Wall clock time and date at job start Tue Mar 31 2020 14:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99605 * 2 1 4 4 H 1.48504 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47388 * 299.99880 * 3 2 1 6 6 H 1.48495 * 109.47324 * 60.00139 * 3 2 1 7 7 C 1.37870 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46813 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46946 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00166 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99585 * 179.97438 * 13 12 11 16 16 C 1.46957 * 120.65462 * 359.81587 * 15 13 12 17 17 C 1.53197 * 108.89063 * 233.53473 * 16 15 13 18 18 C 1.53040 * 109.31110 * 305.44560 * 17 16 15 19 19 C 1.53044 * 109.53662 * 61.36306 * 18 17 16 20 20 H 1.09001 * 109.52587 * 58.60428 * 19 18 17 21 21 C 1.50706 * 109.49748 * 178.68317 * 19 18 17 22 22 N 1.30099 * 126.22935 * 59.85926 * 21 19 18 23 23 N 1.28658 * 109.49980 * 179.97438 * 22 21 19 24 24 C 1.30865 * 109.33914 * 0.02562 * 23 22 21 25 25 O 1.35419 * 126.35117 * 179.97438 * 24 23 22 26 26 O 1.34510 * 107.30161 * 359.77463 * 24 23 22 27 27 C 1.46926 * 120.62730 * 180.02562 * 15 13 12 28 28 H 0.96992 * 119.99987 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46941 * 59.99511 * 9 7 2 30 30 H 1.09002 * 109.46660 * 299.99801 * 9 7 2 31 31 H 1.09002 * 109.46947 * 59.99787 * 10 9 7 32 32 H 1.08999 * 109.46991 * 300.00066 * 10 9 7 33 33 H 1.08997 * 109.47213 * 59.99827 * 11 10 9 34 34 H 1.09002 * 109.46850 * 299.99834 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99514 * 12 11 10 36 36 H 1.08999 * 109.46626 * 299.99890 * 12 11 10 37 37 H 1.09001 * 109.46843 * 113.75468 * 16 15 13 38 38 H 1.08998 * 109.59977 * 353.39684 * 16 15 13 39 39 H 1.08995 * 109.50005 * 185.49506 * 17 16 15 40 40 H 1.08994 * 109.52103 * 65.41136 * 17 16 15 41 41 H 1.08994 * 109.45892 * 301.34445 * 18 17 16 42 42 H 1.09000 * 109.46209 * 181.38193 * 18 17 16 43 43 H 0.96700 * 113.99993 * 90.02143 * 25 24 23 44 44 H 1.09002 * 109.58861 * 6.60251 * 27 15 13 45 45 H 1.08996 * 109.58519 * 246.32142 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6621 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1500 0.0005 13 6 1.7213 -7.4551 0.0005 14 8 0.5085 -7.4551 0.0005 15 7 2.3953 -8.6223 0.0005 16 6 3.8647 -8.6390 -0.0035 17 6 4.3477 -9.5079 -1.1692 18 6 3.7036 -10.8925 -1.0690 19 6 2.1821 -10.7574 -1.1651 20 1 1.9177 -10.2798 -2.1086 21 6 1.5506 -12.1241 -1.0989 22 7 1.6548 -12.9726 -0.1182 23 7 0.9876 -14.0365 -0.3980 24 6 0.4316 -13.9023 -1.5750 25 8 -0.3459 -14.8152 -2.2042 26 8 0.7719 -12.6876 -2.0421 27 6 1.6747 -9.9027 0.0000 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8722 -3.6042 0.8905 32 1 2.8721 -3.6042 -0.8894 33 1 0.8541 -5.0446 -0.8903 34 1 0.8536 -5.0451 0.8897 35 1 3.1009 -6.0922 0.8909 36 1 3.1020 -6.0921 -0.8890 37 1 4.2259 -9.0555 0.9368 38 1 4.2416 -7.6233 -0.1243 39 1 5.4322 -9.6070 -1.1241 40 1 4.0638 -9.0420 -2.1127 41 1 3.9681 -11.3479 -0.1147 42 1 4.0645 -11.5207 -1.8834 43 1 -1.2891 -14.7303 -2.0085 44 1 0.6065 -9.7209 -0.1185 45 1 1.8546 -10.4236 0.9404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591831388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:30 Heat of formation + Delta-G solvation = -86.037173 kcal Electronic energy + Delta-G solvation = -26548.006954 eV Core-core repulsion = 22566.048509 eV Total energy + Delta-G solvation = -3981.958445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.45444 -41.33193 -39.23797 -38.68863 -37.49925 -36.61215 -34.94289 -34.48513 -32.89220 -31.60377 -30.37929 -27.83054 -26.27838 -25.82224 -24.86614 -23.90849 -23.41178 -21.93374 -21.53289 -20.74681 -19.84918 -18.92265 -18.43142 -18.19811 -17.87783 -17.02217 -16.94057 -16.47426 -16.38806 -16.16794 -15.67529 -15.36943 -15.15060 -14.58545 -14.48495 -14.29734 -13.96540 -13.75123 -13.66758 -13.59736 -13.51576 -13.22097 -13.17081 -12.83684 -12.67771 -12.31280 -12.19242 -12.12303 -12.07155 -12.04372 -11.92160 -11.73413 -11.34513 -11.29424 -11.09970 -10.80331 -10.66766 -10.54179 -9.73495 -8.17317 -6.29221 -0.22229 0.51874 1.02465 1.41847 1.42606 1.56057 1.61081 1.86710 2.36534 2.43272 3.09076 3.15611 3.44921 3.57956 3.72559 3.79549 3.93376 4.03285 4.05744 4.10927 4.16146 4.17942 4.27802 4.45951 4.58946 4.69432 4.69706 4.74119 4.74698 4.87960 4.88910 4.92767 5.07266 5.10172 5.22000 5.35959 5.38351 5.40640 5.49426 5.59903 5.81100 5.90620 6.00558 6.27134 6.33258 6.89972 6.98511 7.15072 7.40503 8.95096 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.001855 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.408587 B =15093.387804 C =15688.455945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.514 3.486 14 O -0.588 6.588 15 N -0.608 5.608 16 C 0.092 3.908 17 C -0.126 4.126 18 C -0.108 4.108 19 C 0.002 3.998 20 H 0.112 0.888 21 C 0.191 3.809 22 N -0.284 5.284 23 N -0.298 5.298 24 C 0.345 3.655 25 O -0.400 6.400 26 O -0.241 6.241 27 C 0.124 3.876 28 H 0.262 0.738 29 H -0.016 1.016 30 H -0.017 1.017 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.040 0.960 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.446 0.554 44 H 0.072 0.928 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.068 -29.457 -4.274 31.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.132 4.132 11 C -0.135 4.135 12 C -0.165 4.165 13 C 0.304 3.696 14 O -0.468 6.468 15 N -0.341 5.341 16 C -0.029 4.029 17 C -0.164 4.164 18 C -0.146 4.146 19 C -0.019 4.019 20 H 0.130 0.870 21 C -0.020 4.020 22 N -0.132 5.132 23 N -0.159 5.159 24 C 0.095 3.905 25 O -0.211 6.211 26 O -0.124 6.124 27 C 0.000 4.000 28 H 0.071 0.929 29 H 0.002 0.998 30 H 0.002 0.998 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.312 0.688 44 H 0.090 0.910 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.051 -30.137 -3.459 31.956 hybrid contribution -1.662 1.232 -1.093 2.340 sum 8.389 -28.905 -4.552 30.440 Atomic orbital electron populations 1.70142 1.08080 1.27626 1.52091 1.26105 0.95785 1.03781 0.94909 0.85333 0.79280 0.78435 0.77582 1.17934 1.20579 1.20626 1.21801 0.93817 0.92167 1.49876 0.91403 1.19077 0.94762 0.93924 0.94250 1.21442 0.97760 0.92551 1.01478 1.21263 0.97551 0.93777 1.00914 1.21717 0.98919 0.89006 1.06812 1.21310 0.87551 0.86501 0.74209 1.90694 1.16568 1.87912 1.51610 1.48168 1.08539 1.04158 1.73280 1.22249 0.76545 1.03618 1.00473 1.21937 1.02488 0.93250 0.98742 1.21653 0.88939 0.99413 1.04559 1.20268 0.97145 0.82293 1.02201 0.86976 1.27800 0.93002 0.98616 0.82606 1.74384 1.17798 0.97616 1.23353 1.74902 1.12364 1.18253 1.10356 1.24525 0.97378 0.80975 0.87618 1.84985 1.25419 1.42244 1.68460 1.84910 1.53650 1.28179 1.45638 1.21359 0.97334 0.83757 0.97579 0.92928 0.99771 0.99835 0.91940 0.91826 0.93941 0.94106 0.86126 0.85856 0.89101 0.87073 0.86807 0.90762 0.89743 0.89989 0.68828 0.90981 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 13.29 21.45 0.28 -58.58 16 2 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.09 -3.73 5.15 30.59 0.16 -3.57 16 11 C -0.10 -3.36 4.50 30.60 0.14 -3.22 16 12 C -0.13 -2.81 4.05 29.85 0.12 -2.69 16 13 C 0.51 13.10 7.70 87.66 0.67 13.77 16 14 O -0.59 -21.22 15.39 -3.02 -0.05 -21.27 16 15 N -0.61 -10.47 2.98 -818.90 -2.44 -12.91 16 16 C 0.09 0.77 6.34 86.36 0.55 1.32 16 17 C -0.13 -0.69 6.08 30.67 0.19 -0.50 16 18 C -0.11 -0.90 5.15 30.62 0.16 -0.74 16 19 C 0.00 0.03 2.81 -11.47 -0.03 -0.01 16 20 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 21 C 0.19 3.36 6.99 88.37 0.62 3.98 16 22 N -0.28 -5.97 12.21 -165.32 -2.02 -7.99 16 23 N -0.30 -6.43 12.25 -289.31 -3.54 -9.97 16 24 C 0.34 5.86 9.79 130.39 1.28 7.13 16 25 O -0.40 -3.92 13.63 -65.06 -0.89 -4.80 16 26 O -0.24 -4.36 10.89 13.99 0.15 -4.21 16 27 C 0.12 2.18 5.69 86.35 0.49 2.67 16 28 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 29 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 30 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 34 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 35 H 0.12 2.08 7.95 -2.39 -0.02 2.06 16 36 H 0.12 2.04 7.68 -2.39 -0.02 2.02 16 37 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.11 0.66 5.94 -2.39 -0.01 0.64 16 39 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.45 -0.97 9.06 -74.06 -0.67 -1.64 16 44 H 0.07 1.67 7.01 -2.39 -0.02 1.65 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -83.81 374.75 -0.96 -84.77 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 0.34 Total: -0.03 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.18 Total: -11.45 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -7.72 Total: -89.45 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.78 Total: -30.28 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -83.81 -0.96 -84.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591831388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.270 kcal (2) G-P(sol) polarization free energy of solvation -83.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds