Wall clock time and date at job start Tue Mar 31 2020 14:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35995 * 117.00016 * 2 1 4 4 C 1.38668 * 120.04362 * 359.97438 * 3 2 1 5 5 C 1.38226 * 120.08956 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.90998 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47529 * 89.99787 * 6 5 4 8 8 C 1.48525 * 110.99862 * 287.39524 * 7 6 5 9 9 C 1.55103 * 103.28607 * 200.33027 * 8 7 6 10 10 C 1.54590 * 102.84508 * 37.30463 * 9 8 7 11 11 O 1.42902 * 110.30641 * 97.11737 * 10 9 8 12 12 C 1.50695 * 110.30982 * 219.18631 * 10 9 8 13 13 H 1.08005 * 119.99630 * 121.40252 * 12 10 9 14 14 C 1.37876 * 120.00248 * 301.67617 * 12 10 9 15 15 N 1.31513 * 119.99699 * 353.95120 * 14 12 10 16 16 Si 1.86796 * 120.00378 * 173.95274 * 14 12 10 17 17 H 1.48501 * 109.47455 * 94.97284 * 16 14 12 18 18 H 1.48496 * 109.47238 * 214.98228 * 16 14 12 19 19 H 1.48502 * 109.46833 * 334.97760 * 16 14 12 20 20 C 1.47901 * 111.00157 * 170.00018 * 7 6 5 21 21 C 1.38226 * 120.17839 * 0.28958 * 5 4 3 22 22 C 1.38670 * 120.08739 * 359.45763 * 21 5 4 23 23 O 1.36004 * 120.04339 * 180.26839 * 22 21 5 24 24 C 1.42895 * 116.99832 * 0.25346 * 23 22 21 25 25 C 1.38970 * 120.04660 * 179.97438 * 3 2 1 26 26 O 1.36094 * 120.09087 * 0.04519 * 25 3 2 27 27 H 1.09001 * 109.46705 * 60.00458 * 1 2 3 28 28 H 1.09007 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47215 * 300.00110 * 1 2 3 30 30 H 1.08004 * 119.95681 * 359.97438 * 4 3 2 31 31 H 1.08997 * 109.47586 * 329.99561 * 6 5 4 32 32 H 1.09004 * 109.47273 * 209.99297 * 6 5 4 33 33 H 1.09002 * 110.67056 * 318.71592 * 8 7 6 34 34 H 1.09007 * 110.66963 * 81.67762 * 8 7 6 35 35 H 1.09001 * 110.70709 * 278.99354 * 9 8 7 36 36 H 1.09002 * 110.81368 * 155.66719 * 9 8 7 37 37 H 0.96699 * 113.99975 * 56.48734 * 11 10 9 38 38 H 0.97003 * 120.00240 * 180.02562 * 15 14 12 39 39 H 1.08993 * 109.92014 * 26.48799 * 20 7 6 40 40 H 1.09007 * 110.07523 * 265.28731 * 20 7 6 41 41 H 1.07998 * 119.95465 * 179.73034 * 21 5 4 42 42 H 1.09007 * 109.46953 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47732 * 299.99512 * 24 23 22 44 44 H 1.09000 * 109.47430 * 60.00063 * 24 23 22 45 45 H 0.96697 * 114.00323 * 89.99595 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2921 2.3753 -0.0005 5 6 1.9187 3.6074 0.0000 6 6 1.0949 4.8693 0.0000 7 7 0.8267 5.2790 1.3850 8 6 -0.1650 4.3769 2.0243 9 6 -0.7063 5.2227 3.2064 10 6 -0.7573 6.6493 2.6131 11 8 -2.0767 6.9479 2.1524 12 6 -0.3226 7.6600 3.6429 13 1 0.5199 8.3057 3.4437 14 6 -0.9969 7.7565 4.8417 15 7 -2.0897 7.0522 5.0399 16 14 -0.3583 8.8875 6.1842 17 1 -1.0484 10.1995 6.0960 18 1 -0.6220 8.2776 7.5122 19 1 1.1034 9.0846 6.0115 20 6 0.2300 6.6316 1.4315 21 6 3.2987 3.6851 -0.0050 22 6 4.0603 2.5263 0.0008 23 8 5.4182 2.6039 0.0015 24 6 5.9932 3.9120 0.0016 25 6 3.4342 1.2856 0.0005 26 8 4.1782 0.1460 0.0001 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2136 2.3188 -0.0014 31 1 0.1513 4.6873 -0.5143 32 1 1.6418 5.6602 -0.5133 33 1 -0.9676 4.1325 1.3285 34 1 0.3180 3.4692 2.3865 35 1 -0.0226 5.1818 4.0544 36 1 -1.7027 4.8897 3.4966 37 1 -2.7600 6.8578 2.8307 38 1 -2.5644 7.1204 5.8831 39 1 -0.3002 6.8357 0.5013 40 1 1.0084 7.3787 1.5867 41 1 3.7845 4.6497 -0.0089 42 1 7.0802 3.8311 0.0025 43 1 5.6695 4.4513 -0.8886 44 1 5.6686 4.4516 0.8913 45 1 4.3935 -0.1829 -0.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:19 Heat of formation + Delta-G solvation = -152.559578 kcal Electronic energy + Delta-G solvation = -28194.079153 eV Core-core repulsion = 24176.943329 eV Total energy + Delta-G solvation = -4017.135824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79400 -40.15744 -39.96737 -38.11923 -37.81619 -36.17194 -34.17336 -32.60194 -30.70266 -30.43568 -29.77458 -28.71185 -27.96766 -26.66403 -25.43291 -23.08044 -22.77940 -21.83774 -21.27178 -19.76395 -19.04878 -18.63158 -18.07507 -17.46943 -17.20801 -16.90516 -16.83182 -16.43657 -16.33053 -16.10816 -15.78384 -15.55752 -15.15414 -14.85722 -14.62534 -14.23834 -13.99055 -13.69987 -13.51294 -13.28160 -13.15070 -13.01233 -12.89107 -12.66012 -12.53466 -12.41373 -12.33419 -12.27047 -12.09523 -11.99396 -11.76871 -11.64310 -11.52190 -11.07922 -10.56167 -10.11098 -9.42063 -9.19106 -9.16170 -8.20920 -6.32638 0.12757 0.33036 1.39916 1.42853 1.52560 1.87140 2.39941 2.46854 2.69974 3.03220 3.16722 3.27054 3.63178 3.87697 3.92925 4.01795 4.16569 4.23303 4.31110 4.32884 4.36664 4.37125 4.41577 4.46445 4.53352 4.58856 4.64785 4.72539 4.74826 4.78577 4.80758 4.97629 5.09318 5.11653 5.21478 5.37213 5.40419 5.51816 5.59970 5.77443 5.95585 6.14812 6.21020 6.22551 6.26716 6.71466 6.89663 7.35205 7.45485 8.85566 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.003367 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.216717 B = 8313.531489 C = 9226.119062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.134 3.866 4 C -0.223 4.223 5 C -0.002 4.002 6 C 0.083 3.917 7 N -0.512 5.512 8 C 0.046 3.954 9 C -0.109 4.109 10 C 0.227 3.773 11 O -0.599 6.599 12 C -0.554 4.554 13 H 0.053 0.947 14 C 0.030 3.970 15 N -0.912 5.912 16 Si 0.955 3.045 17 H -0.277 1.277 18 H -0.281 1.281 19 H -0.271 1.271 20 C 0.064 3.936 21 C -0.210 4.210 22 C 0.133 3.867 23 O -0.321 6.321 24 C 0.017 3.983 25 C 0.017 3.983 26 O -0.488 6.488 27 H 0.068 0.932 28 H 0.124 0.876 29 H 0.056 0.944 30 H 0.142 0.858 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.375 0.625 38 H 0.267 0.733 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.121 -11.043 -13.253 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.087 3.913 4 C -0.242 4.242 5 C -0.003 4.003 6 C -0.044 4.044 7 N -0.236 5.236 8 C -0.081 4.081 9 C -0.148 4.148 10 C 0.187 3.813 11 O -0.408 6.408 12 C -0.592 4.592 13 H 0.071 0.929 14 C -0.170 4.170 15 N -0.552 5.552 16 Si 0.781 3.219 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.063 4.063 21 C -0.230 4.230 22 C 0.087 3.913 23 O -0.234 6.234 24 C -0.077 4.077 25 C -0.030 4.030 26 O -0.298 6.298 27 H 0.087 0.913 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.224 0.776 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.166 0.834 42 H 0.141 0.859 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 10.003 -11.271 -12.819 19.785 hybrid contribution -1.228 0.881 0.656 1.647 sum 8.775 -10.390 -12.163 18.246 Atomic orbital electron populations 1.23392 0.76327 1.05761 1.02224 1.86090 1.23303 1.25677 1.88283 1.19000 0.90747 0.85318 0.96222 1.21083 1.00692 0.90926 1.11527 1.19349 0.93151 0.93860 0.93949 1.21285 0.98490 0.94787 0.89870 1.64759 1.41148 1.01919 1.15767 1.23214 0.92981 0.95967 0.95949 1.22772 0.98995 0.96718 0.96338 1.19618 0.80159 0.91487 0.89990 1.86106 1.19116 1.92899 1.42672 1.21944 1.15222 1.20593 1.01451 0.92861 1.25643 0.94688 0.96670 1.00041 1.69772 1.17226 1.42036 1.26128 0.85598 0.78833 0.78928 0.78591 1.20288 1.20681 1.19600 1.22670 0.95859 0.90692 0.97125 1.21074 0.93780 0.97764 1.10368 1.19033 0.83490 0.92669 0.96119 1.86088 1.16154 1.32928 1.88249 1.23397 1.00242 0.81683 1.02382 1.16904 0.86596 0.84914 1.14543 1.84903 1.71638 1.38871 1.34380 0.91320 0.85769 0.92513 0.84059 0.92952 0.88482 0.93789 0.90728 0.93886 0.93049 0.77564 0.92329 0.94035 0.90618 0.83425 0.85866 0.91101 0.92435 0.74882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -7.96 10.28 -79.55 -0.82 -8.78 16 3 C 0.13 3.61 6.70 22.55 0.15 3.76 16 4 C -0.22 -5.79 7.81 22.37 0.17 -5.62 16 5 C 0.00 -0.06 5.16 -19.87 -0.10 -0.16 16 6 C 0.08 2.35 4.86 85.55 0.42 2.77 16 7 N -0.51 -18.58 5.24 -887.23 -4.65 -23.22 16 8 C 0.05 1.74 5.68 86.71 0.49 2.23 16 9 C -0.11 -5.06 5.29 31.86 0.17 -4.89 16 10 C 0.23 11.15 0.98 -10.66 -0.01 11.14 16 11 O -0.60 -30.79 12.94 -148.98 -1.93 -32.71 16 12 C -0.55 -29.92 8.12 25.60 0.21 -29.72 16 13 H 0.05 2.88 7.36 -2.91 -0.02 2.86 16 14 C 0.03 1.59 5.23 84.65 0.44 2.03 16 15 N -0.91 -48.92 10.98 21.45 0.24 -48.68 16 16 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 C 0.06 2.67 6.13 86.45 0.53 3.20 16 21 C -0.21 -5.43 8.68 22.37 0.19 -5.24 16 22 C 0.13 3.59 6.70 22.55 0.15 3.74 16 23 O -0.32 -7.88 10.28 -79.65 -0.82 -8.70 16 24 C 0.02 0.28 9.81 113.37 1.11 1.39 16 25 C 0.02 0.47 6.73 22.62 0.15 0.62 16 26 O -0.49 -12.91 13.07 -70.47 -0.92 -13.84 16 27 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 28 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 30 H 0.14 3.29 6.29 -2.91 -0.02 3.27 16 31 H 0.05 1.42 7.77 -2.39 -0.02 1.40 16 32 H 0.10 2.44 8.02 -2.38 -0.02 2.42 16 33 H 0.04 1.54 7.81 -2.39 -0.02 1.53 16 34 H 0.07 2.66 7.84 -2.38 -0.02 2.64 16 35 H 0.04 2.16 7.85 -2.39 -0.02 2.15 16 36 H 0.05 2.47 7.90 -2.39 -0.02 2.45 16 37 H 0.38 19.68 7.35 -74.06 -0.54 19.13 16 38 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 39 H 0.04 1.66 7.59 -2.39 -0.02 1.65 16 40 H 0.08 3.19 7.39 -2.38 -0.02 3.18 16 41 H 0.15 3.32 6.29 -2.91 -0.02 3.30 16 42 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.07 0.94 7.65 -2.39 -0.02 0.92 16 44 H 0.06 0.98 7.67 -2.39 -0.02 0.97 16 45 H 0.40 6.68 9.07 -74.06 -0.67 6.01 16 Total: -1.00 -65.54 365.11 -1.86 -67.40 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.18 Total: 37.26 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 5.19 Total: -13.32 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -4.41 Total: -71.90 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -4.48 Total: -64.03 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.54 -1.86 -67.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.161 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds