Wall clock time and date at job start Tue Mar 31 2020 14:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 7 7 N 1.40071 * 126.04919 * 269.69130 * 6 5 3 8 8 C 1.30833 * 108.36708 * 179.81219 * 7 6 5 9 9 C 1.40253 * 108.33444 * 0.44499 * 8 7 6 10 10 N 1.40765 * 126.08326 * 179.68030 * 9 8 7 11 11 C 1.34771 * 119.99919 * 0.03969 * 10 9 8 12 12 O 1.21307 * 120.00207 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00383 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47265 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46968 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47274 * 179.97438 * 15 14 13 17 17 C 1.50690 * 109.47260 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00504 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00183 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99895 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00264 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47019 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47495 * 119.99896 * 21 19 17 24 24 H 1.48497 * 109.47074 * 239.99876 * 21 19 17 25 25 C 1.35758 * 107.83930 * 359.71208 * 9 8 7 26 26 C 1.50700 * 126.22044 * 180.02562 * 25 9 8 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 31 31 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 32 32 H 1.07998 * 125.83750 * 180.17249 * 8 7 6 33 33 H 0.96997 * 120.00149 * 180.02562 * 10 9 8 34 34 H 1.09005 * 109.46758 * 300.00045 * 13 11 10 35 35 H 1.09000 * 109.46817 * 59.99756 * 13 11 10 36 36 H 1.08999 * 109.47095 * 300.00166 * 14 13 11 37 37 H 1.08999 * 109.46677 * 60.00527 * 14 13 11 38 38 H 1.09005 * 109.46868 * 300.00015 * 15 14 13 39 39 H 1.09000 * 109.47005 * 59.99907 * 15 14 13 40 40 H 1.08999 * 109.46944 * 300.00213 * 16 15 14 41 41 H 1.09005 * 109.46734 * 59.99993 * 16 15 14 42 42 H 0.97001 * 120.00352 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47166 * 269.97848 * 26 25 9 44 44 H 1.08999 * 109.46841 * 29.97583 * 26 25 9 45 45 H 1.09000 * 109.47222 * 149.97705 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 7 3.9816 2.6799 -0.0117 7 7 4.2166 3.4656 -1.1472 8 6 4.5657 4.6637 -0.7544 9 6 4.5758 4.6828 0.6479 10 7 4.9049 5.7848 1.4597 11 6 5.2501 6.9587 0.8947 12 8 5.2767 7.0658 -0.3133 13 6 5.6019 8.1386 1.7637 14 6 5.9537 9.3365 0.8793 15 6 6.3115 10.5342 1.7616 16 6 6.6639 11.7319 0.8772 17 6 7.0156 12.9117 1.7462 18 1 6.9900 12.8170 2.8218 19 6 7.3693 14.1125 1.1682 20 7 7.4001 14.2281 -0.1415 21 14 7.8060 15.5749 2.2454 22 1 7.6955 15.1873 3.6747 23 1 9.1971 16.0057 1.9550 24 1 6.8720 16.6942 1.9629 25 6 4.2125 3.4494 1.0833 26 6 4.0877 3.0133 2.5204 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9595 0.7833 0.8836 31 1 3.9525 0.7785 -0.8964 32 1 4.8091 5.4948 -1.3997 33 1 4.8831 5.6993 2.4256 34 1 4.7505 8.3908 2.3959 35 1 6.4574 7.8862 2.3901 36 1 6.8052 9.0839 0.2474 37 1 5.0983 9.5890 0.2526 38 1 5.4602 10.7869 2.3938 39 1 7.1669 10.2813 2.3880 40 1 7.5152 11.4789 0.2453 41 1 5.8087 11.9848 0.2505 42 1 7.6485 15.0730 -0.5481 43 1 5.0430 2.6166 2.8641 44 1 3.8065 3.8676 3.1362 45 1 3.3233 2.2404 2.6005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588689880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:16 Heat of formation + Delta-G solvation = -57.328946 kcal Electronic energy + Delta-G solvation = -26040.992121 eV Core-core repulsion = 22060.278558 eV Total energy + Delta-G solvation = -3980.713563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83664 -40.82072 -39.51043 -37.08517 -35.22934 -34.74204 -33.80867 -32.62003 -31.85342 -29.87696 -28.91140 -27.16351 -27.03360 -25.43808 -22.86213 -22.44654 -21.37841 -20.30836 -19.95702 -19.87002 -18.42652 -17.56261 -17.26694 -16.94849 -16.63466 -16.16649 -15.87759 -15.80261 -15.15396 -14.47787 -14.40952 -14.14305 -14.02898 -13.94201 -13.85590 -13.26796 -13.13264 -12.89919 -12.65314 -12.63426 -12.52987 -12.28264 -11.68976 -11.57879 -11.38426 -11.28343 -10.98446 -10.98394 -10.81125 -10.52532 -10.46579 -10.39846 -9.80119 -9.58991 -9.54331 -9.21091 -8.95542 -8.28667 -7.86799 -5.93261 -3.95681 1.22219 1.56197 1.76908 2.31794 2.43472 3.04606 3.08595 3.34671 3.41881 3.45678 4.00211 4.11222 4.24020 4.44337 4.50690 4.56291 4.56956 4.65389 4.72597 4.98190 4.98988 5.02567 5.22617 5.29134 5.36011 5.42271 5.44475 5.55751 5.73112 5.84463 6.02452 6.15053 6.30817 6.51992 6.55922 6.73667 6.85776 7.03745 7.12157 7.21659 7.29361 7.48963 7.76716 7.92601 8.08342 8.19012 8.50103 9.12337 9.67978 11.18051 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037773 B = 0.001670 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.097949 B =16762.523033 C =16897.335275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.437 3.563 4 O -0.482 6.482 5 C 0.155 3.845 6 N -0.371 5.371 7 N -0.277 5.277 8 C 0.066 3.934 9 C 0.018 3.982 10 N -0.650 5.650 11 C 0.514 3.486 12 O -0.522 6.522 13 C -0.135 4.135 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.046 3.954 26 C -0.087 4.087 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.211 0.789 33 H 0.408 0.592 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 -34.484 6.129 36.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.277 3.723 4 O -0.367 6.367 5 C 0.030 3.970 6 N -0.157 5.157 7 N -0.096 5.096 8 C -0.122 4.122 9 C -0.086 4.086 10 N -0.296 5.296 11 C 0.303 3.697 12 O -0.396 6.396 13 C -0.175 4.175 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.081 4.081 26 C -0.146 4.146 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.227 0.773 33 H 0.243 0.757 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.805 -34.788 4.137 36.661 hybrid contribution 0.017 1.350 1.681 2.156 sum -10.788 -33.438 5.818 35.614 Atomic orbital electron populations 1.23328 0.75514 1.03992 1.02889 1.86471 1.24047 1.32729 1.84252 1.24148 0.92396 0.82068 0.73692 1.90779 1.66541 1.36233 1.43156 1.20819 0.87926 0.79917 1.08305 1.47570 1.55294 1.09104 1.03767 1.77439 1.21851 1.03321 1.07035 1.24609 0.98421 0.95538 0.93674 1.17451 1.11826 0.87944 0.91397 1.43072 1.68189 1.09124 1.09245 1.21231 0.75660 0.83264 0.89531 1.90588 1.50915 1.83039 1.15106 1.21786 1.03281 0.93259 0.99141 1.21471 1.02243 0.92750 0.97734 1.21650 0.99653 0.95174 0.98324 1.19103 0.96822 0.91121 0.94774 1.21325 1.45513 0.95910 0.93083 0.92702 1.25042 0.95782 0.98847 0.94907 1.69984 1.48817 1.25494 1.09116 0.86562 0.77999 0.82824 0.80747 1.19793 1.21069 1.21081 1.20342 1.05982 0.91100 0.90652 1.20376 1.02885 1.02715 0.88590 0.91642 0.87678 0.91707 0.84767 0.84277 0.77295 0.75668 0.88837 0.88818 0.91628 0.91637 0.93450 0.93442 0.96542 0.96554 0.93114 0.89904 0.89799 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.33 10.57 -39.26 -0.41 -2.74 16 3 C 0.44 3.63 8.03 36.00 0.29 3.92 16 4 O -0.48 -6.09 16.18 -18.76 -0.30 -6.39 16 5 C 0.15 0.93 6.68 -5.20 -0.03 0.90 16 6 N -0.37 -3.85 3.13 -58.00 -0.18 -4.03 16 7 N -0.28 -3.81 12.56 30.70 0.39 -3.42 16 8 C 0.07 0.95 10.84 -17.22 -0.19 0.76 16 9 C 0.02 0.22 6.86 -83.88 -0.58 -0.36 16 10 N -0.65 -6.95 5.47 -10.04 -0.05 -7.01 16 11 C 0.51 7.01 7.80 -10.99 -0.09 6.92 16 12 O -0.52 -9.05 13.14 5.53 0.07 -8.98 16 13 C -0.13 -1.69 5.70 -27.88 -0.16 -1.85 16 14 C -0.10 -1.81 4.50 -26.73 -0.12 -1.93 16 15 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 16 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 17 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 18 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 21 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 25 C 0.05 0.45 6.98 -81.72 -0.57 -0.12 16 26 C -0.09 -0.46 9.73 36.01 0.35 -0.11 16 27 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 28 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 30 H 0.13 0.28 7.69 -51.93 -0.40 -0.12 16 31 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.21 3.25 5.92 -52.49 -0.31 2.94 16 33 H 0.41 2.84 8.08 -40.82 -0.33 2.51 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.37 7.61 -51.93 -0.40 -0.03 16 45 H 0.07 0.30 7.76 -51.93 -0.40 -0.10 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -38.90 386.42 -6.54 -45.44 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.87 Total: -2.32 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.71 Total: -6.45 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.89 Total: -41.31 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.65 Total: -18.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.90 -6.54 -45.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588689880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.892 kcal (2) G-P(sol) polarization free energy of solvation -38.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds