Wall clock time and date at job start Tue Mar 31 2020 14:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99605 * 2 1 4 4 H 1.48504 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47388 * 299.99880 * 3 2 1 6 6 H 1.48495 * 109.47324 * 60.00139 * 3 2 1 7 7 C 1.37870 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46813 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46946 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00166 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99585 * 179.97438 * 13 12 11 16 16 C 1.46957 * 120.65462 * 359.81587 * 15 13 12 17 17 C 1.53197 * 108.89063 * 233.53473 * 16 15 13 18 18 C 1.53040 * 109.31110 * 305.44560 * 17 16 15 19 19 C 1.53044 * 109.53662 * 61.36306 * 18 17 16 20 20 H 1.09001 * 109.52587 * 58.60428 * 19 18 17 21 21 C 1.50706 * 109.49748 * 178.68317 * 19 18 17 22 22 N 1.30099 * 126.22935 * 59.85926 * 21 19 18 23 23 N 1.28658 * 109.49980 * 179.97438 * 22 21 19 24 24 C 1.30865 * 109.33914 * 0.02562 * 23 22 21 25 25 O 1.35419 * 126.35117 * 179.97438 * 24 23 22 26 26 O 1.34510 * 107.30161 * 359.77463 * 24 23 22 27 27 C 1.46926 * 120.62730 * 180.02562 * 15 13 12 28 28 H 0.96992 * 119.99987 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46941 * 59.99511 * 9 7 2 30 30 H 1.09002 * 109.46660 * 299.99801 * 9 7 2 31 31 H 1.09002 * 109.46947 * 59.99787 * 10 9 7 32 32 H 1.08999 * 109.46991 * 300.00066 * 10 9 7 33 33 H 1.08997 * 109.47213 * 59.99827 * 11 10 9 34 34 H 1.09002 * 109.46850 * 299.99834 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99514 * 12 11 10 36 36 H 1.08999 * 109.46626 * 299.99890 * 12 11 10 37 37 H 1.09001 * 109.46843 * 113.75468 * 16 15 13 38 38 H 1.08998 * 109.59977 * 353.39684 * 16 15 13 39 39 H 1.08995 * 109.50005 * 185.49506 * 17 16 15 40 40 H 1.08994 * 109.52103 * 65.41136 * 17 16 15 41 41 H 1.08994 * 109.45892 * 301.34445 * 18 17 16 42 42 H 1.09000 * 109.46209 * 181.38193 * 18 17 16 43 43 H 0.96700 * 113.99993 * 90.02143 * 25 24 23 44 44 H 1.09002 * 109.58861 * 6.60251 * 27 15 13 45 45 H 1.08996 * 109.58519 * 246.32142 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6621 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1500 0.0005 13 6 1.7213 -7.4551 0.0005 14 8 0.5085 -7.4551 0.0005 15 7 2.3953 -8.6223 0.0005 16 6 3.8647 -8.6390 -0.0035 17 6 4.3477 -9.5079 -1.1692 18 6 3.7036 -10.8925 -1.0690 19 6 2.1821 -10.7574 -1.1651 20 1 1.9177 -10.2798 -2.1086 21 6 1.5506 -12.1241 -1.0989 22 7 1.6548 -12.9726 -0.1182 23 7 0.9876 -14.0365 -0.3980 24 6 0.4316 -13.9023 -1.5750 25 8 -0.3459 -14.8152 -2.2042 26 8 0.7719 -12.6876 -2.0421 27 6 1.6747 -9.9027 0.0000 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8722 -3.6042 0.8905 32 1 2.8721 -3.6042 -0.8894 33 1 0.8541 -5.0446 -0.8903 34 1 0.8536 -5.0451 0.8897 35 1 3.1009 -6.0922 0.8909 36 1 3.1020 -6.0921 -0.8890 37 1 4.2259 -9.0555 0.9368 38 1 4.2416 -7.6233 -0.1243 39 1 5.4322 -9.6070 -1.1241 40 1 4.0638 -9.0420 -2.1127 41 1 3.9681 -11.3479 -0.1147 42 1 4.0645 -11.5207 -1.8834 43 1 -1.2891 -14.7303 -2.0085 44 1 0.6065 -9.7209 -0.1185 45 1 1.8546 -10.4236 0.9404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591831388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:31 Heat of formation + Delta-G solvation = -54.874595 kcal Electronic energy + Delta-G solvation = -26546.655643 eV Core-core repulsion = 22566.048509 eV Total energy + Delta-G solvation = -3980.607135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.75696 -40.48720 -38.69087 -37.92053 -36.78224 -34.96332 -34.10775 -32.63551 -32.30420 -30.22749 -29.39216 -26.42822 -25.49266 -24.74524 -24.18800 -22.84145 -22.36089 -21.01359 -20.18964 -20.02541 -19.07681 -18.23811 -17.40194 -17.14505 -16.26619 -16.13058 -16.05050 -15.60722 -15.51672 -14.95379 -14.58174 -14.42651 -14.31451 -13.70198 -13.42942 -13.29630 -13.11028 -12.99067 -12.61399 -12.45345 -12.24220 -12.10226 -11.81760 -11.62828 -11.54761 -11.45000 -11.38631 -11.21645 -11.00793 -10.56112 -10.49118 -10.41671 -10.05391 -9.84687 -9.62741 -9.23975 -8.98162 -8.96528 -8.31500 -5.96069 -3.98571 0.41431 1.14032 1.73537 2.56385 2.62722 3.00107 3.32482 3.39778 3.43485 3.71598 4.06423 4.17812 4.31600 4.43271 4.48008 4.58896 4.60757 4.63350 4.68413 4.91328 4.95430 5.10591 5.24184 5.27029 5.31654 5.36500 5.38314 5.39482 5.46154 5.49084 5.75888 5.81975 6.11212 6.13993 6.27669 6.28762 6.52694 6.82042 6.98985 7.14248 7.21002 7.68931 7.73603 7.89120 8.05265 8.09843 8.47053 9.09442 9.65213 11.15272 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.001855 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.408587 B =15093.387804 C =15688.455945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.517 3.483 14 O -0.532 6.532 15 N -0.619 5.619 16 C 0.102 3.898 17 C -0.134 4.134 18 C -0.111 4.111 19 C -0.006 4.006 20 H 0.109 0.891 21 C 0.189 3.811 22 N -0.265 5.265 23 N -0.266 5.266 24 C 0.332 3.668 25 O -0.403 6.403 26 O -0.235 6.235 27 C 0.122 3.878 28 H 0.259 0.741 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.421 0.579 44 H 0.098 0.902 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 -29.056 -3.745 30.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.176 4.176 13 C 0.307 3.693 14 O -0.407 6.407 15 N -0.354 5.354 16 C -0.021 4.021 17 C -0.172 4.172 18 C -0.150 4.150 19 C -0.027 4.027 20 H 0.127 0.873 21 C -0.022 4.022 22 N -0.113 5.113 23 N -0.127 5.127 24 C 0.083 3.917 25 O -0.209 6.209 26 O -0.116 6.116 27 C -0.002 4.002 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.282 0.718 44 H 0.117 0.883 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.778 -29.685 -2.939 30.590 hybrid contribution -0.570 1.204 -1.238 1.818 sum 6.208 -28.480 -4.176 29.447 Atomic orbital electron populations 1.69985 1.06045 1.26400 1.51025 1.25049 0.94847 0.99260 0.95487 0.86555 0.80071 0.83926 0.77541 1.19777 1.21071 1.21060 1.21320 0.93020 0.91180 1.50258 0.92684 1.19104 0.94076 0.91301 0.97321 1.21647 0.99074 0.93955 1.00081 1.21477 0.97040 0.92720 1.02991 1.21834 1.00141 0.91701 1.03965 1.21191 0.88220 0.85282 0.74605 1.90707 1.14207 1.87107 1.48657 1.48162 1.06924 1.05200 1.75161 1.21866 0.79223 1.02098 0.98872 1.21943 1.01166 0.94545 0.99536 1.21626 0.90758 0.98418 1.04155 1.20245 0.95837 0.83532 1.03056 0.87308 1.27503 0.93387 0.98323 0.82951 1.74456 1.17057 0.97206 1.22622 1.74968 1.11011 1.17656 1.09099 1.24422 0.97964 0.81099 0.88181 1.85011 1.23648 1.43345 1.68919 1.84896 1.53460 1.27870 1.45409 1.21424 0.98608 0.83634 0.96511 0.93102 0.96611 0.96574 0.93428 0.93472 0.91813 0.91765 0.88938 0.88983 0.90705 0.88537 0.89393 0.90751 0.89769 0.90861 0.71819 0.88350 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.14 -1.68 4.05 -27.88 -0.11 -1.80 16 13 C 0.52 6.76 7.70 -10.98 -0.08 6.67 16 14 O -0.53 -9.21 15.39 5.56 0.09 -9.12 16 15 N -0.62 -5.81 2.98 -172.77 -0.51 -6.32 16 16 C 0.10 0.61 6.34 -3.69 -0.02 0.58 16 17 C -0.13 -0.61 6.08 -26.61 -0.16 -0.77 16 18 C -0.11 -0.60 5.15 -26.69 -0.14 -0.74 16 19 C -0.01 -0.04 2.81 -91.67 -0.26 -0.30 16 20 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 21 C 0.19 1.71 6.99 -13.01 -0.09 1.61 16 22 N -0.26 -2.81 12.21 32.58 0.40 -2.42 16 23 N -0.27 -2.89 12.25 29.24 0.36 -2.53 16 24 C 0.33 2.92 9.79 52.35 0.51 3.44 16 25 O -0.40 -2.22 13.63 -41.04 -0.56 -2.78 16 26 O -0.23 -2.17 10.89 -18.95 -0.21 -2.38 16 27 C 0.12 1.09 5.69 -3.73 -0.02 1.07 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.18 8.10 -51.93 -0.42 0.75 16 34 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 36 H 0.09 0.94 7.68 -51.93 -0.40 0.55 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.51 5.94 -51.93 -0.31 0.20 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.42 -0.15 9.06 45.56 0.41 0.27 16 44 H 0.10 1.07 7.01 -51.93 -0.36 0.71 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -36.86 374.75 -6.37 -43.23 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -6.10 Total: -5.63 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -1.19 Total: -7.77 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.98 Total: -37.91 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.68 Total: -14.28 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.86 -6.37 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591831388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.647 kcal (2) G-P(sol) polarization free energy of solvation -36.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds