Wall clock time and date at job start Tue Mar 31 2020 14:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99950 * 2 1 4 4 C 1.53003 * 109.47196 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47150 * 66.05691 * 4 3 2 6 6 C 1.37098 * 120.00109 * 266.65043 * 5 4 3 7 7 H 1.08006 * 120.00464 * 142.11016 * 6 5 4 8 8 C 1.38947 * 119.99946 * 322.11182 * 6 5 4 9 9 N 1.31418 * 120.00549 * 157.74981 * 8 6 5 10 10 Si 1.86804 * 120.00206 * 337.75213 * 8 6 5 11 11 H 1.48502 * 109.46955 * 95.34112 * 10 8 6 12 12 H 1.48493 * 109.47150 * 215.34437 * 10 8 6 13 13 H 1.48504 * 109.46519 * 335.34273 * 10 8 6 14 14 C 1.34779 * 120.00091 * 86.65059 * 5 4 3 15 15 O 1.21284 * 119.99885 * 359.97438 * 14 5 4 16 16 C 1.50707 * 119.99755 * 180.02562 * 14 5 4 17 17 O 1.42902 * 109.46448 * 180.02562 * 16 14 5 18 18 C 1.42903 * 113.99491 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.46982 * 180.02562 * 18 17 16 20 20 C 1.38265 * 119.94172 * 269.72107 * 19 18 17 21 21 C 1.38152 * 120.05566 * 179.72563 * 20 19 18 22 22 C 1.38735 * 119.93807 * 0.56924 * 21 20 19 23 23 O 1.35899 * 120.05151 * 179.68208 * 22 21 20 24 24 C 1.42898 * 117.00156 * 0.02562 * 23 22 21 25 25 C 1.38723 * 119.89207 * 359.70766 * 22 21 20 26 26 C 1.38147 * 119.94797 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.46870 * 60.00332 * 1 2 3 28 28 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47302 * 300.00201 * 1 2 3 30 30 H 1.08995 * 109.47237 * 59.99920 * 3 2 1 31 31 H 1.09006 * 109.47348 * 299.99749 * 3 2 1 32 32 H 1.09001 * 109.47295 * 306.05831 * 4 3 2 33 33 H 1.09003 * 109.46903 * 186.05724 * 4 3 2 34 34 H 0.96996 * 120.00482 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47188 * 60.00405 * 16 14 5 36 36 H 1.08995 * 109.47146 * 299.99670 * 16 14 5 37 37 H 1.08998 * 109.47711 * 59.99556 * 18 17 16 38 38 H 1.09006 * 109.47055 * 299.99612 * 18 17 16 39 39 H 1.08000 * 119.97142 * 359.97438 * 20 19 18 40 40 H 1.07992 * 120.02803 * 180.25484 * 21 20 19 41 41 H 1.08997 * 109.47704 * 300.00366 * 24 23 22 42 42 H 1.09009 * 109.46650 * 60.00378 * 24 23 22 43 43 H 1.08996 * 109.47439 * 179.97438 * 24 23 22 44 44 H 1.08007 * 120.03359 * 179.97438 * 25 22 21 45 45 H 1.08001 * 119.97852 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9775 0.5876 -1.2632 6 6 4.1650 -0.7676 -1.3521 7 1 3.8902 -1.2928 -2.2550 8 6 4.7085 -1.4655 -0.2806 9 7 4.4985 -2.7575 -0.1633 10 14 5.7378 -0.5673 0.9935 11 1 4.8796 -0.1866 2.1441 12 1 6.8302 -1.4565 1.4636 13 1 6.3217 0.6553 0.3856 14 6 4.1999 1.3705 -2.3375 15 8 4.0336 2.5694 -2.2591 16 6 4.6541 0.7561 -3.6366 17 8 4.8204 1.7829 -4.6165 18 6 5.2511 1.3043 -5.8923 19 6 5.3936 2.4654 -6.8423 20 6 4.3181 2.8593 -7.6169 21 6 4.4444 3.9269 -8.4845 22 6 5.6552 4.5966 -8.5867 23 8 5.7838 5.6430 -9.4442 24 6 4.6311 6.0002 -10.2095 25 6 6.7343 4.1958 -7.8127 26 6 6.6010 3.1317 -6.9418 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8503 0.5529 0.8299 33 1 3.9783 2.1748 0.1078 34 1 4.8783 -3.2447 0.5845 35 1 3.9066 0.0418 -3.9816 36 1 5.6035 0.2432 -3.4835 37 1 4.5156 0.6018 -6.2841 38 1 6.2127 0.8021 -5.7862 39 1 3.3774 2.3343 -7.5407 40 1 3.6029 4.2368 -9.0863 41 1 4.3265 5.1535 -10.8245 42 1 3.8179 6.2715 -9.5362 43 1 4.8695 6.8486 -10.8510 44 1 7.6781 4.7152 -7.8907 45 1 7.4408 2.8196 -6.3386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:39 Heat of formation + Delta-G solvation = -115.207956 kcal Electronic energy + Delta-G solvation = -27041.338801 eV Core-core repulsion = 23025.822664 eV Total energy + Delta-G solvation = -4015.516137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23125 -39.04376 -38.04356 -37.13731 -36.42477 -34.71447 -31.97150 -31.42329 -31.04475 -29.82942 -27.93753 -26.97553 -25.76915 -25.03319 -24.41749 -22.71395 -22.26305 -21.21707 -19.06824 -18.28790 -17.26703 -16.66108 -16.48583 -16.03941 -15.90178 -15.75074 -15.53506 -15.28884 -15.09405 -14.55691 -14.45304 -14.33790 -13.96877 -13.71739 -13.57650 -13.27096 -12.85754 -12.73609 -12.50756 -12.19212 -12.07595 -11.80768 -11.69752 -11.45438 -11.30841 -11.21574 -10.93717 -10.87743 -10.82125 -10.72414 -10.12715 -9.91940 -9.22259 -9.14063 -9.06121 -9.03504 -8.52170 -8.21160 -7.79721 -6.43356 -4.01156 1.28738 1.32447 3.07373 3.09798 3.23317 3.30987 3.50610 3.70205 3.99421 4.17915 4.43394 4.65757 4.71303 4.78365 4.88735 4.90796 4.98805 5.19680 5.23167 5.24655 5.33223 5.50178 5.60287 5.62280 5.67146 5.69310 5.80619 5.86859 5.94041 5.94269 5.98999 6.05066 6.07935 6.15210 6.18716 6.28352 6.31285 6.48916 6.63297 6.67727 7.24998 7.33624 7.55751 7.81466 8.09008 8.25902 8.99943 9.37054 9.68518 10.67544 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.002654 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.858420 B =10547.093783 C =11263.495565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.055 3.945 4 C 0.104 3.896 5 N -0.454 5.454 6 C -0.338 4.338 7 H 0.101 0.899 8 C 0.075 3.925 9 N -0.854 5.854 10 Si 0.870 3.130 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.261 1.261 14 C 0.481 3.519 15 O -0.584 6.584 16 C 0.064 3.936 17 O -0.364 6.364 18 C 0.103 3.897 19 C -0.116 4.116 20 C -0.058 4.058 21 C -0.212 4.212 22 C 0.125 3.875 23 O -0.320 6.320 24 C 0.028 3.972 25 C -0.155 4.155 26 C -0.057 4.057 27 H 0.032 0.968 28 H 0.080 0.920 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.274 0.726 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 9.140 -13.335 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.023 4.023 4 C -0.019 4.019 5 N -0.177 5.177 6 C -0.465 4.465 7 H 0.119 0.881 8 C -0.133 4.133 9 N -0.488 5.488 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.185 1.185 14 C 0.270 3.730 15 O -0.468 6.468 16 C -0.015 4.015 17 O -0.283 6.283 18 C 0.026 3.974 19 C -0.116 4.116 20 C -0.076 4.076 21 C -0.230 4.230 22 C 0.080 3.920 23 O -0.233 6.233 24 C -0.068 4.068 25 C -0.174 4.174 26 C -0.076 4.076 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.847 9.682 -13.193 16.386 hybrid contribution -0.083 0.033 0.726 0.731 sum -0.930 9.715 -12.467 15.832 Atomic orbital electron populations 1.22655 0.83040 1.02057 0.98751 1.88208 1.17680 1.26698 1.95024 1.22872 0.94962 0.85146 0.99361 1.21710 0.92230 0.99146 0.88837 1.43558 1.58329 1.07459 1.08308 1.18933 1.42792 0.79847 1.04895 0.88124 1.25237 0.95823 0.95088 0.97137 1.69781 1.40259 1.08233 1.30567 0.87052 0.80702 0.80629 0.81872 1.20070 1.21429 1.18533 1.19980 0.80855 0.86265 0.85886 1.90561 1.56311 1.14922 1.84986 1.22047 1.01725 0.89777 0.87926 1.88039 1.88385 1.32746 1.19098 1.21234 0.99252 0.93170 0.83700 1.19573 0.94147 0.99392 0.98535 1.20876 0.98035 0.95007 0.93665 1.21183 0.97153 1.00101 1.04592 1.19051 0.94249 0.87728 0.90936 1.86053 1.37837 1.46983 1.52472 1.23039 0.87937 1.00886 0.94901 1.20391 0.98137 0.99844 0.99010 1.20918 0.97472 0.93429 0.95740 0.94910 0.90099 0.95192 0.93902 0.93222 0.90468 0.89912 0.91625 0.91102 0.90362 0.92652 0.92484 0.85545 0.85503 0.92686 0.92587 0.88382 0.85174 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.73 10.38 -35.23 -0.37 -8.10 16 3 C 0.05 1.10 6.26 37.16 0.23 1.34 16 4 C 0.10 2.35 4.47 -4.04 -0.02 2.33 16 5 N -0.45 -11.08 2.14 -114.81 -0.25 -11.32 16 6 C -0.34 -8.72 8.76 -14.93 -0.13 -8.86 16 7 H 0.10 2.70 7.24 -52.48 -0.38 2.32 16 8 C 0.08 1.98 5.28 -17.47 -0.09 1.88 16 9 N -0.85 -23.47 13.96 55.50 0.77 -22.70 16 10 Si 0.87 20.38 25.06 -169.99 -4.26 16.12 16 11 H -0.27 -6.23 6.67 56.52 0.38 -5.85 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 14 C 0.48 11.57 7.70 -10.98 -0.08 11.48 16 15 O -0.58 -15.32 16.13 -14.36 -0.23 -15.56 16 16 C 0.06 1.30 5.11 36.01 0.18 1.49 16 17 O -0.36 -7.15 9.86 -55.14 -0.54 -7.69 16 18 C 0.10 1.52 6.06 36.01 0.22 1.74 16 19 C -0.12 -1.63 5.51 -104.60 -0.58 -2.21 16 20 C -0.06 -0.74 9.69 -39.60 -0.38 -1.13 16 21 C -0.21 -2.48 9.04 -39.43 -0.36 -2.84 16 22 C 0.13 1.55 6.69 -39.22 -0.26 1.29 16 23 O -0.32 -3.60 10.50 -19.42 -0.20 -3.81 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 C -0.16 -1.93 9.99 -39.44 -0.39 -2.32 16 26 C -0.06 -0.75 9.69 -39.60 -0.38 -1.13 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.79 3.48 -51.93 -0.18 1.61 16 33 H 0.08 1.79 7.53 -51.93 -0.39 1.40 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.07 1.36 7.67 -51.93 -0.40 0.96 16 36 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 37 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 39 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.13 1.17 6.30 -52.49 -0.33 0.83 16 41 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 42 H 0.06 0.38 7.66 -51.92 -0.40 -0.02 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -32.94 377.12 -6.04 -38.98 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.70 Total: 2.50 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 0.06 Total: 5.89 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.53 Total: -34.02 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.34 Total: -35.15 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.26 Total: 16.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.94 -6.04 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.227 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds