.50 30.59 0.14 -3.00 16 13 C -0.10 -3.68 5.15 30.59 0.16 -3.52 16 14 C 0.02 0.95 4.97 29.85 0.15 1.10 16 15 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 16 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 17 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 18 N -0.94 -58.15 13.29 21.44 0.28 -57.87 16 19 Si 0.97 44.25 29.54 68.60 2.03 46.27 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 S 0.23 5.61 20.20 -56.49 -1.14 4.47 16 24 C -0.32 -6.58 5.99 24.94 0.15 -6.43 16 25 C 0.14 2.10 6.13 85.58 0.52 2.63 16 26 H 0.02 0.31 5.65 -2.39 -0.01 0.30 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.83 8.03 -2.39 -0.02 0.81 16 29 H 0.08 0.90 8.06 -2.39 -0.02 0.88 16 30 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.16 6.93 -2.39 -0.02 1.15 16 33 H 0.44 6.09 8.82 -92.71 -0.82 5.27 16 34 H 0.13 1.99 8.14 -2.39 -0.02 1.98 16 35 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.05 1.77 8.10 -2.38 -0.02 1.75 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 42 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 1.35 7.97 -2.39 -0.02 1.33 16 Total: -1.00 -74.49 367.82 -0.99 -75.47 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.19 Total: 8.07 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 6.21 Total: -18.17 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -8.23 Total: -98.98 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.04 Total: -17.13 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.14 Total: 4.47 kcal Total: -74.49 -0.99 -75.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588253994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.079 kcal (2) G-P(sol) polarization free energy of solvation -74.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds