Wall clock time and date at job start Tue Mar 31 2020 14:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 7 7 N 1.40071 * 126.04919 * 269.69130 * 6 5 3 8 8 C 1.30833 * 108.36708 * 179.81219 * 7 6 5 9 9 C 1.40253 * 108.33444 * 0.44499 * 8 7 6 10 10 N 1.40765 * 126.08326 * 179.68030 * 9 8 7 11 11 C 1.34771 * 119.99919 * 0.03969 * 10 9 8 12 12 O 1.21307 * 120.00207 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00383 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47265 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46968 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47274 * 179.97438 * 15 14 13 17 17 C 1.50690 * 109.47260 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00504 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00183 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99895 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00264 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47019 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47495 * 119.99896 * 21 19 17 24 24 H 1.48497 * 109.47074 * 239.99876 * 21 19 17 25 25 C 1.35758 * 107.83930 * 359.71208 * 9 8 7 26 26 C 1.50700 * 126.22044 * 180.02562 * 25 9 8 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 31 31 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 32 32 H 1.07998 * 125.83750 * 180.17249 * 8 7 6 33 33 H 0.96997 * 120.00149 * 180.02562 * 10 9 8 34 34 H 1.09005 * 109.46758 * 300.00045 * 13 11 10 35 35 H 1.09000 * 109.46817 * 59.99756 * 13 11 10 36 36 H 1.08999 * 109.47095 * 300.00166 * 14 13 11 37 37 H 1.08999 * 109.46677 * 60.00527 * 14 13 11 38 38 H 1.09005 * 109.46868 * 300.00015 * 15 14 13 39 39 H 1.09000 * 109.47005 * 59.99907 * 15 14 13 40 40 H 1.08999 * 109.46944 * 300.00213 * 16 15 14 41 41 H 1.09005 * 109.46734 * 59.99993 * 16 15 14 42 42 H 0.97001 * 120.00352 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47166 * 269.97848 * 26 25 9 44 44 H 1.08999 * 109.46841 * 29.97583 * 26 25 9 45 45 H 1.09000 * 109.47222 * 149.97705 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 7 3.9816 2.6799 -0.0117 7 7 4.2166 3.4656 -1.1472 8 6 4.5657 4.6637 -0.7544 9 6 4.5758 4.6828 0.6479 10 7 4.9049 5.7848 1.4597 11 6 5.2501 6.9587 0.8947 12 8 5.2767 7.0658 -0.3133 13 6 5.6019 8.1386 1.7637 14 6 5.9537 9.3365 0.8793 15 6 6.3115 10.5342 1.7616 16 6 6.6639 11.7319 0.8772 17 6 7.0156 12.9117 1.7462 18 1 6.9900 12.8170 2.8218 19 6 7.3693 14.1125 1.1682 20 7 7.4001 14.2281 -0.1415 21 14 7.8060 15.5749 2.2454 22 1 7.6955 15.1873 3.6747 23 1 9.1971 16.0057 1.9550 24 1 6.8720 16.6942 1.9629 25 6 4.2125 3.4494 1.0833 26 6 4.0877 3.0133 2.5204 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9595 0.7833 0.8836 31 1 3.9525 0.7785 -0.8964 32 1 4.8091 5.4948 -1.3997 33 1 4.8831 5.6993 2.4256 34 1 4.7505 8.3908 2.3959 35 1 6.4574 7.8862 2.3901 36 1 6.8052 9.0839 0.2474 37 1 5.0983 9.5890 0.2526 38 1 5.4602 10.7869 2.3938 39 1 7.1669 10.2813 2.3880 40 1 7.5152 11.4789 0.2453 41 1 5.8087 11.9848 0.2505 42 1 7.6485 15.0730 -0.5481 43 1 5.0430 2.6166 2.8641 44 1 3.8065 3.8676 3.1362 45 1 3.3233 2.2404 2.6005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588689880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:15 Heat of formation + Delta-G solvation = -84.614280 kcal Electronic energy + Delta-G solvation = -26042.175302 eV Core-core repulsion = 22060.278558 eV Total energy + Delta-G solvation = -3981.896744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.65433 -41.50142 -40.53214 -37.72583 -36.69271 -35.91872 -34.68019 -34.46419 -32.59943 -31.44106 -29.58239 -28.13453 -27.63819 -26.96383 -24.41826 -23.27758 -22.46866 -21.61370 -21.14269 -20.76851 -19.02933 -18.44767 -18.28687 -17.95777 -17.67446 -17.45713 -16.93886 -16.61736 -16.47134 -16.02376 -15.37673 -15.23086 -15.04841 -14.64957 -14.52389 -14.50756 -13.90125 -13.79684 -13.59373 -13.55602 -13.47056 -13.25130 -13.12586 -13.04245 -12.83951 -12.29660 -12.14332 -12.11404 -12.06668 -11.92191 -11.84614 -11.68382 -11.32973 -11.31547 -11.10430 -10.75250 -10.53910 -10.37310 -8.73031 -8.17036 -6.29082 0.46906 0.94698 1.10440 1.33247 1.41610 1.42571 1.56015 1.81028 2.08945 2.19065 2.43469 3.15854 3.48008 3.60827 3.64759 3.80867 3.97202 4.06737 4.08300 4.20046 4.24496 4.25161 4.30241 4.45021 4.66984 4.69866 4.72289 4.73116 4.87889 4.88146 4.92790 4.96735 5.14362 5.19112 5.23408 5.37012 5.42611 5.60219 5.68646 5.81645 5.90604 5.91602 6.27506 6.43384 6.52242 6.61516 6.90061 7.26083 7.40617 8.95354 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037773 B = 0.001670 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.097949 B =16762.523033 C =16897.335275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.443 3.557 4 O -0.534 6.534 5 C 0.145 3.855 6 N -0.367 5.367 7 N -0.310 5.310 8 C 0.038 3.962 9 C -0.018 4.018 10 N -0.628 5.628 11 C 0.510 3.490 12 O -0.571 6.571 13 C -0.121 4.121 14 C -0.097 4.097 15 C -0.095 4.095 16 C 0.017 3.983 17 C -0.540 4.540 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.256 1.256 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.071 3.929 26 C -0.089 4.089 27 H 0.053 0.947 28 H 0.138 0.862 29 H 0.063 0.937 30 H 0.185 0.815 31 H 0.159 0.841 32 H 0.184 0.816 33 H 0.428 0.572 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.063 0.937 40 H -0.015 1.015 41 H -0.017 1.017 42 H 0.262 0.738 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.438 -36.840 10.129 39.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.267 6.267 3 C 0.286 3.714 4 O -0.422 6.422 5 C 0.023 3.977 6 N -0.153 5.153 7 N -0.131 5.131 8 C -0.149 4.149 9 C -0.121 4.121 10 N -0.276 5.276 11 C 0.299 3.701 12 O -0.450 6.450 13 C -0.160 4.160 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.021 4.021 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.180 1.180 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.057 4.057 26 C -0.147 4.147 27 H 0.072 0.928 28 H 0.156 0.844 29 H 0.082 0.918 30 H 0.202 0.798 31 H 0.177 0.823 32 H 0.201 0.799 33 H 0.267 0.733 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.071 0.929 43 H 0.131 0.869 44 H 0.115 0.885 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.877 -37.219 8.179 39.629 hybrid contribution -0.042 1.900 0.391 1.940 sum -10.919 -35.319 8.569 37.948 Atomic orbital electron populations 1.23569 0.74516 1.05968 1.02294 1.86477 1.25014 1.31617 1.83577 1.24529 0.93122 0.81726 0.72067 1.90773 1.67753 1.37867 1.45832 1.21423 0.86561 0.77964 1.11714 1.47960 1.53926 1.10341 1.03114 1.77333 1.23115 1.03655 1.09013 1.24363 0.99943 0.95516 0.95064 1.17605 1.14384 0.89459 0.90702 1.42745 1.66871 1.07871 1.10086 1.21400 0.75433 0.84290 0.88945 1.90597 1.53278 1.83895 1.17216 1.21645 1.05741 0.90477 0.98171 1.21259 1.00521 0.94072 0.97689 1.21445 1.00752 0.93460 0.97641 1.19077 0.94256 0.93765 0.94959 1.21806 1.45338 0.96785 0.93912 0.91450 1.26098 0.95523 1.02483 0.96359 1.70144 1.49839 1.26532 1.11372 0.85331 0.77677 0.78310 0.79293 1.17976 1.20518 1.20615 1.21096 1.02290 0.89819 0.92503 1.20655 1.05050 1.03875 0.85126 0.92817 0.84397 0.91826 0.79774 0.82311 0.79890 0.73254 0.85931 0.85583 0.93670 0.93945 0.92009 0.91811 0.99671 0.99827 0.92930 0.86941 0.88471 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.43 16 2 O -0.35 -3.79 10.57 -51.41 -0.54 -4.33 16 3 C 0.44 6.61 8.03 71.23 0.57 7.18 16 4 O -0.53 -13.28 16.18 21.94 0.36 -12.93 16 5 C 0.15 1.35 6.68 85.63 0.57 1.92 16 6 N -0.37 -7.12 3.13 -337.41 -1.05 -8.18 16 7 N -0.31 -8.85 12.56 -56.77 -0.71 -9.57 16 8 C 0.04 1.18 10.84 85.33 0.92 2.10 16 9 C -0.02 -0.43 6.86 37.62 0.26 -0.17 16 10 N -0.63 -12.62 5.47 -304.04 -1.66 -14.29 16 11 C 0.51 13.88 7.80 87.66 0.68 14.56 16 12 O -0.57 -21.22 13.14 -3.11 -0.04 -21.26 16 13 C -0.12 -2.83 5.70 29.85 0.17 -2.66 16 14 C -0.10 -3.46 4.50 30.60 0.14 -3.32 16 15 C -0.10 -3.86 5.15 30.59 0.16 -3.70 16 16 C 0.02 0.91 4.97 29.84 0.15 1.06 16 17 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 18 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 19 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 20 N -0.94 -59.54 13.29 21.45 0.28 -59.26 16 21 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 C 0.07 1.24 6.98 41.37 0.29 1.53 16 26 C -0.09 -0.54 9.73 71.24 0.69 0.16 16 27 H 0.05 0.56 8.13 -2.38 -0.02 0.54 16 28 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.06 0.53 8.13 -2.39 -0.02 0.52 16 30 H 0.19 -0.15 7.69 -2.38 -0.02 -0.17 16 31 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.18 6.49 5.92 -2.91 -0.02 6.47 16 33 H 0.43 4.63 8.08 -92.71 -0.75 3.88 16 34 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 42 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.10 0.40 7.61 -2.39 -0.02 0.38 16 45 H 0.08 0.32 7.76 -2.39 -0.02 0.30 16 Total: -1.00 -91.75 386.42 5.40 -86.35 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.25 Total: 7.50 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 6.50 Total: -11.11 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -3.15 Total: -91.29 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.23 Total: -38.53 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -91.75 5.40 -86.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588689880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.736 kcal (2) G-P(sol) polarization free energy of solvation -91.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds