Wall clock time and date at job start Tue Mar 31 2020 14:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99685 * 2 1 4 4 H 1.48497 * 109.47052 * 239.99831 * 3 2 1 5 5 H 1.48501 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46841 * 119.99982 * 3 2 1 7 7 C 1.37871 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46875 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47013 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47150 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00130 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99750 * 179.97438 * 13 12 11 16 16 C 1.46919 * 120.63395 * 0.02562 * 15 13 12 17 17 C 1.53195 * 108.89273 * 126.29715 * 16 15 13 18 18 C 1.53346 * 109.14901 * 54.57640 * 17 16 15 19 19 C 1.53034 * 109.61010 * 298.71225 * 18 17 16 20 20 H 1.08994 * 109.50232 * 301.42239 * 19 18 17 21 21 C 1.50700 * 109.52573 * 181.34079 * 19 18 17 22 22 N 1.30101 * 126.23535 * 299.83370 * 21 19 18 23 23 N 1.28657 * 109.50955 * 179.88772 * 22 21 19 24 24 C 1.30867 * 109.33189 * 0.38357 * 23 22 21 25 25 O 1.35417 * 126.34558 * 179.80835 * 24 23 22 26 26 O 1.34502 * 107.30509 * 359.77015 * 24 23 22 27 27 C 1.46933 * 120.62602 * 179.97438 * 15 13 12 28 28 H 0.96995 * 119.99903 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46976 * 60.00052 * 9 7 2 30 30 H 1.09000 * 109.46845 * 299.99794 * 9 7 2 31 31 H 1.09000 * 109.46765 * 60.00463 * 10 9 7 32 32 H 1.08992 * 109.47077 * 299.99887 * 10 9 7 33 33 H 1.09003 * 109.46787 * 59.99967 * 11 10 9 34 34 H 1.09001 * 109.47108 * 300.00471 * 11 10 9 35 35 H 1.09003 * 109.47495 * 60.00249 * 12 11 10 36 36 H 1.09001 * 109.47444 * 300.00113 * 12 11 10 37 37 H 1.09002 * 109.58751 * 246.15665 * 16 15 13 38 38 H 1.08996 * 109.58750 * 6.43850 * 16 15 13 39 39 H 1.08997 * 109.49914 * 174.65962 * 17 16 15 40 40 H 1.09002 * 109.49585 * 294.75599 * 17 16 15 41 41 H 1.08999 * 109.41979 * 178.67448 * 18 17 16 42 42 H 1.09001 * 109.42242 * 58.75065 * 18 17 16 43 43 H 0.96695 * 114.00264 * 359.95353 * 25 24 23 44 44 H 1.08994 * 109.58580 * 353.42544 * 27 15 13 45 45 H 1.09006 * 109.57831 * 113.70037 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 6 1.7213 -7.4551 0.0018 14 8 0.5085 -7.4551 0.0018 15 7 2.3953 -8.6222 0.0018 16 6 3.8644 -8.6384 0.0024 17 6 4.3505 -9.5020 1.1706 18 6 3.7038 -10.8891 1.0739 19 6 2.1824 -10.7542 1.1697 20 1 1.9183 -10.2739 2.1118 21 6 1.5506 -12.1210 1.1076 22 7 1.6500 -12.9702 0.1270 23 7 0.9866 -14.0351 0.4120 24 6 0.4309 -13.8974 1.5888 25 8 -0.3464 -14.8084 2.2209 26 8 0.7755 -12.6835 2.0544 27 6 1.6747 -9.9027 0.0024 28 1 -0.4850 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8721 -3.6042 0.8906 32 1 2.8721 -3.6043 -0.8894 33 1 0.8535 -5.0451 -0.8886 34 1 0.8541 -5.0446 0.8914 35 1 3.1014 -6.0918 0.8918 36 1 3.1015 -6.0927 -0.8881 37 1 4.2256 -9.0573 -0.9369 38 1 4.2409 -7.6221 0.1179 39 1 5.4352 -9.5987 1.1248 40 1 4.0660 -9.0333 2.1126 41 1 4.0649 -11.5150 1.8899 42 1 3.9684 -11.3467 0.1207 43 1 -0.4802 -15.6255 1.7214 44 1 0.6065 -9.7208 0.1203 45 1 1.8549 -10.4237 -0.9380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591831389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:33 Heat of formation + Delta-G solvation = -84.902791 kcal Electronic energy + Delta-G solvation = -26543.295904 eV Core-core repulsion = 22561.386649 eV Total energy + Delta-G solvation = -3981.909255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.43319 -41.32482 -39.38641 -38.70921 -37.46539 -36.61051 -34.92625 -34.47498 -32.86080 -31.59315 -30.32926 -27.82035 -26.25945 -25.80294 -25.01534 -23.89385 -23.38957 -21.96460 -21.56705 -20.38191 -19.83621 -18.88456 -18.45461 -18.39971 -18.07486 -17.03962 -16.90799 -16.55154 -16.41009 -15.85223 -15.40769 -15.32030 -15.11173 -14.89365 -14.51766 -14.39612 -14.26530 -13.75544 -13.70299 -13.59350 -13.51161 -13.23030 -13.14674 -12.77906 -12.73082 -12.36676 -12.18968 -12.12641 -12.08500 -12.00597 -11.91233 -11.71687 -11.34074 -11.29445 -11.11752 -10.75584 -10.52350 -10.34143 -9.71525 -8.16562 -6.28781 0.00542 0.26653 1.13272 1.41886 1.45950 1.53709 1.61229 1.87058 2.42712 2.44283 3.13158 3.16048 3.46260 3.48344 3.74247 3.80929 3.86359 4.04027 4.06087 4.07339 4.16749 4.17913 4.30150 4.48164 4.60043 4.69873 4.70211 4.74980 4.75615 4.88011 4.88985 4.94651 5.08619 5.11127 5.21930 5.36152 5.39452 5.40524 5.50203 5.59688 5.81163 5.90647 5.94658 6.27305 6.34013 6.89920 7.05864 7.15584 7.40826 8.95404 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.001853 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.195123 B =15110.092326 C =15698.041028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.513 3.487 14 O -0.589 6.589 15 N -0.608 5.608 16 C 0.092 3.908 17 C -0.126 4.126 18 C -0.106 4.106 19 C 0.006 3.994 20 H 0.109 0.891 21 C 0.171 3.829 22 N -0.272 5.272 23 N -0.346 5.346 24 C 0.374 3.626 25 O -0.404 6.404 26 O -0.227 6.227 27 C 0.123 3.877 28 H 0.262 0.738 29 H -0.017 1.017 30 H -0.016 1.016 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.463 0.537 44 H 0.069 0.931 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.671 -31.536 3.888 33.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.132 4.132 11 C -0.135 4.135 12 C -0.164 4.164 13 C 0.303 3.697 14 O -0.469 6.469 15 N -0.341 5.341 16 C -0.029 4.029 17 C -0.164 4.164 18 C -0.144 4.144 19 C -0.015 4.015 20 H 0.127 0.873 21 C -0.043 4.043 22 N -0.118 5.118 23 N -0.212 5.212 24 C 0.125 3.875 25 O -0.209 6.209 26 O -0.110 6.110 27 C -0.001 4.001 28 H 0.071 0.929 29 H 0.001 0.999 30 H 0.002 0.998 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.328 0.672 44 H 0.087 0.913 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.088 -31.659 3.313 33.708 hybrid contribution -1.241 0.703 0.882 1.677 sum 9.847 -30.956 4.195 32.754 Atomic orbital electron populations 1.70134 1.08094 1.27754 1.51923 1.26110 0.95782 1.03786 0.94858 0.85432 0.78144 0.77675 0.79370 1.18883 1.21253 1.18839 1.21741 0.93811 0.92169 1.50167 0.91385 1.19069 0.94756 0.93929 0.94220 1.21441 0.97758 0.92517 1.01488 1.21265 0.97561 0.93819 1.00886 1.21713 0.98901 0.88963 1.06824 1.21332 0.87555 0.86546 0.74229 1.90697 1.16624 1.87928 1.51634 1.48168 1.08560 1.04155 1.73257 1.22241 0.76510 1.03663 1.00513 1.22001 1.02460 0.93308 0.98650 1.21689 0.88806 0.99330 1.04561 1.20193 0.97115 0.82273 1.01923 0.87273 1.27777 0.94144 0.99387 0.82943 1.74101 1.17045 0.97659 1.22969 1.75012 1.15724 1.19121 1.11388 1.24226 0.92940 0.83258 0.87027 1.84763 1.61821 1.29042 1.45256 1.84763 1.54817 1.26338 1.45127 1.21379 0.97230 0.83787 0.97676 0.92928 0.99873 0.99808 0.91812 0.91906 0.94124 0.94000 0.85843 0.86086 0.89063 0.87116 0.86712 0.90856 0.89906 0.89719 0.67150 0.91262 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.15 13.29 21.45 0.28 -58.87 16 2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.09 -3.76 5.15 30.60 0.16 -3.60 16 11 C -0.10 -3.43 4.50 30.59 0.14 -3.29 16 12 C -0.12 -2.87 4.05 29.85 0.12 -2.75 16 13 C 0.51 13.49 7.70 87.66 0.67 14.16 16 14 O -0.59 -21.87 15.40 -3.03 -0.05 -21.92 16 15 N -0.61 -10.92 2.97 -818.98 -2.44 -13.35 16 16 C 0.09 0.81 6.33 86.36 0.55 1.35 16 17 C -0.13 -0.72 6.11 30.78 0.19 -0.53 16 18 C -0.11 -0.91 5.15 30.72 0.16 -0.75 16 19 C 0.01 0.09 2.81 -11.48 -0.03 0.05 16 20 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 21 C 0.17 3.13 6.99 88.37 0.62 3.74 16 22 N -0.27 -5.68 12.21 -165.32 -2.02 -7.70 16 23 N -0.35 -6.85 12.25 -289.31 -3.54 -10.40 16 24 C 0.37 6.28 9.79 130.39 1.28 7.55 16 25 O -0.40 -3.68 13.63 -65.04 -0.89 -4.57 16 26 O -0.23 -4.46 10.89 13.99 0.15 -4.30 16 27 C 0.12 2.29 5.70 86.35 0.49 2.79 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 29 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 34 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 35 H 0.12 2.11 7.70 -2.39 -0.02 2.09 16 36 H 0.12 2.14 7.94 -2.39 -0.02 2.12 16 37 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.11 0.70 5.93 -2.39 -0.01 0.68 16 39 H 0.11 0.14 8.14 -2.39 -0.02 0.13 16 40 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.46 -1.12 9.06 -74.06 -0.67 -1.80 16 44 H 0.07 1.71 7.00 -2.39 -0.02 1.70 16 45 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -84.17 374.77 -0.95 -85.12 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 0.34 Total: 0.50 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.18 Total: -11.10 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -7.71 Total: -90.32 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.78 Total: -30.79 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -84.17 -0.95 -85.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591831389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.221 kcal (2) G-P(sol) polarization free energy of solvation -84.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds