Wall clock time and date at job start Tue Mar 31 2020 14:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35995 * 117.00016 * 2 1 4 4 C 1.38668 * 120.04362 * 359.97438 * 3 2 1 5 5 C 1.38226 * 120.08956 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.90998 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47529 * 89.99787 * 6 5 4 8 8 C 1.48525 * 110.99862 * 287.39524 * 7 6 5 9 9 C 1.55103 * 103.28607 * 200.33027 * 8 7 6 10 10 C 1.54590 * 102.84508 * 37.30463 * 9 8 7 11 11 O 1.42902 * 110.30641 * 97.11737 * 10 9 8 12 12 C 1.50695 * 110.30982 * 219.18631 * 10 9 8 13 13 H 1.08005 * 119.99630 * 121.40252 * 12 10 9 14 14 C 1.37876 * 120.00248 * 301.67617 * 12 10 9 15 15 N 1.31513 * 119.99699 * 353.95120 * 14 12 10 16 16 Si 1.86796 * 120.00378 * 173.95274 * 14 12 10 17 17 H 1.48501 * 109.47455 * 94.97284 * 16 14 12 18 18 H 1.48496 * 109.47238 * 214.98228 * 16 14 12 19 19 H 1.48502 * 109.46833 * 334.97760 * 16 14 12 20 20 C 1.47901 * 111.00157 * 170.00018 * 7 6 5 21 21 C 1.38226 * 120.17839 * 0.28958 * 5 4 3 22 22 C 1.38670 * 120.08739 * 359.45763 * 21 5 4 23 23 O 1.36004 * 120.04339 * 180.26839 * 22 21 5 24 24 C 1.42895 * 116.99832 * 0.25346 * 23 22 21 25 25 C 1.38970 * 120.04660 * 179.97438 * 3 2 1 26 26 O 1.36094 * 120.09087 * 0.04519 * 25 3 2 27 27 H 1.09001 * 109.46705 * 60.00458 * 1 2 3 28 28 H 1.09007 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47215 * 300.00110 * 1 2 3 30 30 H 1.08004 * 119.95681 * 359.97438 * 4 3 2 31 31 H 1.08997 * 109.47586 * 329.99561 * 6 5 4 32 32 H 1.09004 * 109.47273 * 209.99297 * 6 5 4 33 33 H 1.09002 * 110.67056 * 318.71592 * 8 7 6 34 34 H 1.09007 * 110.66963 * 81.67762 * 8 7 6 35 35 H 1.09001 * 110.70709 * 278.99354 * 9 8 7 36 36 H 1.09002 * 110.81368 * 155.66719 * 9 8 7 37 37 H 0.96699 * 113.99975 * 56.48734 * 11 10 9 38 38 H 0.97003 * 120.00240 * 180.02562 * 15 14 12 39 39 H 1.08993 * 109.92014 * 26.48799 * 20 7 6 40 40 H 1.09007 * 110.07523 * 265.28731 * 20 7 6 41 41 H 1.07998 * 119.95465 * 179.73034 * 21 5 4 42 42 H 1.09007 * 109.46953 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47732 * 299.99512 * 24 23 22 44 44 H 1.09000 * 109.47430 * 60.00063 * 24 23 22 45 45 H 0.96697 * 114.00323 * 89.99595 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2921 2.3753 -0.0005 5 6 1.9187 3.6074 0.0000 6 6 1.0949 4.8693 0.0000 7 7 0.8267 5.2790 1.3850 8 6 -0.1650 4.3769 2.0243 9 6 -0.7063 5.2227 3.2064 10 6 -0.7573 6.6493 2.6131 11 8 -2.0767 6.9479 2.1524 12 6 -0.3226 7.6600 3.6429 13 1 0.5199 8.3057 3.4437 14 6 -0.9969 7.7565 4.8417 15 7 -2.0897 7.0522 5.0399 16 14 -0.3583 8.8875 6.1842 17 1 -1.0484 10.1995 6.0960 18 1 -0.6220 8.2776 7.5122 19 1 1.1034 9.0846 6.0115 20 6 0.2300 6.6316 1.4315 21 6 3.2987 3.6851 -0.0050 22 6 4.0603 2.5263 0.0008 23 8 5.4182 2.6039 0.0015 24 6 5.9932 3.9120 0.0016 25 6 3.4342 1.2856 0.0005 26 8 4.1782 0.1460 0.0001 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2136 2.3188 -0.0014 31 1 0.1513 4.6873 -0.5143 32 1 1.6418 5.6602 -0.5133 33 1 -0.9676 4.1325 1.3285 34 1 0.3180 3.4692 2.3865 35 1 -0.0226 5.1818 4.0544 36 1 -1.7027 4.8897 3.4966 37 1 -2.7600 6.8578 2.8307 38 1 -2.5644 7.1204 5.8831 39 1 -0.3002 6.8357 0.5013 40 1 1.0084 7.3787 1.5867 41 1 3.7845 4.6497 -0.0089 42 1 7.0802 3.8311 0.0025 43 1 5.6695 4.4513 -0.8886 44 1 5.6686 4.4516 0.8913 45 1 4.3935 -0.1829 -0.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:20 Heat of formation + Delta-G solvation = -128.497299 kcal Electronic energy + Delta-G solvation = -28193.035734 eV Core-core repulsion = 24176.943329 eV Total energy + Delta-G solvation = -4016.092406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79091 -39.05122 -38.56003 -37.14812 -36.55277 -34.55522 -32.13854 -31.24284 -29.69754 -29.07354 -28.10709 -27.84930 -26.94193 -25.17349 -23.87785 -22.04852 -21.63359 -20.36068 -19.44670 -18.74448 -17.64887 -17.10584 -17.02429 -16.53194 -16.22391 -15.59072 -15.32825 -15.18812 -15.00584 -14.77772 -14.44988 -14.04949 -13.91332 -13.63736 -13.46907 -12.84018 -12.51704 -12.33349 -12.19889 -12.07942 -11.78938 -11.61994 -11.61447 -11.43055 -11.18897 -10.97913 -10.83172 -10.67527 -10.64366 -10.52279 -10.42779 -10.29825 -9.92999 -9.20116 -8.55877 -8.27178 -8.18231 -8.09640 -7.83321 -6.19953 -4.24650 1.18791 1.35382 2.74931 3.23912 3.31582 3.36086 3.52761 3.55818 4.16072 4.33099 4.58460 4.77731 4.86013 5.01508 5.03268 5.06009 5.08596 5.09477 5.13243 5.19712 5.38656 5.41498 5.52473 5.61855 5.67642 5.76566 5.97993 6.00030 6.07657 6.12769 6.20632 6.34655 6.37496 6.45934 6.58136 6.88614 7.00197 7.11037 7.17778 7.25915 7.48078 7.59414 7.65529 7.78134 7.82468 8.18388 8.76488 9.38777 9.49759 10.88368 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.003367 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.216717 B = 8313.531489 C = 9226.119062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.140 3.860 4 C -0.222 4.222 5 C 0.009 3.991 6 C 0.080 3.920 7 N -0.506 5.506 8 C 0.032 3.968 9 C -0.117 4.117 10 C 0.243 3.757 11 O -0.594 6.594 12 C -0.528 4.528 13 H 0.061 0.939 14 C 0.070 3.930 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.055 3.945 21 C -0.210 4.210 22 C 0.139 3.861 23 O -0.307 6.307 24 C 0.025 3.975 25 C 0.031 3.969 26 O -0.474 6.474 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.380 0.620 38 H 0.266 0.734 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.136 0.864 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 -10.751 -12.484 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.094 3.906 4 C -0.242 4.242 5 C 0.008 3.992 6 C -0.048 4.048 7 N -0.231 5.231 8 C -0.095 4.095 9 C -0.155 4.155 10 C 0.203 3.797 11 O -0.403 6.403 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.132 4.132 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.072 4.072 21 C -0.229 4.229 22 C 0.093 3.907 23 O -0.220 6.220 24 C -0.070 4.070 25 C -0.016 4.016 26 O -0.281 6.281 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.153 0.847 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.265 -10.971 -12.024 18.729 hybrid contribution -1.030 0.840 0.444 1.401 sum 8.235 -10.131 -11.580 17.451 Atomic orbital electron populations 1.23121 0.78125 1.03945 1.01799 1.86103 1.21417 1.26026 1.88415 1.18911 0.90653 0.84842 0.96224 1.20983 1.00169 0.91159 1.11839 1.19389 0.92926 0.94128 0.92751 1.21246 0.97706 0.93818 0.92034 1.64812 1.41933 1.03234 1.13082 1.23374 0.92541 0.96371 0.97256 1.23001 1.00265 0.96491 0.95791 1.19375 0.80197 0.91334 0.88768 1.86115 1.18685 1.92719 1.42802 1.21649 1.15055 1.19750 1.00171 0.92070 1.24986 0.94489 0.95387 0.98334 1.69696 1.16797 1.41432 1.25761 0.86483 0.79444 0.80546 0.80976 1.20678 1.21078 1.19696 1.22867 0.96776 0.89240 0.98353 1.20936 0.93927 0.97214 1.10828 1.18943 0.82858 0.92713 0.96174 1.86101 1.16728 1.30767 1.88404 1.23120 0.98977 0.83005 1.01897 1.16635 0.86109 0.84467 1.14371 1.84976 1.71667 1.38961 1.32526 0.92580 0.88147 0.92182 0.85037 0.93764 0.90075 0.95000 0.91684 0.91332 0.91653 0.76960 0.92461 0.94550 0.90170 0.84663 0.88242 0.92545 0.92039 0.77022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.02 10.28 -34.31 -0.35 -4.37 16 3 C 0.14 1.98 6.70 -39.15 -0.26 1.72 16 4 C -0.22 -3.07 7.81 -39.43 -0.31 -3.38 16 5 C 0.01 0.13 5.16 -104.63 -0.54 -0.41 16 6 C 0.08 1.22 4.86 -4.98 -0.02 1.20 16 7 N -0.51 -9.56 5.24 -231.78 -1.21 -10.77 16 8 C 0.03 0.62 5.68 -1.81 -0.01 0.61 16 9 C -0.12 -2.68 5.29 -24.78 -0.13 -2.81 16 10 C 0.24 5.96 0.98 -90.42 -0.09 5.87 16 11 O -0.59 -15.19 12.94 -35.23 -0.46 -15.65 16 12 C -0.53 -14.15 8.12 -34.44 -0.28 -14.43 16 13 H 0.06 1.64 7.36 -52.48 -0.39 1.25 16 14 C 0.07 1.85 5.23 -17.82 -0.09 1.76 16 15 N -0.90 -23.90 10.98 55.43 0.61 -23.29 16 16 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 C 0.05 1.16 6.13 -2.75 -0.02 1.15 16 21 C -0.21 -2.88 8.68 -39.43 -0.34 -3.22 16 22 C 0.14 1.96 6.70 -39.15 -0.26 1.70 16 23 O -0.31 -3.98 10.28 -34.34 -0.35 -4.33 16 24 C 0.03 0.23 9.81 101.05 0.99 1.22 16 25 C 0.03 0.44 6.73 -39.04 -0.26 0.18 16 26 O -0.47 -6.48 13.07 -45.30 -0.59 -7.07 16 27 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 30 H 0.13 1.67 6.29 -52.48 -0.33 1.33 16 31 H 0.04 0.66 7.77 -51.93 -0.40 0.26 16 32 H 0.08 1.12 8.02 -51.93 -0.42 0.71 16 33 H 0.03 0.59 7.81 -51.93 -0.41 0.18 16 34 H 0.06 1.20 7.84 -51.92 -0.41 0.80 16 35 H 0.07 1.70 7.85 -51.93 -0.41 1.29 16 36 H 0.06 1.55 7.90 -51.93 -0.41 1.14 16 37 H 0.38 9.82 7.35 45.56 0.34 10.16 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 39 H 0.04 0.75 7.59 -51.93 -0.39 0.36 16 40 H 0.08 1.71 7.39 -51.93 -0.38 1.33 16 41 H 0.14 1.65 6.29 -52.49 -0.33 1.32 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 44 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 45 H 0.38 3.36 9.07 45.56 0.41 3.77 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -31.03 365.11 -7.62 -38.64 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.10 Total: 13.22 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.64 Total: -7.63 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: -0.61 Total: -34.07 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.75 Total: -31.42 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.03 -7.62 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.856 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds